New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	758482 =	40 (1.440)	4 (0.140)	4/268	3.6	9.1%	noncoding (74/118 nt)	RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913_3_pae_tpiA	= 2549563	NA (NA)					noncoding (98/98 nt)	RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTG‑ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTGGT  >  NC_000913_3_pae_tpiA/2549415‑2549708                                                                                                                                                      |                                                                                                                                                  ccAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGCACCAAGGGTGTA‑TTCGCAATGCAATATTTTGGTCAGGCGTACGTGGAGCTTATAATATAGTTAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                                                                                                   <  2:368270/149‑1 (MQ=12)       agtAATGTTACTGGCTGGTCTGAGAGTGCTG‑ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTAc                                                                                                                                             >  1:60333/1‑149 (MQ=255)       agtAATGTTACTGGCTGGTCTGAGAGTGCTG‑ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAACGCGTTCACCCCCCATCCGGCGTGTAc                                                                                                                                             >  2:18396/1‑149 (MQ=255)        gtAATGTTACTGGCTGGTCTGAGAGTGCTG‑ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGCTAAGGCGTTCACGCCGCATCCGGCGTGTACa                                                                                                                                            >  2:72052/1‑149 (MQ=255)          aagtttACGGGTTGGTCTGAGAGGGCTG‑ACAACCGCAAAACTGCCTGATGCGCCACGCTTATCAGGCCTACGTGGATGCCACAAGATATTGAATTAGCACGATTTCGTATGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAAc                                                                                                                                          <  2:308196/145‑1 (MQ=18)                           tGAGAGTGCTG‑ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTcaacaa                                                                                                                         <  2:424012/149‑1 (MQ=255)                             agagTGCTG‑ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATc                                                                                                                       <  2:2787/149‑1 (MQ=255)                                 tGCTG‑AAAAAGGCAAAACTCCCCGAGGCGGTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAg                                                                                                                   <  1:376264/149‑1 (MQ=25)                                   gcagataaaCGCAAAACTGCCTGATTGTCTACGCTTATCAGGCCTACATGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAgg                                                                                                                  <  1:393920/143‑1 (MQ=18)                                           aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGccta                                                                                                                                                <  2:101241/111‑4 (MQ=18)                                           aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGccta                                                                                                                                                >  1:101241/1‑108 (MQ=18)                                              cAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTaa                                                                                                       >  1:99997/1‑149 (MQ=255)                                                 aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAAAGCGAACTTGGTCAACAATCTGAGGCCAGTCAGTAATgg                                                                                                    >  2:423125/1‑148 (MQ=255)                                                  aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCCCTTGGTCAACAATCTGAGGCCAGTCGGTAATGtt                                                                                                   >  1:5717/1‑149 (MQ=255)                                                         gATGGGCTACGCGTATCAGGTCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCt                                                                                            <  1:399752/149‑1 (MQ=255)                                                                      tATCAGGGCTACGTGGAGCCCACAATGTATTGAATTGGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCaa                                                                               <  1:18396/149‑1 (MQ=255)                                                                        tCAGGCCTACGTGGAGCCCAAAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATg                                                                             >  2:4800/1‑149 (MQ=255)                                                                              cTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGAAATTATTCAACAATCTGAGACCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAAGCAg                                                                       >  1:379048/1‑149 (MQ=37)                                                                                    ggAGTCTACAATATATCGAAGTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGc                                                                 <  2:106026/149‑1 (MQ=255)                                                                                    ggAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGc                                                                 <  2:363526/149‑1 (MQ=255)                                                                                    ggAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCATCCACGCCTCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAATAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGc                                                                 <  1:483669/149‑1 (MQ=255)                                                                                        cccACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCCTCCGGCGTGTACAACCCGCGCTTGGTCAACAATCTGATGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTAc                                                             >  1:103321/1‑149 (MQ=255)                                                                                         ccACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGAACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACa                                                            >  1:449193/1‑149 (MQ=255)                                                                                           acaATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGCTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc                                                          >  1:313367/1‑149 (MQ=255)                                                                                                atatTGAATGAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCAt                                                     <  2:314073/149‑1 (MQ=255)                                                                                                       aTTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTg                                              <  1:271142/149‑1 (MQ=255)                                                                                                         tAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTc                                            <  1:473786/149‑1 (MQ=255)                                                                                                          aGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGACAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTcg                                           >  1:251193/1‑148 (MQ=255)                                                                                                            cACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAg                                         >  1:241701/1‑149 (MQ=255)                                                                                                            cACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAg                                         >  1:241832/1‑149 (MQ=255)                                                                                                                aTTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCGTCATCTTGTCCAGCGAc                                     >  1:500662/1‑149 (MQ=255)                                                                                                                  ttCTTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACgg                                   <  2:99019/149‑1 (MQ=255)                                                                                                                            ggATAAGGCGTTCACGCCGCATGGGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCCGCGACGGTGCGAaataa                         >  2:447991/1‑149 (MQ=255)                                                                                                                                   gCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAgccgc                  >  1:116484/1‑149 (MQ=255)                                                                                                                                    cGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGCCGGTGCGACATACAAgccgcc                 >  2:412884/1‑149 (MQ=255)                                                                                                                                     atccACGCCGCACCCGGCGTATACACCGCACACATACTCAACAATCTGAGGGCAGGCAGTAATGTTACTGCCTGGCCTTTAAGCAATGAATCAGAAACGCTGACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGccgccg                <  1:36010/146‑1 (MQ=255)                                                                                                                                      ttCACGCCGCATCCGGCGTGTACAACGCACACTTGGTCAACAATCTGAGGCCAGTCACTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCgg               <  1:487795/149‑1 (MQ=255)                                                                                                                                         aCGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAGTAATAGCCGCCGGTTa            >  1:362434/1‑149 (MQ=255)                                                                                                                                           gccgcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTAcc          >  2:470881/1‑149 (MQ=255)                                                                                                                                               cATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGtt      <  2:60333/149‑1 (MQ=255)                                                                                                                                                   cGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCTTCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTGGt  <  2:484747/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  CCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTG‑ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTGGT  >  NC_000913_3_pae_tpiA/2549415‑2549708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.