New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3296999 =	NA (NA)	7 (0.140)	7/270	5.9	NA	noncoding (1/84 nt)	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_pae_tpiA	3297032 =	NA (NA)					noncoding (34/84 nt)	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AAGTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCAC  >  NC_000913_3_pae_tpiA/3296851‑3297145                                                                                                                                                     |                                                                                                                                                   aaGTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTAACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATg                                                                                                                                                    <  2:827603/149‑1 (MQ=255)  aGTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGACCCTTGTAATGc                                                                                                                                                   <  2:350448/149‑1 (MQ=255)   gTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                                                                  <  2:902390/149‑1 (MQ=255)       ccaccGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGGAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGAt                                                                                                                                              >  1:618721/1‑149 (MQ=255)       ccaccGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGAt                                                                                                                                              <  1:32626/149‑1 (MQ=255)        caccGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATg                                                                                                                                             >  1:753004/1‑149 (MQ=255)           cGAAAACGGTGAAGTGTTCCGGGTGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGa                                                                                                                                          <  2:365717/149‑1 (MQ=255)           cGAAAACGGGGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGa                                                                                                                                          <  1:12637/149‑1 (MQ=255)             aaaaCGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACg                                                                                                                                        >  2:487088/1‑149 (MQ=255)              aaaCTGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGc                                                                                                                                       <  1:573264/149‑1 (MQ=255)                aCGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCtt                                                                                                                                     >  1:626790/1‑149 (MQ=255)                  ggTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTACTAAATAGCAGCCCCTTGTAATGACTGATAGGACGCTTGc                                                                                                                                   >  1:273721/1‑149 (MQ=255)                    tGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGCCGCTTGCcg                                                                                                                                 >  2:795061/1‑149 (MQ=255)                     gAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCcgc                                                                                                                                <  2:781765/149‑1 (MQ=255)                     gAAGGGTCCCTGATGGGGGTGGTGAGTGAACGTGAAGGGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGGGTGAAGCGGGTAACTCCGGCGTCTACGTTTATTAAATAGCAGACCCTTGGAATGCCTGATGCGACGCTTGCcgc                                                                                                                                <  2:112966/149‑1 (MQ=255)                         tgctCCTGATGGGGCAGGTGACTGAACGAGAAGCGAAAACGGCGGCAGAAATTGCCGGCAGGGGGACCGGCGAAAATGGGGTAACTACGGCGTTTAGGTTAATTAAAGAGGAGCCACTTGAAGAGCCTGATGCGACGCTTGCCTGGTCt                                                                                                                            >  2:455888/4‑149 (MQ=255)                           ttCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAAAGACTGATGTGTCGCGTGCCGCGTCTTa                                                                                                                          >  1:407729/1‑149 (MQ=255)                             ccTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                        <  2:753004/149‑1 (MQ=255)                              cTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                                                                       >  1:848149/1‑149 (MQ=255)                                 aTGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                    <  1:529122/149‑1 (MQ=255)                                 aTGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                    >  1:798117/1‑149 (MQ=255)                                        gggTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                                                                             <  1:330958/148‑1 (MQ=255)                                           tGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAt                                                                                                          <  2:798117/149‑1 (MQ=255)                                           tGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAt                                                                                                          <  2:848149/149‑1 (MQ=255)                                             aCTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCATGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAtcc                                                                                                        >  1:923858/1‑147 (MQ=255)                                                 tactttaaGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                                                                    >  2:719399/7‑149 (MQ=255)                                                    gTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTTCAACGATACAAACCGt                                                                                                 >  1:270060/1‑149 (MQ=255)                                                    gTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGt                                                                                                 >  2:844890/1‑149 (MQ=255)                                                     tGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTa                                                                                                <  2:452512/149‑1 (MQ=255)                                                     tGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTa                                                                                                <  1:852327/149‑1 (MQ=255)                                                     tGAAGCGAAAGCGGCGGAAGATATGGCCAGCCGGGTTAGCGGCGTGAAGCGGGTAACTACTGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCCACGCTTGCCGCGTCTTATCATGCCTACAACGATACAAACCGTa                                                                                                <  1:698479/149‑1 (MQ=39)                                                       aaGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCCTAgg                                                                                              >  2:328282/1‑149 (MQ=255)                                                       aaGCGAAAGCGGCCGCAGATATTGCCAGCCGTGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAgg                                                                                              <  1:746729/149‑1 (MQ=255)                                                         gCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGACGCGGCTGCCTACTGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTc                                                                                            <  1:27225/149‑1 (MQ=39)                                                         gCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAATTAGCAGCCCCTTGTAAGGCCCGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTc                                                                                            <  2:866170/149‑1 (MQ=255)                                                            aaaGCGGCGGCCGATATTGCCAGCCGGGTGGGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGa                                                                                         <  2:313620/149‑1 (MQ=255)                                                                cggcggCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAg                                                                                     <  1:506556/149‑1 (MQ=255)                                                                      gaGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTAAGATAAGGCGttt                                                                               >  2:866657/2‑149 (MQ=255)                                                                      cAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTCTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAg                                                                                               >  2:900312/1‑133 (MQ=255)                                                                      cAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAATCGTAGGTCAGATAAGGCGttt                                                                               >  1:821868/1‑149 (MQ=255)                                                                      cAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAg                                                                                               <  1:900312/133‑1 (MQ=255)                                                                       aGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTAAGATAGGGCGTTTa                                                                              >  1:510230/1‑149 (MQ=255)                                                                        gATATTGCCAGGCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAc                                                                             <  1:395979/149‑1 (MQ=255)                                                                         atatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGAGCCGCTTTACACATCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcg                                                                            >  1:455084/1‑149 (MQ=255)                                                                          tatTTCCAACCGGGTGAGCAGCGGGAAGCAGGTAAATACCGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                                                                           <  1:5279/149‑1 (MQ=38)                                                                          tatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                                                                           <  2:122505/149‑1 (MQ=255)                                                                           atTGCCAGCCGGGTGAGCGGCGTGACGCGGGTAACTACGGCGTTTACGTTTGTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGTCCTACAACGATACAAACCGTAGGTCAGATAAGGCCATTAcgcc                                                                          >  2:287599/1‑149 (MQ=39)                                                                           agtGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                                                                          <  1:745982/147‑1 (MQ=255)                                                                             tGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTAAGTTTAATAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATGCACACCGTAGGTCAGATAAGGCGTTTTccccgc                                                                        >  2:337461/1‑149 (MQ=37)                                                                                      ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACAt                                                               >  1:291387/1‑149 (MQ=255)                                                                                        tGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGt                                                             <  1:530784/149‑1 (MQ=255)                                                                                         gAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGtt                                                            >  2:455233/1‑149 (MQ=255)                                                                                           gcggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATCAGGCGTTTACGCCGCATCCGACATGtttt                                                          <  1:792669/149‑1 (MQ=255)                                                                                             ggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTcc                                                        >  1:493767/1‑149 (MQ=255)                                                                                                    aGCGGGTACCTACGGCGTTTACGTTTATTAAATCGCAGCCCCTTGTAATGCCTGATTCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAt                                                 <  1:599051/149‑1 (MQ=255)                                                                                                        ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACACACCGTAGGTCAGATATGGCGTTTACGCCGCATCCGACATGTCTTCCCTCAAATCAGa                                             >  1:439374/1‑149 (MQ=255)                                                                                                        ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGa                                             <  1:700557/149‑1 (MQ=255)                                                                                                         gTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGTGACGCTTGCCGCGTCTTCTCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaa                                            <  1:863868/149‑1 (MQ=255)                                                                                                         gTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACCAACCGTAGGTCAGAGAAGGCGTTTACACCGCCTCCGACATGTTTTCCCTCAAATCAGaa                                            >  1:708720/1‑149 (MQ=255)                                                                                                         gTAACCACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGGCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaa                                            <  1:457982/149‑1 (MQ=255)                                                                                                            aCTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaacaa                                         <  1:487088/149‑1 (MQ=255)                                                                                                              tACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAacaaca                                       >  1:759414/1‑149 (MQ=255)                                                                                                                cGGCGTTTACGTTTATTAAATAGCAGCACCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATAAGACAAACAgc                                     >  1:324386/1‑149 (MQ=255)                                                                                                                          gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCccgc                           >  1:602780/1‑149 (MQ=255)                                                                                                                                  aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCATCCCGCCGACACTc                   >  2:565658/1‑149 (MQ=255)                                                                                                                                  aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCccgccgcacatc                   >  2:471367/1‑143 (MQ=255)                                                                                                                                  aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAGATCACAACCGTAGGTCAGATACGGCGTTTACGCCGCATCCGCCTTGTTTTCCCTCCAATCAAAACCCCACCCCCGGCCCGGCcacacct                   >  2:733211/1‑146 (MQ=18)                                                                                                                                      gcagcCCTTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAAATAGGCACAAAGCTTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCacac               <  1:455233/149‑1 (MQ=37)                                                                                                                                            ccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGACGACAATCACACCaccca         >  2:659348/1‑145 (MQ=255)                                                                                                                                            ccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTGTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGaca         >  2:587094/1‑149 (MQ=255)                                                                                                                                              ttGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGGACAACAGCGCCAGCCCGCCGACAATCACACCAGACACt       <  2:821868/149‑1 (MQ=255)                                                                                                                                                 tAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGcc    <  2:291387/149‑1 (MQ=255)                                                                                                                                                  aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGcca   <  2:923858/149‑1 (MQ=255)                                                                                                                                                   aTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGccac  >  1:677605/1‑149 (MQ=255)                                                                                                                                                     gCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                                  >  1:4614/1‑99 (MQ=255)                                                                                                                                                     gCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                                  <  2:4614/99‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AAGTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCAC  >  NC_000913_3_pae_tpiA/3296851‑3297145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.