New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 389523334 (0.930)6 (0.180) 6/262 3.7 16.4% intergenic (+15/+39) chrR/adeP chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
?NC_000913_3_pae_tpiA = 3895244 30 (0.900)intergenic (+26/+28) chrR/adeP chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3895075‑3895233
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacccgccaTGCATGATTGCTGGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAAACTCACCAAATGCGGTCAATTGCCCGGTCAGGTGGTCCAGCGTACCCTGATCAATCACTTCTCCGGTTTGCGGATCAACTTTGTTCTGAATCACGC  <  NC_000913_3_pae_tpiA/3895244‑3895100
                                                                                                                                                                                                                                                                                                                
ATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAGCCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAATTAAA                                                                                                                                                             <  2:489857/149‑1
   AACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGAGCTAAATAAAAAA                                                                                                                                                          >  1:514824/1‑149
     CAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAACCC                                                                                                                                                        >  2:451614/1‑149
      AAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCC                                                                                                                                                       >  2:218855/1‑149
         CCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGCGTTAAGATCTAAATAAACAACCCGCC                                                                                                                                                    >  2:300010/1‑149
                               aaCAGAACAAAGTTGTTGCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCCCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCATGCATGATTGCTGGCGGGTTT                                                                                                                              <  2:514824/147‑1
                                   GAACAAAGTTGATCCGCAAACCGGAGAAGGGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCATGCATGATTGCTGGCGGGTTTTTTA                                                                                                                          <  2:420886/149‑1
                                                                                GCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCATGCATGATTGCTGGCGGGTTTT                                                                                                                             <  1:30453/101‑1
                                                                                GCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCATGCATGATTGCTGGCGGGTTTT                                                                                                                             >  2:30453/1‑101
                                                                                    GACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCATGCATGATTGCTGGCGG                                                                                                                                  >  1:247054/1‑92
                                                                                    GACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCATGCATGATTGCTGGCGG                                                                                                                                  <  2:247054/92‑1
                                                                                                                                                    AAAACCCGCCATGCATGATTGCTGGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAAACTCACCAAATGCGGTCAATTGCCCGGTCAGGTGGTCCAGCGTACCCTGATCAATCACTTCTCCGGTTTGCGGATCAAATTTGTTCTaa         >  2:1597/1‑147
                                                                                                                                                      atCCCGCCATGCATTATTCCTGGCGGTTTTTTTATTTAGATCTTAACTCGTTGAATACACTTACCAAATGCGGTCAATTGCGCGGTCAGGGGGTCCAGCGTACCCTGATCAATCACTTCTCCGGTTTGCGGATCAACTTTGTTCTGAAT       <  1:86984/147‑1
                                                                                                                                                           GCCATGCATGATTGCTGGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAAACTCACCAAATGCGGTCAATTACCCGGTCAGGTGGTCCAGCGTACCCTGATCAATCACTTCTCCGGTTTGCGAATCAACTTTGTTCTGAATCACGC  >  2:572289/1‑149
                                                                                                                                                                                                                                                                                                                
ATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3895075‑3895233
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacccgccaTGCATGATTGCTGGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAAACTCACCAAATGCGGTCAATTGCCCGGTCAGGTGGTCCAGCGTACCCTGATCAATCACTTCTCCGGTTTGCGGATCAACTTTGTTCTGAATCACGC  <  NC_000913_3_pae_tpiA/3895244‑3895100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.