New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4125304 =	46 (1.400)	4 (0.130)	4/276	4.3	8.1%	coding (1423/2199 nt)	priA	Primosome factor n' (replication factor Y)
	?	NC_000913_3_pae_tpiA	4125360 =	47 (1.480)					coding (1367/2199 nt)	priA	Primosome factor n' (replication factor Y)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTT  >  NC_000913_3_pae_tpiA/4125158‑4125451                                                                                                                                                   |                                                                                                                                                    cTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGAGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgc                                                                                                                                                   >  1:74414/1‑149 (MQ=255)   gTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGCGGAAAAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGGGGAACCGCAGGAAGGGCACTCgcgc                                                                                                                                                 >  1:161194/1‑149 (MQ=255)        aGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGACGGGCACTGGCGCGGccc                                                                                                                                            >  2:220681/1‑147 (MQ=255)         gcgcCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCAcc                                                                                                                                           >  2:209735/1‑149 (MQ=255)                     ggCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTg                                                                                                                               >  1:17769/1‑149 (MQ=255)                       ggggtgctATCGGGGTCGAAACGAGAATTGGGCACGCTGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTc                                                                                                                             <  2:48856/147‑1 (MQ=255)                         ggtggtATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTcac                                                                                                                           >  2:292184/1‑149 (MQ=255)                             gtATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAgtg                                                                                                                       >  2:29841/1‑149 (MQ=255)                               aTCGCGGTCGATACGGGAAATGGGCACGTCGGGGGACAACGTGGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAgtggt                                                                                                                     <  1:13560/149‑1 (MQ=255)                                tCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTAGCGCGGCACCGGACGCTGACTGTCACAgtggtg                                                                                                                    >  2:447537/1‑149 (MQ=255)                                        gATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCa                                                                                                            <  1:447288/149‑1 (MQ=255)                                         aTACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAg                                                                                                           >  2:337650/1‑149 (MQ=255)                                          tACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGa                                                                                                          >  1:322162/1‑149 (MQ=255)                                               gaAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGtg                                                                                                     <  1:29841/149‑1 (MQ=255)                                                  aTGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGtgctg                                                                                                  >  1:96327/1‑149 (MQ=255)                                                               ggAACAACTGCGCGAGCGTCTGTTCAAGCGGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGc                                                                                     <  2:352054/149‑1 (MQ=255)                                                                gAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCg                                                                                    >  1:228011/1‑149 (MQ=255)                                                                     acGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTgtag                                                                               <  2:228011/149‑1 (MQ=255)                                                                        gcgcGAGTGTCTGTTCAAGCTGTACGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGtagtag                                                                            <  2:511704/149‑1 (MQ=255)                                                                           cgAGCGCCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGa                                                                         <  2:10891/149‑1 (MQ=255)                                                                                gTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCa                                                                    >  2:336769/1‑149 (MQ=255)                                                                                gTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCa                                                                    >  2:198032/1‑149 (MQ=255)                                                                                 tCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCaa                                                                   <  1:379312/149‑1 (MQ=255)                                                                                        aaGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGGTGGTGCTGCGCCTGATGCACCCTGTAGTAGTGATCGCGAAGTGGGc                                                            >  1:263742/1‑149 (MQ=255)                                                                                                 ggTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCaa                                                   <  2:322162/149‑1 (MQ=255)                                                                                                 ggTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCaa                                                   <  2:525397/149‑1 (MQ=255)                                                                                                 ggTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGAAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCaa                                                   >  2:530875/1‑149 (MQ=255)                                                                                                       cAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGc                                             >  1:456073/1‑149 (MQ=255)                                                                                                          ccccACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCcac                                          >  2:431113/1‑149 (MQ=255)                                                                                                               cGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCg                                     >  2:503641/1‑149 (MQ=255)                                                                                                               cGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCGGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACCGTCg                                     >  2:494715/1‑149 (MQ=255)                                                                                                                gggcACCAGGGGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGt                                    <  1:58648/149‑1 (MQ=255)                                                                                                                  ggACCAGGTGCGTGGAACCGCAGGAAGGGCACCGGCGCGGCACCGGCCGCTGACTGTCACAGTGGTGGCAGCGCAGATGGCGCTGCGCCTGATGCAGCGAGTAGTAGTGATCGCAACGGGGGCATTCGGCACTCCAGCCACAgaccgtg                                  >  2:526815/1‑143 (MQ=255)                                                                                                                     ccAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGGGGGCATTCGGCACTCCAGCCACAGTCGTGGcac                               >  1:141322/1‑149 (MQ=255)                                                                                                                      cAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTAGGAAATCCCGCCACAGTCGTGGcaca                              >  2:287777/1‑149 (MQ=255)                                                                                                                              tGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCa                      >  1:555536/1‑149 (MQ=255)                                                                                                                              tGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCa                      <  1:530875/149‑1 (MQ=255)                                                                                                                                   ccGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGCTGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGgcgc                 >  1:238639/1‑149 (MQ=255)                                                                                                                                   ccGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGgcgc                 >  2:451197/1‑149 (MQ=255)                                                                                                                                      cAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCATATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCaaa              <  1:396540/149‑1 (MQ=255)                                                                                                                                      cAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCaaa              <  1:336769/149‑1 (MQ=255)                                                                                                                                            gggCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCAcg        >  1:275867/1‑149 (MQ=255)                                                                                                                                              gCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAGGCGAgggc      >  2:573548/1‑149 (MQ=255)                                                                                                                                                  tGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGGGTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAGAGCCACGGCGGtt  >  1:541971/1‑149 (MQ=255)                                                                                                                                                  tGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGtt  <  1:325429/149‑1 (MQ=255)                                                                                                                                                  tGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGtt  <  1:324930/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTT  >  NC_000913_3_pae_tpiA/4125158‑4125451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.