New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4125304 =	46 (1.400)	4 (0.130)	4/276	4.3	8.1%	coding (1423/2199 nt)	priA	Primosome factor n' (replication factor Y)
	?	NC_000913_3_pae_tpiA	4125360 =	47 (1.480)					coding (1367/2199 nt)	priA	Primosome factor n' (replication factor Y)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAA  >  NC_000913_3_pae_tpiA/4125220‑4125508                                                                                                                                             |                                                                                                                                                     ggAACAACTGCGCGAGCGTCTGTTCAAGCGGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGc                                                                                                                                              <  2:352054/149‑1 (MQ=255)  gAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCg                                                                                                                                             >  1:228011/1‑149 (MQ=255)       acGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTgtag                                                                                                                                        <  2:228011/149‑1 (MQ=255)          gcgcGAGTGTCTGTTCAAGCTGTACGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGtagtag                                                                                                                                     <  2:511704/149‑1 (MQ=255)             cgAGCGCCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGa                                                                                                                                  <  2:10891/149‑1 (MQ=255)                  gTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCa                                                                                                                             >  2:336769/1‑149 (MQ=255)                  gTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCa                                                                                                                             >  2:198032/1‑149 (MQ=255)                   tCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCaa                                                                                                                            <  1:379312/149‑1 (MQ=255)                          aaGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGGTGGTGCTGCGCCTGATGCACCCTGTAGTAGTGATCGCGAAGTGGGc                                                                                                                     >  1:263742/1‑149 (MQ=255)                                   ggTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCaa                                                                                                            <  2:525397/149‑1 (MQ=255)                                   ggTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCaa                                                                                                            <  2:322162/149‑1 (MQ=255)                                   ggTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGAAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCaa                                                                                                            >  2:530875/1‑149 (MQ=255)                                         cAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGc                                                                                                      >  1:456073/1‑149 (MQ=255)                                            ccccACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCcac                                                                                                   >  2:431113/1‑149 (MQ=255)                                                 cGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCg                                                                                              >  2:503641/1‑149 (MQ=255)                                                 cGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCGGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACCGTCg                                                                                              >  2:494715/1‑149 (MQ=255)                                                  gggcACCAGGGGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGt                                                                                             <  1:58648/149‑1 (MQ=255)                                                    ggACCAGGTGCGTGGAACCGCAGGAAGGGCACCGGCGCGGCACCGGCCGCTGACTGTCACAGTGGTGGCAGCGCAGATGGCGCTGCGCCTGATGCAGCGAGTAGTAGTGATCGCAACGGGGGCATTCGGCACTCCAGCCACAgaccgtg                                                                                           >  2:526815/1‑143 (MQ=255)                                                       ccAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGGGGGCATTCGGCACTCCAGCCACAGTCGTGGcac                                                                                        >  1:141322/1‑149 (MQ=255)                                                        cAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTAGGAAATCCCGCCACAGTCGTGGcaca                                                                                       >  2:287777/1‑149 (MQ=255)                                                                tGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCa                                                                               >  1:555536/1‑149 (MQ=255)                                                                tGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCa                                                                               <  1:530875/149‑1 (MQ=255)                                                                     ccGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGCTGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGgcgc                                                                          >  1:238639/1‑149 (MQ=255)                                                                     ccGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGgcgc                                                                          >  2:451197/1‑149 (MQ=255)                                                                        cAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCATATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCaaa                                                                       <  1:396540/149‑1 (MQ=255)                                                                        cAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCaaa                                                                       <  1:336769/149‑1 (MQ=255)                                                                              gggCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCAcg                                                                 >  1:275867/1‑149 (MQ=255)                                                                                gCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAGGCGAgggc                                                               >  2:573548/1‑149 (MQ=255)                                                                                    tGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGGGTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAGAGCCACGGCGGtt                                                           >  1:541971/1‑149 (MQ=255)                                                                                    tGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGtt                                                           <  1:325429/149‑1 (MQ=255)                                                                                    tGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGtt                                                           <  1:324930/149‑1 (MQ=255)                                                                                        gcgGAACCGGACGCTGACTGTCAAAGGCGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTaaga                                                       <  2:263742/149‑1 (MQ=255)                                                                                          ggCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTaagaaa                                                     <  1:220681/149‑1 (MQ=255)                                                                                             aCCGGACGCTGACTGTCACCGTGGTGGCCGCGCAGATGGTGCTGCGCCTGATGCAGCGAGTAAGAGTGATCGCCACGTGGGCATTCGGCAATCCACCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGACGGCTAAGAAagag                                                  >  2:161433/1‑149 (MQ=255)                                                                                                   cGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGCTGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGAc                                            <  1:506790/149‑1 (MQ=255)                                                                                                          tGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTaaga                                                       <  1:102259/131‑1 (MQ=255)                                                                                                          tGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTaaga                                                       >  2:102259/1‑131 (MQ=255)                                                                                                          tGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGGTa                                     >  1:71822/1‑149 (MQ=255)                                                                                                            tCACAGGGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATc                                   <  2:161194/149‑1 (MQ=255)                                                                                                               caGCGGTGGCAGCGCAGATGTGGCTGCGCCTTACGCAGCCTTTAGTACTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCCTGCCACAGCAGTGCAGGCGCAAAGCCACGGCGATTAAGAAAGAGAATGACCTGGTTATCAGc                                <  1:337650/149‑1 (MQ=255)                                                                                                                 tggttggCAGCGCAGTTGGTGCTGAGACTTATGCATCTTGTAGTAGGGATCGCCACCTGGGACTTCTGCAATCCAGCCAGCTTCGTGGCACAGCACCGCAGGCGCGAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCt                              <  2:190036/145‑1 (MQ=255)                                                                                                                       gCAGCGCAGATGGTGCTGCGCCTGATGCAGCCTGTAATAGTCGTCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCTTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAAt                        <  1:537107/149‑1 (MQ=255)                                                                                                                          gcgcGGGTGGTGCTGGGCCTGAGGGAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCt                     <  2:160056/149‑1 (MQ=255)                                                                                                                              aGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCCACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTCTCAGCCTGTAAATGCTGgcg                 >  2:333670/1‑149 (MQ=255)                                                                                                                              aGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGgcg                 <  1:431113/149‑1 (MQ=255)                                                                                                                               gATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGgccc                >  2:125455/1‑147 (MQ=255)                                                                                                                                 tGGTGCCGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGCTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCAt              <  2:17769/149‑1 (MQ=255)                                                                                                                                  ggtgtcgcgcCTGAGGCATCGTGTATTATGGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATa             <  2:74414/143‑1 (MQ=255)                                                                                                                                       tgcGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCCGTAAATGCTGGCGCATACGAGt        >  2:182877/1‑149 (MQ=255)                                                                                                                                         cgcCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCACTCCCCCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGa      <  1:16571/149‑1 (MQ=255)                                                                                                                                           ccTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGAtt    <  1:531762/149‑1 (MQ=255)                                                                                                                                             tGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCGCAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATCCGAGTGATTaa  >  2:501079/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                     GGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAA  >  NC_000913_3_pae_tpiA/4125220‑4125508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.