New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2860427	26 (0.790)	5 (0.160)	5/266	3.7	16.9%	intergenic (+11/+40)	pphB/ygbI	serine/threonine‑specific protein phosphatase 2/DeoR family putative transcriptional regulator
	?	NC_000913_3_pae_tpiA	= 2860433	25 (0.820)					intergenic (+17/+34)	pphB/ygbI	serine/threonine‑specific protein phosphatase 2/DeoR family putative transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCAAACTCGCTTAATGGTAAC  >  NC_000913_3_pae_tpiA/2860285‑2860578                                                                                                                                                     |                                                                                                                                                  caaATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTGAGACGTTCGCGAACCAGATTTATATTGATACGGGAGCGCCGAACAGCGGGCGGCTGTCATTTTGTAAAATAAAGTAGACTCATTCTTCTTgtgt                                                                                                                                                   >  2:453023/1‑149 (MQ=255)  aaaTAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCtgtg                                                                                                                                                  >  2:571085/1‑149 (MQ=255)        aCGGCGCTTATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTCTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCAt                                                                                                                                            <  1:281482/149‑1 (MQ=255)                                gACATATTATGTTTGCTAACATTCAGACGTTCCCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGACTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGc                                                                                                                    <  1:273502/149‑1 (MQ=255)                                gACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGCGTTATTGCAGGc                                                                                                                    <  1:35273/149‑1 (MQ=255)                                                tAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGGCATTATTCATTTTTCg                                                                                                    >  1:317174/1‑149 (MQ=255)                                                                   aaCCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATc                                                                                 >  1:416373/1‑149 (MQ=255)                                                                         aTTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCtt                                                                           >  1:482618/1‑149 (MQ=255)                                                                             atacTGACACCGGATCGCCGAACAGCGGTCGGCTGTCATTTGATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCATGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCAcc                                                                       <  1:120043/149‑1 (MQ=255)                                                                              tatTGATACCGGATCGCCGAAGAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCa                                                                      <  2:343462/149‑1 (MQ=255)                                                                              tatTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGGTAGTGCAGGCCCTTATTCATTTTTCGCTCCCAGCAAAGAGAGATCCTGCTTCACCa                                                                      <  2:552556/149‑1 (MQ=255)                                                                               atTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCattatt                                                                                                             <  1:217702/109‑1 (MQ=255)                                                                               atTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCattatt                                                                                                             >  2:217702/1‑109 (MQ=255)                                                                                  gATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAgcgc                                                                  >  1:229923/1‑149 (MQ=255)                                                                                         gATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTg                                                           <  2:419140/149‑1 (MQ=255)                                                                                                      cgggcggCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCA‑TTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCag                                             >  1:443216/1‑148 (MQ=255)                                                                                                             cTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTAATTACAGGCCTTTATTCATTTTTCGCTAGCAGCAACTAGAGACCCAGCATCACCAGCGCGCGACTGGCACTCTCGGCCAAACcgtc                                       >  2:320398/1‑149 (MQ=255)                                                                                                                 cATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCt                                   >  2:95810/1‑149 (MQ=255)                                                                                                                  aTTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTg                                  >  1:33333/1‑149 (MQ=255)                                                                                                                   ttttATAAAATAAAGTGGTCTCATGTTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGt                                 <  2:147039/149‑1 (MQ=255)                                                                                                                              aaaGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGAt                      <  2:229923/149‑1 (MQ=255)                                                                                                                                  tagtCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCaaa                  <  1:6837/149‑1 (MQ=255)                                                                                                                                    gtCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCAAACt                <  1:95810/149‑1 (MQ=255)                                                                                                                                             ttcttcTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCTTCTGTAATAATCTGATCAAACTCGCTTAATg       >  2:258209/1‑149 (MQ=255)                                                                                                                                               ctcctGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCAAACTCGCTTAATGGt     <  1:124316/146‑1 (MQ=255)                                                                                                                                                ttctGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATc                     >  2:366452/1‑132 (MQ=255)                                                                                                                                                ttctGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATc                     <  1:366452/132‑1 (MQ=255)                                                                                                                                                  ttgtgAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTTCCGCAAACCGTCGTCTGTAATAATCTGATCAAACTCGCTTAATGGTAAc  <  2:240482/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CAAATAAACGGCGCTGATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTTCTGTGAAGCATGAGTAACCCGGTGTTATTGCAGGCCATTATTCATTTTTCGCTACCAGCAAAGAGAGATCCTGCTTCACCAGCGCGCGACTGGCACTCTCCGGCAAACCGTCGTCTGTAATAATCTGATCAAACTCGCTTAATGGTAAC  >  NC_000913_3_pae_tpiA/2860285‑2860578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.