New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1932093	NA (NA)	5 (0.190)	5/256	3.0	NA	noncoding (8/19 nt)	REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_pae_tpiA	= 1932096	NA (NA)					noncoding (11/19 nt)	REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGCACGCTTTTCAGCGC  >  NC_000913_3_pae_tpiA/1931947‑1932237                                                                                                                                                   |                                                                                                                                                 cGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGCTCCt                                                                                                                                                >  2:388212/1‑149 (MQ=255)        tgcaggCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCgg                                                                                                                                         <  1:148696/145‑1 (MQ=255)             gCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCTGGCAtt                                                                                                                                    >  1:218568/1‑149 (MQ=255)                  cggcgtaTGGGGGTGGCTGTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAGATGCCCGATCCTCGATCGGGCATTTTGAc                                                                                                                               <  2:234059/146‑1 (MQ=255)                       tcTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGCTCCTCGATCGGGCATTTTGACTTTTa                                                                                                                          >  1:21254/1‑149 (MQ=255)                         tGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTCAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACa                                                                                                                        <  1:490598/149‑1 (MQ=255)                                      ggCTACTGCAGAGAGTGTTGTTGCCGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTc                                                                                                           <  1:186637/149‑1 (MQ=255)                                                gagagTGTTGTTGACGCCATTGAACGCGCGAAACACGCCGCCGGACAGGTAGAAGTACAGGATTAAACCGGGCAAAAAAACGCTCCAAAAAAGCCCGATCCTCGAGCGGGCATATTCCCTTTTACAGCTTAACGCCTTCTACAGCTTCa                                                                                                 >  2:18769/1‑149 (MQ=255)                                                 agagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGAAGTTTACAGCTTAGCGCCTTCTACACCTTCAc                                                                                                >  2:26590/1‑149 (MQ=255)                                                         gatgACGCCATTAAACGCGCGGAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGc                                                                                        <  2:218568/147‑1 (MQ=255)                                                          ttgACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCt                                                                                       >  1:37230/1‑149 (MQ=255)                                                                ccATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTAAAGGGTTAAACCCGGCCAACAACCGCTACAGAAGGGCGCAAGCCACTAGCGTGCATTTTGACTTTGACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTaa                                                                                 <  1:103220/149‑1 (MQ=255)                                                                 cATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAAt                                                                                >  1:55791/1‑149 (MQ=255)                                                                               aGCACGCCGCCGGACGGGTAAAAGCACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGc                                                                  <  1:274224/149‑1 (MQ=255)                                                                                  aCGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCg                                                               >  2:496737/1‑149 (MQ=255)                                                                                               ggTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTa                                                                                     >  2:200251/1‑114 (MQ=255)                                                                                               ggTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTa                                                                                     <  1:200251/114‑1 (MQ=255)                                                                                               ggTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATc                                                  >  1:391345/1‑149 (MQ=255)                                                                                               ggTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATc                                                  >  1:1851/1‑149 (MQ=255)                                                                                                        aCAGGGTTAAACCCGGCAAAAAAACGCTACCAATTTACCCGGTCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCCTCCAGCGCATCTGCCGGAAc                                         >  1:510173/1‑149 (MQ=255)                                                                                                          aGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAAcca                                       <  1:350114/149‑1 (MQ=255)                                                                                                              taaaaCCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATGTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAAccagcca                                   <  2:82078/147‑1 (MQ=255)                                                                                                               tAAACCCGGCAAAAACACTCTACAAAAATGCCCGATCCTCGATCGGGCACTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCTGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAAccagccag                                  <  1:245603/149‑1 (MQ=255)                                                                                                                    ccGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGccc                                                                >  2:188929/1‑114 (MQ=255)                                                                                                                    ccGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGccc                                                                <  1:188929/114‑1 (MQ=255)                                                                                                                      ggCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAaccac                           >  2:123732/1‑149 (MQ=255)                                                                                                                                 gCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGc                <  1:496737/149‑1 (MQ=255)                                                                                                                                             cccGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGAACAGCACGCTTTTCAgc    >  1:3365/1‑149 (MQ=255)                                                                                                                                              ccGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTCCAGCTTCACGCGCCAGCTTAATAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTACCGGAACCAGCCCGGAACCACCTATGCACAGCACACTTCTCAgcg   >  1:90337/1‑149 (MQ=255)                                                                                                                                               cGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCTGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGCACGCTTTTCAgcgc  <  2:391345/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGCACGCTTTTCAGCGC  >  NC_000913_3_pae_tpiA/1931947‑1932237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.