New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3792764	88 (1.070)	5 (0.070)	5/262	6.7	5.6%	intergenic (‑213/+62)	kbl/yibB	glycine C‑acetyltransferase/YibB family protein, function unknown
	?	NC_000913_3_pae_tpiA	= 3792768	86 (1.130)					intergenic (‑217/+58)	kbl/yibB	glycine C‑acetyltransferase/YibB family protein, function unknown
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACGCGTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAACAAATCGAA  >  NC_000913_3_pae_tpiA/3792616‑3792906                                                                                                                                                     |                                                                                                                                               aaCGCGTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATACTGATGATTGATTTTACTGCATTGATCTAAAAACAAAAAATGATGc                                                                                                                                                >  2:718775/1‑149 (MQ=255)    gcgTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCaa                                                                                                                                             >  1:1185202/1‑149 (MQ=255)       ttAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGc                                                                                                                                          >  2:366175/1‑149 (MQ=255)        tAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTCGAGAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCCTTGATATAAAAAGAAAAAATGATGCGAAATca                                                                                                                                         >  1:343406/1‑149 (MQ=255)          acacTTCTTCAATATTCATGATAAATAACGTGTAACTTGATGTCTCTCAACAGCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGcatc                                                                                                                                       <  1:166300/149‑1 (MQ=255)              tcatGCAAAATTAAGGATAAATAACGTGTAACTTGATGTATCTCAACACCTAAAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATTATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCAttt                                                                                                                                   <  2:608112/146‑1 (MQ=255)               tCTGCAAAAGTCAGGATAAACCACGTGAAACTGGATGTCTCTCAACACTTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCTTTGGCATCAtttt                                                                                                                                  <  1:753849/149‑1 (MQ=255)                 ttcAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACATACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTc                                                                                                                                <  1:808242/147‑1 (MQ=255)                  gCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAGAAAATGATGCCAAAGCATCATTTTTcc                                                                                                                               <  2:1384025/149‑1 (MQ=255)                    aaaaTTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATCTAAAAAGAAAAAATGATGCCAAAACTTCTTTTTTTCTa                                                                                                                             >  2:1259998/1‑149 (MQ=255)                    aaaaTTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTa                                                                                                                             <  1:366175/149‑1 (MQ=255)                        ttCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATAATTTTTCCTAtctc                                                                                                                         >  1:774136/1‑149 (MQ=255)                         tCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCa                                                                                                                        >  1:914657/1‑149 (MQ=255)                         tCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCa                                                                                                                        <  1:1311120/149‑1 (MQ=255)                          cAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCGACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAg                                                                                                                       <  1:1322142/149‑1 (MQ=255)                            ggATAAATAACTTGGAACTTGATGGCTTTAAAACCCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGTATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATGTTGCCTATCTCAGtt                                                                                                                     <  2:895539/149‑1 (MQ=255)                            ggATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGtt                                                                                                                     <  2:1144813/149‑1 (MQ=255)                             gATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCCTTGATATAAAAAGAAAAAATGATGCCCAAGCATCATTTTTCCTATCTCAGTTg                                                                                                                    >  1:299507/1‑149 (MQ=255)                                       gtgtAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCaaaaa                                                                                                          >  2:1380253/1‑148 (MQ=255)                                          tAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCt                                                                                                       >  1:865209/1‑149 (MQ=255)                                           aaCTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTATTGGCAGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTa                                                                                                      <  2:343406/149‑1 (MQ=255)                                            aCTTGATGTCTCTCAACGCCTACAGATAGTAGAAAAACGGGACAGGTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTAc                                                                                                     <  2:201101/149‑1 (MQ=255)                                            aCTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTAc                                                                                                     >  1:926583/1‑149 (MQ=255)                                             cTTGATGTCTTTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTAcc                                                                                                    <  1:1197986/149‑1 (MQ=255)                                                gATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCAc                                                                                                 <  1:537867/149‑1 (MQ=255)                                                   gTCTCTCAACACCTACAGTTAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCACAGTTGGTATCAAAACGCTACCCACTaa                                                                                              <  1:1075098/149‑1 (MQ=255)                                                     ctctgAACACCTACAGATAGGAGAAAAACTTTAGATTTTTGGCTGGTCATAATTATGATTGATTTTACTTCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATg                                                                                            <  2:708039/149‑1 (MQ=255)                                                     ctctcAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATg                                                                                            <  1:1178837/149‑1 (MQ=255)                                                      tctcAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATCTAAACAGGAAAAATGATGCCAAAGCATCATTTTTCCTATCCCCGTTGGTATCAAACCGCTACCCACTactcg                                                                                           >  2:258245/1‑145 (MQ=255)                                                       ctcAACACCTACAGATAGTAGAAAAATTGTCGAGATATGGCTTTGCAGAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGa                                                                                          <  2:664202/149‑1 (MQ=255)                                                        tcAACACCTACTGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAg                                                                                         <  1:1322671/149‑1 (MQ=255)                                                        tcAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAg                                                                                         >  2:1440485/1‑149 (MQ=255)                                                          aaCACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCCGTTGGTATCACAACGCTTCCGTTTAATGTAggg                                                                                       >  2:1364216/1‑149 (MQ=255)                                                            cacCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGaa                                                                                     <  1:1128055/149‑1 (MQ=255)                                                              ccgaCAGATAGGAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAAc                                                                                   <  2:1014559/146‑1 (MQ=255)                                                              catACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAAc                                                                                   <  2:1014470/147‑1 (MQ=255)                                                               cTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAAcc                                                                                  >  2:188125/1‑149 (MQ=255)                                                               cTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCAATCTCAATTGTTATCAAAACACTACCCACTAATGGATGGCAAcc                                                                                  >  2:993069/1‑149 (MQ=255)                                                                tACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCt                                                                                 >  1:119278/1‑149 (MQ=255)                                                                    gATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTAttt                                                                             <  1:156084/149‑1 (MQ=255)                                                                     aTAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGa                                                                                          >  2:149218/1‑135 (MQ=255)                                                                     aTAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGa                                                                                          <  1:149218/135‑1 (MQ=255)                                                                     aTAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTAtttt                                                                            >  2:892744/1‑149 (MQ=255)                                                                     aTAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTAtttt                                                                            <  2:119278/149‑1 (MQ=255)                                                                        gtagAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCtt                                                                         <  1:1140209/149‑1 (MQ=255)                                                                        gtaaAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAGATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCtt                                                                         <  2:1222023/149‑1 (MQ=255)                                                                         tagAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAAAGCTACCCACTAATGGAGGAAAACCTATTTTCTTg                                                                        >  1:909431/1‑149 (MQ=255)                                                                           gAAAAATGGTACAGTTTTGGCTGGGTATAATGATGATTGAGTCTTCTGCATTGATATAAAAAGAACAAATGATGCCATAGCATCATTTTTCCTATCTCATTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGaa                                                                      <  1:337694/149‑1 (MQ=255)                                                                           gAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGaa                                                                      >  1:865309/1‑149 (MQ=255)                                                                           gAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGaa                                                                      >  1:157343/1‑149 (MQ=255)                                                                           gAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGaa                                                                      >  2:355517/1‑149 (MQ=255)                                                                            aaaaaCTGTACAGTTTTGGCTGGGCATAATGAGGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGaaa                                                                     <  1:369672/149‑1 (MQ=255)                                                                            aaaaaCTGTACAGTTGTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGaaa                                                                     <  2:731187/149‑1 (MQ=255)                                                                                  tgcaCAGTTTTGGGTGGGTATAAAGAGGATTGGCTGTACTTCATTGATATAAACAGAAAAAATTATGCCACAGCATCATTTTTCCTTTCTCAGTTGGCATCAAAACGCTACCCACTAATGGCAGGACACCTTGTTTCTTGCAGGGaaat                                                               <  2:317268/146‑2 (MQ=255)                                                                                  tGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGAAATCCAAGCATAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGaaaa                                                               <  1:1058472/149‑1 (MQ=255)                                                                                   gTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACGGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAAt                                                              >  2:1266343/1‑149 (MQ=255)                                                                                    tACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAAtt                                                             >  1:225638/1‑149 (MQ=255)                                                                                       aGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTAcc                                                                                                    >  2:321931/1‑107 (MQ=255)                                                                                       aGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTAcc                                                                                                    <  1:321931/107‑1 (MQ=255)                                                                                               gtGGGCATAATGATCATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGTATCATTTTTCCTATCTCAGTTGGTACCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTg                                                  <  1:1138810/148‑1 (MQ=255)                                                                                                tGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGGAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGc                                                 >  2:1354631/1‑149 (MQ=255)                                                                                                tGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGc                                                 >  1:699414/1‑149 (MQ=255)                                                                                                  ggCATAATGATGATTGATTTTACTGCAGTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTGTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCAt                                               <  2:539282/149‑1 (MQ=255)                                                                                                      tAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCAttttt                                           <  1:356207/149‑1 (MQ=255)                                                                                                      tAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACGAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCAttttt                                           <  1:950237/149‑1 (MQ=255)                                                                                                       aaTGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTg                                          <  1:745817/149‑1 (MQ=255)                                                                                                        atgatgATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGc                                         <  2:722055/149‑1 (MQ=255)                                                                                                        atgatgATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGc                                         <  2:1353305/149‑1 (MQ=255)                                                                                                         tgatgaTTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGcc                                        <  1:1440485/149‑1 (MQ=255)                                                                                                          gatgatTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGccc                                       <  2:1180455/149‑1 (MQ=255)                                                                                                           aatattgattTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGATAATTCTCAGCGCCTGCATTTTTGcccc                                      <  2:1420585/146‑1 (MQ=255)                                                                                                            tgattgatTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCt                                     >  1:513414/1‑149 (MQ=255)                                                                                                              attgattTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTaa                                   >  2:1166363/1‑149 (MQ=255)                                                                                                               ttgcttTGACGGCATTGATCAGAGAAGAAAAAATCATACCACAACTTTATTGTTCCTATCTCATTTTGTATCAAAACGCTACCCACTAATGGAGGGACACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTaaa                                  <  2:230988/149‑1 (MQ=255)                                                                                                               ttgattTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATgg                                                                                           <  2:1358523/92‑1 (MQ=255)                                                                                                               ttgattTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATgg                                                                                           >  1:1358523/1‑92 (MQ=255)                                                                                                                   ttttACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGCAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAgtgt                              <  1:1005293/149‑1 (MQ=255)                                                                                                                      tACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTAGCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGCAACGAAAATTCTCACCGCCTGCATTTTTGCCCCTAAAGTGTTAc                           <  2:708853/149‑1 (MQ=255)                                                                                                                        cTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTc                         >  1:1213748/1‑149 (MQ=255)                                                                                                                             tttatatAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGaa                    <  1:827812/146‑1 (MQ=255)                                                                                                                                   taAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCg              >  1:1134613/1‑149 (MQ=255)                                                                                                                                     aaaaGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCTCTAAAGTGTTACTCCTGAAGCAGCGaa            >  2:1021305/1‑149 (MQ=255)                                                                                                                                      aaaGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAgtgt                              >  2:1247759/1‑130 (MQ=255)                                                                                                                                      aaaGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAgtgt                              <  1:1247759/130‑1 (MQ=255)                                                                                                                                       aaGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAACGGAAACAGCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAAc          >  1:766033/1‑149 (MQ=255)                                                                                                                                       aaGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGACAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAAc          <  1:1364216/149‑1 (MQ=255)                                                                                                                                         caaaaaaTGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGAATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAACGGAAAAATCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAACaa        >  2:1097480/2‑149 (MQ=255)                                                                                                                                          aaaaaaTGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAACaaa       <  1:1166363/149‑1 (MQ=255)                                                                                                                                            aaaaGGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAACGGATGGTGCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAACAAATc     <  1:1288817/149‑1 (MQ=255)                                                                                                                                               atgatgCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAACAAATCGaa  <  2:367805/149‑1 (MQ=255)                                                                                                                                               atgatgCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAACAAATCGaa  >  2:1108173/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               AACGCGTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACTAATGGAGGGAAACCTATTTTCTTGAAAGGAAAATTCTCAGCGCCTGCATTTTTGCCCCTAAAGTGTTACTCCTGAAGCAGCGAAACAAATCGAA  >  NC_000913_3_pae_tpiA/3792616‑3792906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.