New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3895233	34 (0.930)	6 (0.180)	6/262	3.7	16.4%	intergenic (+15/+39)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
	?	NC_000913_3_pae_tpiA	= 3895244	30 (0.900)					intergenic (+26/+28)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAG  >  NC_000913_3_pae_tpiA/3895086‑3895380                                                                                                                                                    |                                                                                                                                                    ggAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATGAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGAGAGATTATTCAACGAGATAAGATCTAAATAAAAAACACGCCAg                                                                                                                                                    >  1:20758/1‑149 (MQ=255)               gcgTGATTCAGAACAAAGTTGATTCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGTAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGc                                                                                                                                      <  2:572289/149‑1 (MQ=255)                    aTTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCCCCTGACCGCGCAATTGACCGCATTTGGTAAGTGTATTCAACGAGTTAAGATCTAAATAAAAAAACCGCCAGGAATAATGCATGGCgggat                                                                                                                                 >  1:86984/1‑147 (MQ=255)                      ttaGAACAAATTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGtttt                                                                                                                               <  2:1597/147‑1 (MQ=255)                                    aTCCGCAAGCAGGAGAAGTGATTGAGCAGGGTACGCTGGACCACCTGAGCGGGCAATTGACCGCATTTGGTGAGTTTTGTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGa                                                                                                                 <  2:104114/149‑1 (MQ=255)                                              cGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAg                                                                                                       >  2:347337/1‑149 (MQ=255)                                                 aggaGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGt                                                                                                    <  1:395642/146‑1 (MQ=255)                                                      tgattgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATa                                                                                               >  1:539838/1‑149 (MQ=255)                                                       gattgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATaa                                                                                              >  1:584323/1‑149 (MQ=255)                                                        attgatCAGGGTACGCTGGACCACCTGGCCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATaaa                                                                                             <  2:74910/149‑1 (MQ=255)                                                             tCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTACGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATCAAGAcca                                                                                        >  2:371497/1‑147 (MQ=255)                                                                gggTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGCTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATTGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATACAGCCAATCt                                                                                     >  2:410074/1‑149 (MQ=255)                                                                   tACGCTTGACCACCTGACCGGGCAATTGACCGCATTTGGTGAATTTATTCAGCGAGTTAAGATTTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCa                                                                                  <  1:166584/149‑1 (MQ=255)                                                                    acccTGGACCACCTGACCGGGGAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg                                                                                 <  2:54924/146‑1 (MQ=255)                                                                        tGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAATTTAGTAAGCGTCGATAAAGACAATCAACAGGATa                                                                             >  1:227930/1‑149 (MQ=255)                                                                               ccTGACCGGGCAATTGACGGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGACAGCAAGCATGCATGGCGGGATTTTAACGCGCTATCGATTTTAGTAATAGTCATAAAAGACAATATTCAGGATaaaagaac                                                                      >  2:458041/1‑144 (MQ=255)                                                                                          aaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACgatg                                                           >  2:564312/1‑149 (MQ=255)                                                                                               aCCGCATTTGGTTAGTTTATTAAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTAc                                                      <  1:638810/149‑1 (MQ=255)                                                                                               aCCGCATTTGGTGAGTTTCTTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTAc                                                      <  1:638762/149‑1 (MQ=255)                                                                                                        ggTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCt                                             <  2:539838/149‑1 (MQ=255)                                                                                                         gTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCtt                                            >  1:19781/1‑149 (MQ=255)                                                                                                              tctagtCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATc                                       <  2:64866/144‑1 (MQ=255)                                                                                                               ttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCa                                      <  2:584323/149‑1 (MQ=255)                                                                                                                tATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCTTCTATACAGACTATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCAc                                     <  2:429095/149‑1 (MQ=255)                                                                                                                 aTTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACg                                    <  2:20758/149‑1 (MQ=255)                                                                                                                     aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATAACGCAGa                                >  1:323019/1‑149 (MQ=255)                                                                                                                       cGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGt                                                                                                    >  1:599766/1‑79 (MQ=255)                                                                                                                       cGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGt                                                                                                    <  2:599766/79‑1 (MQ=255)                                                                                                                             aaGATCTCAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGt                        <  1:516910/149‑1 (MQ=255)                                                                                                                                aTCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCACCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTAcc                     >  1:181496/1‑149 (MQ=255)                                                                                                                                     aataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGAttt                >  1:391318/1‑149 (MQ=255)                                                                                                                                           aaaCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcatca          >  2:605126/1‑149 (MQ=255)                                                                                                                                               ccGCCAGCAGTCATGGATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCa      <  1:199714/149‑1 (MQ=255)                                                                                                                                                   cAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAg  <  1:451614/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAG  >  NC_000913_3_pae_tpiA/3895086‑3895380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.