New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1758437 =	16 (0.570)	5 (0.180)	5/272	3.0	23.6%	coding (289/1005 nt)	ldtE	murein L,D‑transpeptidase
	?	NC_000913_3_pae_tpiA	1758456 =	17 (0.620)					coding (270/1005 nt)	ldtE	murein L,D‑transpeptidase
Rejected: Coverage evenness skew score above cutoff.

CACGCGTTTCCATCACCGGCGTTTCCAGCCCCTGCAATCCAATACCTATTGGATAAACCTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCAC  >  NC_000913_3_pae_tpiA/1758314‑1758596                                                                                                                                               |                                                                                                                                             cacGCGTTTCCATCACCGGCGTTTCCAGCCCCTGCAATCCAATACCTATTGGATAAACCTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAAGAAc                                                                                                                                        >  1:358719/1‑149 (MQ=255)     cgTTTCCATCACCGGCGTTTCCAGCCCCTGCAATCCAATAACTATTGGATAAACCTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGtt                                                                                                                                    <  2:310072/149‑1 (MQ=255)      gTTTCCATCACCGGCGTTTCCAGCCCCTGCAATCCAATACCTATTGGATAAACCTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTtg                                                                                                                                   <  2:277382/149‑1 (MQ=255)          ccaccaCCGGCGTTTCCAGCCCCTGCAATCCAATACCTTTTGGATAAACCTGCACAATATTTTCGCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAACTAATCGGTTATCTCCTGACGCGGTGCATCAGGTAATAACAGTTGTGaa                                                                                                                               <  2:457916/149‑1 (MQ=255)                             ccccTGCAATCCAATACCTATTGGATAAACCTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCCGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTAc                                                                                                            >  2:259451/1‑149 (MQ=255)                                     actcAAGACCTATTGGATAAACCTGCACAATATTTTCCGCCGGCGGATAATAATAAAGGCGCAGCGCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATACCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGtttt                                                                                                    <  2:293714/146‑1 (MQ=255)                                             ccTATTGGATAAACCTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCgg                                                                                            <  1:236684/149‑1 (MQ=255)                                               tATTGGATAAACCTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGCTTTGGCACCgggg                                                                                          >  2:240459/1‑149 (MQ=255)                                                      tAAACCTGCACAATATTTGCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAgt                                                                                   <  1:80712/149‑1 (MQ=255)                                                          ccTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGttt                                                                               >  2:204346/1‑148 (MQ=255)                                                                         ctcCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATc                                                                <  1:156592/149‑1 (MQ=255)                                                                                             aGGCGCAGCGCTGCAAGGTTAACGATACTCCCCTGACGCGGTGCATCAGGTAATCACAGTTGTGAAGGAATAGTTATCGGCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCaaa                                            <  1:430051/149‑1 (MQ=255)                                                                                                                 aaCGATAATCCCCTGACGCGGTGCATCAGGTAATAATAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGaa                        <  1:226649/149‑1 (MQ=255)                                                                                                                    gATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCTGGCAATAGCCTGAAGGt                     >  2:120393/1‑149 (MQ=255)                                                                                                                            ccTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGCTTTTTATcc             >  2:310826/1‑149 (MQ=255)                                                                                                                                  gcgGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCcttct       >  1:145868/1‑149 (MQ=255)                                                                                                                                       gCATCAGGTAATAGCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCAc  <  1:392098/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             CACGCGTTTCCATCACCGGCGTTTCCAGCCCCTGCAATCCAATACCTATTGGATAAACCTGCACAATATTTTCTCCCGGCGGATAATAATAAAGGCGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCAC  >  NC_000913_3_pae_tpiA/1758314‑1758596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.