New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2406375	76 (0.920)	6 (0.080)	6/262	6.3	7.8%	coding (267/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
	?	NC_000913_3_pae_tpiA	= 2406380	72 (0.950)					coding (262/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGCATTACGTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGC  >  NC_000913_3_pae_tpiA/2406227‑2406521                                                                                                                                                     |                                                                                                                                                   aGGCATTACGTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATATGATGCTCCTTTAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAg                                                                                                                                                    <  1:703908/149‑1 (MQ=255)   gCATTACGTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCa                                                                                                                                                  <  2:489163/149‑1 (MQ=255)      ttACGTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGc                                                                                                                                               >  2:892653/1‑149 (MQ=255)          gTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCtca                                                                                                                                           >  1:202258/1‑149 (MQ=255)          gTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCtca                                                                                                                                           >  1:243277/1‑149 (MQ=255)           tttAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCtcat                                                                                                                                          >  1:800156/1‑149 (MQ=255)           tttAACGCGGACATCCAGCGCGAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGCTTACTGACCATTAAAGATGAGCACGccgcca                                                                                                                                          >  2:1271080/1‑145 (MQ=255)               aCGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCAtt                                                                                                                                      >  2:1335564/1‑149 (MQ=255)               aCGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCAtt                                                                                                                                      <  1:260299/149‑1 (MQ=255)                   ggACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTaaaa                                                                                                                                  >  1:151393/1‑149 (MQ=255)                       aTCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCa                                                                                                                              <  1:443621/149‑1 (MQ=255)                          cAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGa                                                                                                                           >  2:1044986/1‑149 (MQ=255)                          cAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGAAGGCCTCATCATTAAAAAGCACGa                                                                                                                           >  2:379379/1‑149 (MQ=255)                              gcTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGAtttt                                                                                                                       >  1:867559/1‑149 (MQ=255)                               cTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTc                                                                                                                      <  1:1034120/149‑1 (MQ=255)                                tAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTcc                                                                                                                     >  2:1051577/1‑149 (MQ=255)                                    ttCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTACTGGTGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGc                                                                                                                 >  1:635044/1‑149 (MQ=255)                                    ttCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGc                                                                                                                 <  2:867559/149‑1 (MQ=255)                                         aTAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAAc                                                                                                            >  1:444754/1‑149 (MQ=255)                                             aCCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGACGCACCGAGAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGCTTTTCCTGGCGTAACCaag                                                                                                        >  2:1432845/1‑149 (MQ=255)                                             aCCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCaag                                                                                                        >  1:903512/1‑149 (MQ=255)                                              ccGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCaaga                                                                                                       >  1:1336651/1‑149 (MQ=255)                                                  aCTCACGCGATTTAACAGGAAAGGTAAGATCGGATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGtt                                                                                                   <  1:379379/149‑1 (MQ=255)                                                    tCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGCTTTTCCTGGCGTAACCAAGAAGTTGa                                                                                                 >  1:488239/1‑149 (MQ=255)                                                    tCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCAACGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGa                                                                                                 >  1:944582/1‑149 (MQ=255)                                                      aCGCGATTTAACAGTAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAAt                                                                                               <  2:1422374/149‑1 (MQ=255)                                                      aCGCGATTTAACAGGAAAGGTAAGATCGTACCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAAt                                                                                               <  1:247769/149‑1 (MQ=255)                                                         cgATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGcc                                                                                            <  1:892653/149‑1 (MQ=255)                                                          gATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAAGATTAATGATGAGAAGGCCTCATCATTAAAACGCAGGATTTTTCTGGCGTAACAAAGAAGTTGAATGcac                                                                                           >  2:51767/1‑147 (MQ=255)                                                          gATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTACCAAAGAAGTTGAATGCCa                                                                                           >  2:1160403/1‑149 (MQ=255)                                                                 cAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGCAAAATAGTTCGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTGAg                                                                                    >  2:370307/1‑149 (MQ=255)                                                                  aGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGACGTTGAATGCCATGTTCAGt                                                                                   >  2:454265/1‑149 (MQ=255)                                                                  aGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGt                                                                                   <  2:800156/149‑1 (MQ=255)                                                                      aaagTAAGATCGTATCGGCATATTCATCTGAAGCACCGATAGTTAATACGCCCTAAAAATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAAc                                                                               <  1:51767/146‑1 (MQ=255)                                                                        ggTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGACCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAg                                                                             >  2:1250991/1‑149 (MQ=255)                                                                          tAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTGGAATGCCATGTTCAGTTAACAGtt                                                                           >  1:714819/1‑149 (MQ=255)                                                                              aTCGTATCGCCAGATTCATCTGAAGCACCGATAGTTAATACCCCCTGAAGATTACTGATCATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCGTCGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTttgtt                                                                       <  1:418209/149‑1 (MQ=255)                                                                                      ggCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGGTGCTACCGt                                                               <  2:1103228/149‑1 (MQ=255)                                                                                       gCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTg                                                              >  1:870121/1‑149 (MQ=255)                                                                                       gCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTg                                                              >  2:7544/1‑149 (MQ=255)                                                                                       gCAGATTCATCTGAAGCACCGATAGTTAATACGCCCGGAAGGTTACGCAACGTTAATAATGAGCGGGCGTGCTGATTAAAACGCAGGATTTTCCTGGCGTAGCCAAGCAGTTGAATGCCATGGTGAGTTAACAGCTTGTTGCGACCgga                                                              >  2:1169969/1‑147 (MQ=255)                                                                                         aGATTTATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTGATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGAc                                                            <  2:338782/149‑1 (MQ=255)                                                                                         aGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGAc                                                            <  1:1044986/149‑1 (MQ=255)                                                                                           aTTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGAcaa                                                          >  2:874850/1‑147 (MQ=255)                                                                                             tCATCTGAAGTACCGATAGTTAATACGCCCTGAAGATTACGGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGc                                                        <  1:718082/149‑1 (MQ=255)                                                                                               aTCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTCCAGTTAACAGTTTGTTGCAACCGGCACGAGcac                                                      >  2:1431728/1‑147 (MQ=255)                                                                                                tCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGACCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTCACAGTTTGTTGCAACCGTGACGAGCGaa                                                     >  2:162985/1‑149 (MQ=255)                                                                                                 cTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAAc                                                    >  1:734809/1‑149 (MQ=255)                                                                                                   gAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGCTGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGCCAGTAACGGGCGTACAg                                                  >  2:36437/1‑149 (MQ=255)                                                                                                      gCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTc                                               >  1:841668/1‑149 (MQ=255)                                                                                                            aTAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTc                                           <  2:83623/147‑1 (MQ=255)                                                                                                            aTAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTc                                           >  1:83623/1‑147 (MQ=255)                                                                                                                  aaTACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAg                                   >  1:791464/1‑149 (MQ=255)                                                                                                                   aTACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgt                                  >  2:1078608/1‑149 (MQ=255)                                                                                                                     aCGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgttg                                <  1:973068/149‑1 (MQ=255)                                                                                                                     aCGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgttg                                <  1:973086/149‑1 (MQ=255)                                                                                                                         ccTTAAGAATACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTcc                            <  2:586102/149‑1 (MQ=255)                                                                                                                         ccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCaagaa                                                                                                      <  2:158336/75‑1 (MQ=255)                                                                                                                         ccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCaagaa                                                                                                      >  1:158336/1‑75 (MQ=255)                                                                                                                         ccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTcc                            <  2:1045719/149‑1 (MQ=255)                                                                                                                          cTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCa                           <  2:596570/149‑1 (MQ=255)                                                                                                                          cTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCa                           >  1:586373/1‑149 (MQ=255)                                                                                                                           tGAAGATTACTGAACAGTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAg                          >  1:1258897/1‑149 (MQ=255)                                                                                                                             aatactACTGAACATTAATGATGAGCAGGCCTCATAATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGAc                        <  1:306148/144‑1 (MQ=255)                                                                                                                             aataTTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCCGGAATTTACTCGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGAc                        <  2:879783/146‑1 (MQ=255)                                                                                                                                  tACTGAACATTAAGGAGGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCTTAACTCAGAAGTTGAATGCCATGGTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGc                   <  2:881767/149‑1 (MQ=255)                                                                                                                                     tgacaaTTAATGATGAGCAGGCATCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGACTTGTTACAGACGCTGCAtt                >  2:679663/6‑149 (MQ=255)                                                                                                                                     tGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTTCCAACGAATTGTTACAGACGCTGCCtt                >  1:158091/1‑149 (MQ=255)                                                                                                                                     tGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCAtt                <  1:786409/149‑1 (MQ=255)                                                                                                                                       aaCATTAATGATGAGCAGGCCTCATCCTTCAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTg              >  1:711451/1‑149 (MQ=255)                                                                                                                                         cATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCt            >  1:582781/1‑149 (MQ=255)                                                                                                                                         cATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTCTCGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCt            <  1:1135182/149‑1 (MQ=255)                                                                                                                                          aTTAATGATGAGCAGGTCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAAAGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACCAACGAACAATTCTTTCCCAACGAGTTTTTCCAGACGCTGCATTTGCtc           >  2:455538/1‑148 (MQ=255)                                                                                                                                          aTTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAAc                                      <  2:1134853/122‑1 (MQ=255)                                                                                                                                          aTTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAAc                                      >  1:1134853/1‑122 (MQ=255)                                                                                                                                           ttAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGa          <  2:841668/149‑1 (MQ=255)                                                                                                                                                   gaGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGAAGCTGCATTTGCTGACTTAcggc  >  1:1316807/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AGGCATTACGTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGC  >  NC_000913_3_pae_tpiA/2406227‑2406521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.