New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2810870 =	34 (0.930)	5 (0.140) +C	5/284	4.4	13.2%	coding (101/531 nt)	mprA	transcriptional repressor of microcin B17 synthesis and multidrug efflux
	?	NC_000913_3_pae_tpiA	2810877 =	32 (0.880)					coding (108/531 nt)	mprA	transcriptional repressor of microcin B17 synthesis and multidrug efflux
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTTGTGCTCTTGGATCATCC  >  NC_000913_3_pae_tpiA/2810729‑2811021                                                                                                                                                      |                                                                                                                                                 gTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGcatgcacatg                                                                                                                                                  <  1:6679/149‑1 (MQ=255)    gTTACTATATCGGCTGAAATTAATGAGGTCAT‑CAAATTTGACATGGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATACACATGCaa                                                                                                                                               >  1:154293/1‑149 (MQ=255)     ttACTATATCGGCTGAAATTAATGAGGTCATACACAACTG‑GATAGTTCGTTTACGTCCATTGAACAAATGCTAAAATTTCGCGCCAGCCTCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCaaa                                                                                                                                              <  1:56065/149‑1 (MQ=255)                      aTTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAAc                                                                                                                             <  1:201790/149‑1 (MQ=255)                       ttAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGga                                                                                                                                 >  2:394382/1‑144 (MQ=255)                       ttAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGga                                                                                                                                 <  1:394382/144‑1 (MQ=255)                                 taTACTCAAATG‑TATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCATACACGAAGATTTTTCTTATCAGGAGATCCTTCTGATTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAAt                                                                                                                  <  1:411473/148‑1 (MQ=255)                                  ctACCCAAATT‑GATAGTTGGTTTACGCCCATTGAATAAATGCTAAAATTTCGCGCCAGCCGCCACTAAGATTTTCCTTATCAGGAGATCCTTCTGACACGTCTTTGCATGCACATGCATAGCAAGCTGCTGGAGAACCGCAATAAAATg                                                                                                                 <  2:469610/148‑1 (MQ=255)                                  aTACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATg                                                                                                                 >  1:475863/1‑149 (MQ=255)                                       cAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGaa                                                                                                            <  1:356157/149‑1 (MQ=255)                                                tAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAgg                                                                                                    <  2:475863/149‑1 (MQ=255)                                                   ttCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAGTGCTCAGGGGa                                                                                                 >  1:41384/1‑149 (MQ=255)                                                        ttACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAAc                                                                                            <  1:130939/149‑1 (MQ=255)                                                          aCGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAATGCTCAGGGGATTAACga                                                                                          <  2:76336/149‑1 (MQ=255)                                                           cGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACgag                                                                                         >  2:83085/1‑149 (MQ=255)                                                            gCCCATTGAACAAATGCTAAAATTTCGCGTCAGCCGCCACGAAGAGTTTGCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGGACATGCAAAGCAAGGTGCTGGAGAACCGCAATAAAATGCTGAAGACTCAGGGGATTAACgaga                                                                                        >  2:583200/1‑149 (MQ=255)                                                            gCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACgaga                                                                                        <  1:43869/149‑1 (MQ=255)                                                                 ttGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGACGGCTCAAGGGATTAAAGAGACggtg                                                                                   >  2:67381/1‑149 (MQ=255)                                                                            cTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCATTCTTACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGtt                                                                        >  1:607979/1‑149 (MQ=255)                                                                            cTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTGATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATATAACGCTGAAGGCTCAGGGGATCAACGAGACGTTGTTTATGGCGtt                                                                        <  1:510536/149‑1 (MQ=255)                                                                             tAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGAATTAACGAGACGTTGTTTATggagcag                                                                       >  2:482839/1‑144 (MQ=255)                                                                                      ccgcCTGCCGTCACTAATATTTTCCTTATCATGTGTTTCTTCTGATTTGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTg                                                              <  1:24068/148‑1 (MQ=255)                                                                                              cgccACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGTGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCa                                                      <  1:580211/149‑1 (MQ=255)                                                                                                                tttgagaagaTCCTGCGGACTCGTTTTAGCATGAACAGGCAAAGCAAGCTGTTGGAGAACCGCTATAAACTGTCGCTGGCCATGGGGATTAATCAGATGTTGTTCATGGCGTTGATTACGCTGGAGTCTCAGGAAAAACCCAGTATTCa                                    <  2:8328/142‑1 (MQ=255)                                                                                                                 aTCAGGAGATTCTTCTGACGCGTCTTTGCATGCACATGCAAAGCAAGCTGGTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGTGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAg                                   <  2:89473/149‑1 (MQ=255)                                                                                                                   cAGGAGATCCTCCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGcc                                 <  2:633262/149‑1 (MQ=255)                                                                                                                     ggAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCtt                               >  1:127407/1‑149 (MQ=255)                                                                                                                                    ttgTCTTTGCATGGCCAGGCAAAGCAAGGTGCTGGAGAACCGCAATAAAATGCTGAAGGCTTAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTtgtg                <  2:47136/147‑1 (MQ=255)                                                                                                                                    tCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGATGAAGGCTCAGGGGATTAACGCGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGACTTAAGTtgtg                >  1:195604/1‑149 (MQ=255)                                                                                                                                     ttgcTTTGCATGTGCATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACcaca                                           >  2:120256/4‑121 (MQ=255)                                                                                                                                     ttgcTTTGCATGTGCATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACcaca                                           <  1:120256/118‑1 (MQ=255)                                                                                                                                          ttGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAAGGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTTGTGCTCTTg          <  1:116819/149‑1 (MQ=255)                                                                                                                                                 cacatgcaAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCGCAGTATTCAGCCTTCTGAAGTAAGTTGTGCTCTTGGatcatc   >  1:318889/1‑149 (MQ=255)                                                                                                                                                  acatgcaAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTGTTGCTCTTGGATCATcc  >  2:203474/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATG‑GATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCCTTCTGACTCGTCTTTGCATGCACATGCAAAGCAAGCTGCTGGAGAACCGCAATAAAATGCTGAAGGCTCAGGGGATTAACGAGACGTTGTTTATGGCGTTGATTACGCTGGAGTCTCAGGAAAACCACAGTATTCAGCCTTCTGAATTAAGTTGTGCTCTTGGATCATCC  >  NC_000913_3_pae_tpiA/2810729‑2811021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.