| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3296999 = | NA (NA) | 7 (0.140) | 7/270 | 5.9 | NA | noncoding (1/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_tpiA | 3297032 = | NA (NA) | noncoding (34/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/3297097‑3296999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACCATCGCCCCTGTCAGCCATAAGGCTTTCGCCGG > NC_000913_3_pae_tpiA/3297032‑3297178 TTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC < 1:4614/99‑1TTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC > 2:4614/1‑99 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAACGATACAAGCCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCC < 1:444287/116‑1 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAACGATACAAGCCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCC > 2:444287/1‑116 CCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATC < 1:36584/129‑1 CCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATC > 2:36584/1‑129 CTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGC > 1:439605/1‑110 CTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGC < 2:439605/110‑1 AAGACGCGGCAAGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCGGCCGACAATCACACCAGCCGCTGCCACAATCGCCCC > 1:592521/1‑149 TCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACCCCAGACACTGCCACCATCGCCCCTGTCAGCCATAGGGCTTTCG > 1:480424/1‑149 GGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAGCACACCAGACACTGCCACCATCGCCCCTGTCAGCCATAAGGCTTTCGCCG < 2:759414/149‑1 GGCCTACAACGATACAAACCGTAGGTCAGAGAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACCCTGCCACCATCGCCCCTGTCAGCCATAAGGCTTTCGCCG < 1:659348/149‑1 GCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACCATCGCCCCTGTCAGCCATAAGGCTTTCGCCGG < 1:471367/149‑1 GCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCAACCACCGCCCCTGTCAGCCATAAGGCTTTCGCCGG > 2:726222/1‑149 TTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/3297097‑3296999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACCATCGCCCCTGTCAGCCATAAGGCTTTCGCCGG > NC_000913_3_pae_tpiA/3297032‑3297178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |