New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1932093	NA (NA)	5 (0.190)	5/256	3.0	NA	noncoding (8/19 nt)	REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_pae_tpiA	= 1932096	NA (NA)					noncoding (11/19 nt)	REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGCACGCTTTTCAGCGCCAG  >  NC_000913_3_pae_tpiA/1931954‑1932240                                                                                                                                               |                                                                                                                                                 tgcaggCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCgg                                                                                                                                            <  1:148696/145‑1 (MQ=255)      gCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCTGGCAtt                                                                                                                                       >  1:218568/1‑149 (MQ=255)           cggcgtaTGGGGGTGGCTGTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAGATGCCCGATCCTCGATCGGGCATTTTGAc                                                                                                                                  <  2:234059/146‑1 (MQ=255)                tcTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGCTCCTCGATCGGGCATTTTGACTTTTa                                                                                                                             >  1:21254/1‑149 (MQ=255)                  tGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTCAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACa                                                                                                                           <  1:490598/149‑1 (MQ=255)                               ggCTACTGCAGAGAGTGTTGTTGCCGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTc                                                                                                              <  1:186637/149‑1 (MQ=255)                                         gagagTGTTGTTGACGCCATTGAACGCGCGAAACACGCCGCCGGACAGGTAGAAGTACAGGATTAAACCGGGCAAAAAAACGCTCCAAAAAAGCCCGATCCTCGAGCGGGCATATTCCCTTTTACAGCTTAACGCCTTCTACAGCTTCa                                                                                                    >  2:18769/1‑149 (MQ=255)                                          agagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGAAGTTTACAGCTTAGCGCCTTCTACACCTTCAc                                                                                                   >  2:26590/1‑149 (MQ=255)                                                  gatgACGCCATTAAACGCGCGGAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGc                                                                                           <  2:218568/147‑1 (MQ=255)                                                   ttgACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCt                                                                                          >  1:37230/1‑149 (MQ=255)                                                         ccATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTAAAGGGTTAAACCCGGCCAACAACCGCTACAGAAGGGCGCAAGCCACTAGCGTGCATTTTGACTTTGACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTaa                                                                                    <  1:103220/149‑1 (MQ=255)                                                          cATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAAt                                                                                   >  1:55791/1‑149 (MQ=255)                                                                        aGCACGCCGCCGGACGGGTAAAAGCACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGc                                                                     <  1:274224/149‑1 (MQ=255)                                                                           aCGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCg                                                                  >  2:496737/1‑149 (MQ=255)                                                                                        ggTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTa                                                                                        <  1:200251/114‑1 (MQ=255)                                                                                        ggTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTa                                                                                        >  2:200251/1‑114 (MQ=255)                                                                                        ggTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATc                                                     >  1:391345/1‑149 (MQ=255)                                                                                        ggTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATc                                                     >  1:1851/1‑149 (MQ=255)                                                                                                 aCAGGGTTAAACCCGGCAAAAAAACGCTACCAATTTACCCGGTCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCCTCCAGCGCATCTGCCGGAAc                                            >  1:510173/1‑149 (MQ=255)                                                                                                   aGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAAcca                                          <  1:350114/149‑1 (MQ=255)                                                                                                       taaaaCCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATGTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAAccagcca                                      <  2:82078/147‑1 (MQ=255)                                                                                                        tAAACCCGGCAAAAACACTCTACAAAAATGCCCGATCCTCGATCGGGCACTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCTGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAAccagccag                                     <  1:245603/149‑1 (MQ=255)                                                                                                             ccGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGccc                                                                   >  2:188929/1‑114 (MQ=255)                                                                                                             ccGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGccc                                                                   <  1:188929/114‑1 (MQ=255)                                                                                                               ggCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAaccac                              >  2:123732/1‑149 (MQ=255)                                                                                                                          gCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGc                   <  1:496737/149‑1 (MQ=255)                                                                                                                                      cccGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGAACAGCACGCTTTTCAgc       >  1:3365/1‑149 (MQ=255)                                                                                                                                       ccGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTCCAGCTTCACGCGCCAGCTTAATAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTACCGGAACCAGCCCGGAACCACCTATGCACAGCACACTTCTCAgcg      >  1:90337/1‑149 (MQ=255)                                                                                                                                        cGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCTGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGCACGCTTTTCAgcgc     <  2:391345/149‑1 (MQ=255)                                                                                                                                           tattCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGCACGCTTTTCAGCGCCAg  <  2:336958/146‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 TGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCGTAATCGCCCGCTTCCAGCGCATCTGCCGGAACCAGCCAGGAACCACCGATGCACAGCACGCTTTTCAGCGCCAG  >  NC_000913_3_pae_tpiA/1931954‑1932240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.