New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3312708	67 (1.110)	5 (0.090)	5/266	7.6	8.0%	coding (70/945 nt)	truB	tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase
	?	NC_000913_3_pae_tpiA	= 3312724	52 (0.920)					coding (54/945 nt)	truB	tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGGGAAAACTTCGTCGCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTGGTCACCAGGTTTGACATGCGC  >  NC_000913_3_pae_tpiA/3312577‑3312858                                                                                                                                                    |                                                                                                                                       cTGGGCAAACTTCGTCGCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTAt                                                                                                                                       >  2:916166/1‑149 (MQ=255)  tGGGAAAACTTCGTCGCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATc                                                                                                                                      >  2:153552/1‑149 (MQ=255)  ggggAAAGCTTTGTCGCTTCCCCGAGGCAAAGCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATc                                                                                                                                      <  2:440247/148‑1 (MQ=255)    ggAAAGCTTCGCCGCTTCCCCGAGGCGAATCGGCAACATGCCGGGCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCa                                                                                                                                    <  2:782368/149‑1 (MQ=255)    ggAAAACTTCGTCGCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCCCTTTTTGCAGCGCATCGTTGCTGGACATACCCTGCGGTTTTTCCa                                                                                                                                    >  2:958087/1‑149 (MQ=255)    ggAAAACTTCGTCGCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCa                                                                                                                                    <  2:1044768/149‑1 (MQ=255)     gAAAACTTCGTCGCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAg                                                                                                                                   <  2:936755/149‑1 (MQ=255)           ttCGTCGCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGcaacaa                                                                                                                             >  1:424330/1‑149 (MQ=255)              gtcgCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAAc                                                                                                                          >  2:534271/1‑149 (MQ=255)                  cTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCg                                                                                                                      >  2:139853/1‑149 (MQ=255)                       ccGGGGCAAATCGGCAACCTGCCGGTCGCCAGCGGGTCCAGGGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGGCATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAAt                                                                                                                 <  2:257434/149‑1 (MQ=255)                       ccGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATAGCCTGAGGTTTATCCAGCAACAAAACGCCGTTAAt                                                                                                                 >  1:21477/1‑149 (MQ=255)                          aGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACAGGTATAAACGTCACGGTTATCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATTTc                                                                                                              >  2:963477/1‑149 (MQ=255)                            gCAAATCGGCAACCTGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTcgc                                                                                                            <  2:390459/149‑1 (MQ=255)                               aaccGGCAACATGCCGGTCGCCAGCCGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGCcgcgac                                                                                                         <  2:941141/146‑1 (MQ=255)                               aaTCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCCCGGTTGGCGATATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACCTACCCTGAGGTTTATCCACCAACAAAACGCCGTTAATGTcgcgac                                                                                                         >  1:228500/1‑149 (MQ=255)                               aaTCGGCAACATCGCGGTCGCCAGGTGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTcgcgac                                                                                                         <  1:71025/149‑1 (MQ=255)                                aTCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTcgcgacc                                                                                                        >  1:369567/1‑149 (MQ=255)                                  cGGCAACATGCCGGTTGCGAGCGGGTTCAGCTCATCGGCATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTcgcgaccgc                                                                                                      <  1:279977/149‑1 (MQ=255)                                          tGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGcgacgacga                                                                                              <  1:139853/149‑1 (MQ=255)                                           gCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAg                                                                                             <  1:170561/149‑1 (MQ=255)                                            ccGGTCGGAAGCGGGTCCAGCGCACCGGTCTGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAgg                                                                                            <  2:872581/149‑1 (MQ=255)                                                  gCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACt                                                                                      <  2:424330/149‑1 (MQ=255)                                                   ccAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGTGGTTTAGCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGTCGGCtt                                                                                     <  2:130212/149‑2 (MQ=255)                                                    cAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCa                                                                                                                                    <  1:923527/101‑1 (MQ=255)                                                    cAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCa                                                                                                                                    >  2:923527/1‑101 (MQ=255)                                                    cAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCTACGACGAGGACGACTCa                                                                                    >  1:685169/1‑149 (MQ=255)                                                     aGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATCCCCCGATGTTTAGCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCAt                                                                                   <  1:729862/149‑1 (MQ=255)                                                       cGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATCCCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTa                                                                                 <  1:71227/149‑1 (MQ=255)                                                       cGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTa                                                                                 <  1:746252/149‑1 (MQ=255)                                                       cGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTa                                                                                 <  2:650315/149‑1 (MQ=255)                                                       cGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTa                                                                                 <  1:909428/149‑1 (MQ=255)                                                        gggTCCAGCGCACTGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACTCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAg                                                                                <  2:43302/149‑1 (MQ=255)                                                          gTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCTCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGCGGACGAGGAAGACTCATTAGtc                                                                              >  2:101055/1‑149 (MQ=255)                                                            cgaGCGAACCGGTGTGCCCGGCACGGTGGTCGTTATATATACGTTTCACTTTTTCCAGCGCATCGTTGCTGGACACACCCTGAGGTTTATCCAGCAACAAAACGTCGTTAATGTCGCGCCCGCGACGACGAGGACGACTCATTAGtcct                                                                            <  2:290495/147‑1 (MQ=255)                                                               gcgcACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTcctcct                                                                         >  2:531700/1‑149 (MQ=255)                                                               gcgcACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTGATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTcctcct                                                                         <  1:916166/149‑1 (MQ=255)                                                                 gcACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTg                                                                       <  1:531700/149‑1 (MQ=255)                                                                  cACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGATCGCCATACCCTGAGGTTGAACCAGCAACAAAACGCCGTTACTGTCGCGACCGCGACGACGAGGACGCCTCATTATTCCTGCTTGc                                                                      >  1:510241/1‑149 (MQ=255)                                                                   cccGGTAGGTCCGGCACGGTTGGCGTTATATATCCGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCt                                                                     <  1:83811/148‑1 (MQ=255)                                                                    ccGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTg                                                                    <  2:191953/149‑1 (MQ=255)                                                                                  aCGGTTGGCGTTATATATACGGTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAac                                                      <  2:1052563/149‑1 (MQ=255)                                                                                    ggTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAacac                                                    >  1:703761/1‑149 (MQ=255)                                                                                              atatataCGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGcgacgacga                                                                                              <  2:957554/97‑1 (MQ=255)                                                                                              atatataCGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGcgacgacga                                                                                              >  1:957554/1‑97 (MQ=255)                                                                                                   tccGTTTCACTTTTGGCAGCGCATCGTTGATGGACATCCCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCAt                                     <  2:986415/147‑1 (MQ=255)                                                                                                   taCGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCAt                                     >  2:384651/1‑149 (MQ=255)                                                                                                         taaCTTTTTGCATCGCATCGTTGCTGGACATCCCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATTTCGCGACCGTGACGACGAGGACGACTGATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGCTTGa                               <  2:448420/147‑1 (MQ=255)                                                                                                                 tGCAGGTCATCGTTGCTGGACGTACCCTGAGGTTTAGCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTg                       <  1:958087/149‑1 (MQ=255)                                                                                                                 tGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTg                       <  2:144254/149‑1 (MQ=255)                                                                                                                 tGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTg                       <  1:307541/149‑1 (MQ=255)                                                                                                                   cagcgcagcgTTGCTGGACATACCCTGAGGTTTACCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTGGt                     <  2:297271/149‑1 (MQ=255)                                                                                                                     gcgcATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTGGTCa                   >  2:908910/1‑149 (MQ=255)                                                                                                                        cATCGGTGCTGGAAATGCGCTGATGTTGGTCCAGCAAGAAAACGCCGTTTATGTCGCGGGCGGGACGGCGTGGACGGCTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAGCACGTCGTTTTTCGTCATGTTTGACCACGCTGGTCACCa                <  2:407355/149‑1 (MQ=255)                                                                                                                         aTCGTTGCTGGAAATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTGGTCACCAg               <  1:153552/149‑1 (MQ=255)                                                                                                                           cGTTGCTGGACATTCGGTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTGGTCACCAGGt             <  2:1025065/149‑1 (MQ=255)                                                                                                                                 tGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACACATTAGTCCTCCTTGCTGTCGTCCGGGTTCACACCACGTTCTTCGTCATGTTTCACCCCGCTGCTCACCAGGTTTggcc       >  2:869010/1‑146 (MQ=255)                                                                                                                                   gACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTGGTCACCAGGTTTGACATg     <  1:114712/149‑1 (MQ=255)                                                                                                                                      aTACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACTACGTTCTTCGTCATGTTTGACCACGCTGGTCGCCAGGTTTGACATgcgc  >  1:196228/1‑149 (MQ=255)                                                                                                                                                gTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAg                                                                                <  2:146693/61‑1 (MQ=255)                                                                                                                                                gTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAg                                                                                >  1:146693/1‑61 (MQ=255)                                                                                                                                                    |                                                                                                                                       CTGGGAAAACTTCGTCGCTTCCCCGAGGCAAATCGGCAACATGCCGGTCGCCAGCGGGTCCAGCGCACCGGTATGCCCGGCACGGTTGGCGTTATATATACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGACGAGGACGACTCATTAGTCCTCCTTGCTGTCGTCCGGGTTAACACGACGTTCTTCGTCATGTTTGACCACGCTGGTCACCAGGTTTGACATGCGC  >  NC_000913_3_pae_tpiA/3312577‑3312858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.