New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2860427	26 (0.790)	5 (0.160)	5/266	3.7	16.9%	intergenic (+11/+40)	pphB/ygbI	serine/threonine‑specific protein phosphatase 2/DeoR family putative transcriptional regulator
	?	NC_000913_3_pae_tpiA	= 2860433	25 (0.820)					intergenic (+17/+34)	pphB/ygbI	serine/threonine‑specific protein phosphatase 2/DeoR family putative transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTACAACAAATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCAAACTCGCTTAATG  >  NC_000913_3_pae_tpiA/2860279‑2860573                                                                                                                                                     |                                                                                                                                                   ttACAACAAATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTGCGCTAACCAGATTCATATTAATCACGGATAACCGACCAGCGGGCGGCTGTCATTTTATAAAATAAAATAGTCTCATGcttc                                                                                                                                                    >  1:173636/1‑149 (MQ=255)    caacaaATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCttcttc                                                                                                                                                 <  2:311990/149‑1 (MQ=255)     aacaaATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGGAGTCTCATGATtcttct                                                                                                                                                >  1:147039/1‑149 (MQ=255)       caaATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTGAGACGTTCGCGAACCAGATTTATATTGATACGGGAGCGCCGAACAGCGGGCGGCTGTCATTTTGTAAAATAAAGTAGACTCATTCTTCTTgtgt                                                                                                                                              >  2:453023/1‑149 (MQ=255)        aaaTAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCtgtg                                                                                                                                             >  2:571085/1‑149 (MQ=255)              aCGGCGCTTATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTCTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCAt                                                                                                                                       <  1:281482/149‑1 (MQ=255)                                      gACATATTATGTTTGCTAACATTCAGACGTTCCCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGACTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGc                                                                                                               <  1:273502/149‑1 (MQ=255)                                      gACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGCGTTATTGCAGGc                                                                                                               <  1:35273/149‑1 (MQ=255)                                                      tAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGGCATTATTCATTTTTCg                                                                                               >  1:317174/1‑149 (MQ=255)                                                                         aaCCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATc                                                                            >  1:416373/1‑149 (MQ=255)                                                                               aTTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCtt                                                                      >  1:482618/1‑149 (MQ=255)                                                                                   atacTGACACCGGATCGCCGAACAGCGGTCGGCTGTCATTTGATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCATGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCAcc                                                                  <  1:120043/149‑1 (MQ=255)                                                                                    tatTGATACCGGATCGCCGAAGAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCa                                                                 <  2:343462/149‑1 (MQ=255)                                                                                    tatTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGGTAGTGCAGGCCCTTATTCATTTTTCGCTCCCAGCAAAGAGAGATCCTGCTTCACCa                                                                 <  2:552556/149‑1 (MQ=255)                                                                                     atTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCattatt                                                                                                        >  2:217702/1‑109 (MQ=255)                                                                                     atTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCattatt                                                                                                        <  1:217702/109‑1 (MQ=255)                                                                                        gATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAgcgc                                                             >  1:229923/1‑149 (MQ=255)                                                                                               gATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTg                                                      <  2:419140/149‑1 (MQ=255)                                                                                                            cgggcggCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCA‑TTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCag                                        >  1:443216/1‑148 (MQ=255)                                                                                                                   cTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTAATTACAGGCCTTTATTCATTTTTCGCTAGCAGCAACTAGAGACCCAGCATCACCAGCGCGCGACTGGCACTCTCGGCCAAACcgtc                                  >  2:320398/1‑149 (MQ=255)                                                                                                                       cATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCt                              >  2:95810/1‑149 (MQ=255)                                                                                                                        aTTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTg                             >  1:33333/1‑149 (MQ=255)                                                                                                                         ttttATAAAATAAAGTGGTCTCATGTTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGt                            <  2:147039/149‑1 (MQ=255)                                                                                                                                    aaaGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGAt                 <  2:229923/149‑1 (MQ=255)                                                                                                                                        tagtCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCaaa             <  1:6837/149‑1 (MQ=255)                                                                                                                                          gtCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCAAACt           <  1:95810/149‑1 (MQ=255)                                                                                                                                                   ttcttcTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCTTCTGTAATAATCTGATCAAACTCGCTTAATg  >  2:258209/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTACAACAAATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCAAACTCGCTTAATG  >  NC_000913_3_pae_tpiA/2860279‑2860573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.