New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2406375	76 (0.920)	6 (0.080)	6/262	6.3	7.8%	coding (267/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
	?	NC_000913_3_pae_tpiA	= 2406380	72 (0.950)					coding (262/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTACGTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGA  >  NC_000913_3_pae_tpiA/2406232‑2406528                                                                                                                                                     |                                                                                                                                                     ttACGTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGc                                                                                                                                                      >  2:892653/1‑149 (MQ=255)     gTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCtca                                                                                                                                                  >  1:202258/1‑149 (MQ=255)     gTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCtca                                                                                                                                                  >  1:243277/1‑149 (MQ=255)      tttAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCtcat                                                                                                                                                 >  1:800156/1‑149 (MQ=255)      tttAACGCGGACATCCAGCGCGAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGCTTACTGACCATTAAAGATGAGCACGccgcca                                                                                                                                                 >  2:1271080/1‑145 (MQ=255)          aCGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCAtt                                                                                                                                             >  2:1335564/1‑149 (MQ=255)          aCGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCAtt                                                                                                                                             <  1:260299/149‑1 (MQ=255)              ggACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTaaaa                                                                                                                                         >  1:151393/1‑149 (MQ=255)                  aTCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCa                                                                                                                                     <  1:443621/149‑1 (MQ=255)                     cAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGa                                                                                                                                  >  2:1044986/1‑149 (MQ=255)                     cAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGAAGGCCTCATCATTAAAAAGCACGa                                                                                                                                  >  2:379379/1‑149 (MQ=255)                         gcTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGAtttt                                                                                                                              >  1:867559/1‑149 (MQ=255)                          cTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTc                                                                                                                             <  1:1034120/149‑1 (MQ=255)                           tAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTcc                                                                                                                            >  2:1051577/1‑149 (MQ=255)                               ttCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTACTGGTGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGc                                                                                                                        >  1:635044/1‑149 (MQ=255)                               ttCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGc                                                                                                                        <  2:867559/149‑1 (MQ=255)                                    aTAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAAc                                                                                                                   >  1:444754/1‑149 (MQ=255)                                        aCCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGACGCACCGAGAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGCTTTTCCTGGCGTAACCaag                                                                                                               >  2:1432845/1‑149 (MQ=255)                                        aCCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCaag                                                                                                               >  1:903512/1‑149 (MQ=255)                                         ccGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCaaga                                                                                                              >  1:1336651/1‑149 (MQ=255)                                             aCTCACGCGATTTAACAGGAAAGGTAAGATCGGATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGtt                                                                                                          <  1:379379/149‑1 (MQ=255)                                               tCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGCTTTTCCTGGCGTAACCAAGAAGTTGa                                                                                                        >  1:488239/1‑149 (MQ=255)                                               tCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCAACGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGa                                                                                                        >  1:944582/1‑149 (MQ=255)                                                 aCGCGATTTAACAGTAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAAt                                                                                                      <  2:1422374/149‑1 (MQ=255)                                                 aCGCGATTTAACAGGAAAGGTAAGATCGTACCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAAt                                                                                                      <  1:247769/149‑1 (MQ=255)                                                    cgATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGcc                                                                                                   <  1:892653/149‑1 (MQ=255)                                                     gATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAAGATTAATGATGAGAAGGCCTCATCATTAAAACGCAGGATTTTTCTGGCGTAACAAAGAAGTTGAATGcac                                                                                                  >  2:51767/1‑147 (MQ=255)                                                     gATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTACCAAAGAAGTTGAATGCCa                                                                                                  >  2:1160403/1‑149 (MQ=255)                                                            cAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGCAAAATAGTTCGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTGAg                                                                                           >  2:370307/1‑149 (MQ=255)                                                             aGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGACGTTGAATGCCATGTTCAGt                                                                                          >  2:454265/1‑149 (MQ=255)                                                             aGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGt                                                                                          <  2:800156/149‑1 (MQ=255)                                                                 aaagTAAGATCGTATCGGCATATTCATCTGAAGCACCGATAGTTAATACGCCCTAAAAATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAAc                                                                                      <  1:51767/146‑1 (MQ=255)                                                                   ggTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGACCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAg                                                                                    >  2:1250991/1‑149 (MQ=255)                                                                     tAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTGGAATGCCATGTTCAGTTAACAGtt                                                                                  >  1:714819/1‑149 (MQ=255)                                                                         aTCGTATCGCCAGATTCATCTGAAGCACCGATAGTTAATACCCCCTGAAGATTACTGATCATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCGTCGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTttgtt                                                                              <  1:418209/149‑1 (MQ=255)                                                                                 ggCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGGTGCTACCGt                                                                      <  2:1103228/149‑1 (MQ=255)                                                                                  gCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTg                                                                     >  2:7544/1‑149 (MQ=255)                                                                                  gCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTg                                                                     >  1:870121/1‑149 (MQ=255)                                                                                  gCAGATTCATCTGAAGCACCGATAGTTAATACGCCCGGAAGGTTACGCAACGTTAATAATGAGCGGGCGTGCTGATTAAAACGCAGGATTTTCCTGGCGTAGCCAAGCAGTTGAATGCCATGGTGAGTTAACAGCTTGTTGCGACCgga                                                                     >  2:1169969/1‑147 (MQ=255)                                                                                    aGATTTATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTGATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGAc                                                                   <  2:338782/149‑1 (MQ=255)                                                                                    aGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGAc                                                                   <  1:1044986/149‑1 (MQ=255)                                                                                      aTTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGAcaa                                                                 >  2:874850/1‑147 (MQ=255)                                                                                        tCATCTGAAGTACCGATAGTTAATACGCCCTGAAGATTACGGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGc                                                               <  1:718082/149‑1 (MQ=255)                                                                                          aTCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTCCAGTTAACAGTTTGTTGCAACCGGCACGAGcac                                                             >  2:1431728/1‑147 (MQ=255)                                                                                           tCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGACCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTCACAGTTTGTTGCAACCGTGACGAGCGaa                                                            >  2:162985/1‑149 (MQ=255)                                                                                            cTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAAc                                                           >  1:734809/1‑149 (MQ=255)                                                                                              gAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGCTGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGCCAGTAACGGGCGTACAg                                                         >  2:36437/1‑149 (MQ=255)                                                                                                 gCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTc                                                      >  1:841668/1‑149 (MQ=255)                                                                                                       aTAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTc                                                  <  2:83623/147‑1 (MQ=255)                                                                                                       aTAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTc                                                  >  1:83623/1‑147 (MQ=255)                                                                                                             aaTACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAg                                          >  1:791464/1‑149 (MQ=255)                                                                                                              aTACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgt                                         >  2:1078608/1‑149 (MQ=255)                                                                                                                aCGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgttg                                       <  1:973086/149‑1 (MQ=255)                                                                                                                aCGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgttg                                       <  1:973068/149‑1 (MQ=255)                                                                                                                    ccTTAAGAATACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTcc                                   <  2:586102/149‑1 (MQ=255)                                                                                                                    ccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCaagaa                                                                                                             >  1:158336/1‑75 (MQ=255)                                                                                                                    ccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCaagaa                                                                                                             <  2:158336/75‑1 (MQ=255)                                                                                                                    ccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTcc                                   <  2:1045719/149‑1 (MQ=255)                                                                                                                     cTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCa                                  >  1:586373/1‑149 (MQ=255)                                                                                                                     cTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCa                                  <  2:596570/149‑1 (MQ=255)                                                                                                                      tGAAGATTACTGAACAGTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAg                                 >  1:1258897/1‑149 (MQ=255)                                                                                                                        aatactACTGAACATTAATGATGAGCAGGCCTCATAATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGAc                               <  1:306148/144‑1 (MQ=255)                                                                                                                        aataTTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCCGGAATTTACTCGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGAc                               <  2:879783/146‑1 (MQ=255)                                                                                                                             tACTGAACATTAAGGAGGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCTTAACTCAGAAGTTGAATGCCATGGTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGc                          <  2:881767/149‑1 (MQ=255)                                                                                                                                tgacaaTTAATGATGAGCAGGCATCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGACTTGTTACAGACGCTGCAtt                       >  2:679663/6‑149 (MQ=255)                                                                                                                                tGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTTCCAACGAATTGTTACAGACGCTGCCtt                       >  1:158091/1‑149 (MQ=255)                                                                                                                                tGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCAtt                       <  1:786409/149‑1 (MQ=255)                                                                                                                                  aaCATTAATGATGAGCAGGCCTCATCCTTCAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTg                     >  1:711451/1‑149 (MQ=255)                                                                                                                                    cATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCt                   >  1:582781/1‑149 (MQ=255)                                                                                                                                    cATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTCTCGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCt                   <  1:1135182/149‑1 (MQ=255)                                                                                                                                     aTTAATGATGAGCAGGTCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAAAGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACCAACGAACAATTCTTTCCCAACGAGTTTTTCCAGACGCTGCATTTGCtc                  >  2:455538/1‑148 (MQ=255)                                                                                                                                     aTTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAAc                                             >  1:1134853/1‑122 (MQ=255)                                                                                                                                     aTTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAAc                                             <  2:1134853/122‑1 (MQ=255)                                                                                                                                      ttAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGa                 <  2:841668/149‑1 (MQ=255)                                                                                                                                              gaGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGAAGCTGCATTTGCTGACTTAcggc         >  1:1316807/1‑149 (MQ=255)                                                                                                                                                 cAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGa      >  2:459110/1‑149 (MQ=255)                                                                                                                                                  aagCCTCATTATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGAc     <  2:575298/147‑1 (MQ=255)                                                                                                                                                   ggCCTCATCATTAAAACGCAGGATTTTCCGTGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGCCGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACt    <  2:1059669/149‑1 (MQ=255)                                                                                                                                                     ccTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGa  <  1:411108/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TTACGTTTAACGCGGACATCCAGCGCTAATTTCGGATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGA  >  NC_000913_3_pae_tpiA/2406232‑2406528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.