New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2810870 =	34 (0.930)	5 (0.140) +C	5/284	4.4	13.2%	coding (101/531 nt)	mprA	transcriptional repressor of microcin B17 synthesis and multidrug efflux
	?	NC_000913_3_pae_tpiA	2810877 =	32 (0.880)					coding (108/531 nt)	mprA	transcriptional repressor of microcin B17 synthesis and multidrug efflux
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTTGTGCTCTTG  >  NC_000913_3_pae_tpiA/2810723‑2811013                                                                                                                                                     |                                                                                                                                                gTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTtgcatg                                                                                                                                                >  2:76410/1‑149 (MQ=255)    aCTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGcatgcac                                                                                                                                             <  1:76410/149‑1 (MQ=255)    aCTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGcatgcac                                                                                                                                             >  1:404619/1‑149 (MQ=255)      tGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGcatgcacat                                                                                                                                           >  2:580211/1‑149 (MQ=255)       gTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGcatgcacatg                                                                                                                                          <  1:6679/149‑1 (MQ=255)          gTTACTATATCGGCTGAAATTAATGAGGTCAT‑CAAATTTGACATGGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATACACATGCaa                                                                                                                                       >  1:154293/1‑149 (MQ=255)           ttACTATATCGGCTGAAATTAATGAGGTCATACACAACTG‑GATAGTTCGTTTACGTCCATTGAACAAATGCTAAAATTTCGCGCCAGCCTCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCaaa                                                                                                                                      <  1:56065/149‑1 (MQ=255)                            aTTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAAc                                                                                                                     <  1:201790/149‑1 (MQ=255)                             ttAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGga                                                                                                                         <  1:394382/144‑1 (MQ=255)                             ttAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGga                                                                                                                         >  2:394382/1‑144 (MQ=255)                                       taTACTCAAATG‑TATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCATACACGAAGATTTTTCTTATCAGGAGATCCTTCTGATTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAAt                                                                                                          <  1:411473/148‑1 (MQ=255)                                        ctACCCAAATT‑GATAGTTGGTTTACGCCCATTGAATAAATGCTAAAATTTCGCGCCAGCCGCCACTAAGATTTTCCTTATCAGGAGATCCTTCTGACACGTCTTTGCATGCACATGCATAGCAAGCTGCTGGAGAACCGCAATAAAATg                                                                                                         <  2:469610/148‑1 (MQ=255)                                        aTACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATg                                                                                                         >  1:475863/1‑149 (MQ=255)                                             cAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGaa                                                                                                    <  1:356157/149‑1 (MQ=255)                                                      tAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAgg                                                                                            <  2:475863/149‑1 (MQ=255)                                                         ttCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAGTGCTCAGGGGa                                                                                         >  1:41384/1‑149 (MQ=255)                                                              ttACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAAc                                                                                    <  1:130939/149‑1 (MQ=255)                                                                aCGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAATGCTCAGGGGATTAACga                                                                                  <  2:76336/149‑1 (MQ=255)                                                                 cGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACgag                                                                                 >  2:83085/1‑149 (MQ=255)                                                                  gCCCATTGAACAAATGCTAAAATTTCGCGTCAGCCGCCACGAAGAGTTTGCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGGACATGCAAAGCAAGGTGCTGGAGAACCGCAATAAAATGCTGAAGACTCAGGGGATTAACgaga                                                                                >  2:583200/1‑149 (MQ=255)                                                                  gCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACgaga                                                                                <  1:43869/149‑1 (MQ=255)                                                                       ttGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGACGGCTCAAGGGATTAAAGAGACggtg                                                                           >  2:67381/1‑149 (MQ=255)                                                                                  cTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCATTCTTACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGtt                                                                >  1:607979/1‑149 (MQ=255)                                                                                  cTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTGATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATATAACGCTGAAGGCTCAGGGGATCAACGAGACGTTGTTTATGGCGtt                                                                <  1:510536/149‑1 (MQ=255)                                                                                   tAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGAATTAACGAGACGTTGTTTATggagcag                                                               >  2:482839/1‑144 (MQ=255)                                                                                            ccgcCTGCCGTCACTAATATTTTCCTTATCATGTGTTTCTTCTGATTTGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTg                                                      <  1:24068/148‑1 (MQ=255)                                                                                                    cgccACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGTGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCa                                              <  1:580211/149‑1 (MQ=255)                                                                                                                      tttgagaagaTCCTGCGGACTCGTTTTAGCATGAACAGGCAAAGCAAGCTGTTGGAGAACCGCTATAAACTGTCGCTGGCCATGGGGATTAATCAGATGTTGTTCATGGCGTTGATTACGCTGGAGTCTCAGGAAAAACCCAGTATTCa                            <  2:8328/142‑1 (MQ=255)                                                                                                                       aTCAGGAGATTCTTCTGACGCGTCTTTGCATGCACATGCAAAGCAAGCTGGTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGTGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAg                           <  2:89473/149‑1 (MQ=255)                                                                                                                         cAGGAGATCCTCCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGcc                         <  2:633262/149‑1 (MQ=255)                                                                                                                           ggAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCtt                       >  1:127407/1‑149 (MQ=255)                                                                                                                                          ttgTCTTTGCATGGCCAGGCAAAGCAAGGTGCTGGAGAACCGCAATAAAATGCTGAAGGCTTAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTtgtg        <  2:47136/147‑1 (MQ=255)                                                                                                                                          tCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGATGAAGGCTCAGGGGATTAACGCGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGACTTAAGTtgtg        >  1:195604/1‑149 (MQ=255)                                                                                                                                           ttgcTTTGCATGTGCATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACcaca                                   >  2:120256/4‑121 (MQ=255)                                                                                                                                           ttgcTTTGCATGTGCATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACcaca                                   <  1:120256/118‑1 (MQ=255)                                                                                                                                                ttGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAAGGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTTGTGCTCTTg  <  1:116819/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                GTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTTGTGCTCTTG  >  NC_000913_3_pae_tpiA/2810723‑2811013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.