New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3037834	49 (0.920)	8 (0.160)	8/268	5.4	14.3%	coding (273/1734 nt)	recJ	ssDNA exonuclease, 5' ‑‑> 3'‑specific
	?	NC_000913_3_pae_tpiA	= 3037842	50 (1.000)					coding (265/1734 nt)	recJ	ssDNA exonuclease, 5' ‑‑> 3'‑specific
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTG  >  NC_000913_3_pae_tpiA/3037693‑3037978                                                                                                                                              |                                                                                                                                                 gTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACggctctaa                                                                                                                                           >  2:867274/1‑142 (MQ=255)        aCCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTACCGGGCTTAAGCCGCAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCGGCACGCGTAGAGCCGTGCt                                                                                                                                    >  1:823532/1‑149 (MQ=255)           gTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCCTAAGCCTTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCAATATTACTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTggc                                                                                                                                 >  1:31643/1‑148 (MQ=255)            tGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTc                                                                                                                                >  1:107196/1‑149 (MQ=255)                                  ggCATGGGCCTGACCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATGGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCAc                                                                                                          <  2:181048/149‑1 (MQ=255)                                   gCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCAcc                                                                                                         >  1:47946/1‑149 (MQ=255)                                     aTGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGa                                                                                                       >  1:339983/1‑149 (MQ=255)                                      tGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGGCTTCGAAACGGTTTGGTGCCAGGAAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACACTTAGATCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGAc                                                                                                      >  2:601992/1‑149 (MQ=255)                                       gggCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGAcc                                                                                                     >  1:106084/1‑149 (MQ=255)                                          ccTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAATTCACCGACcaca                                                                                                  >  1:434924/1‑149 (MQ=255)                                          ccTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACcaca                                                                                                  >  1:480393/1‑149 (MQ=255)                                          ccTGATCGACCACCTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACcaca                                                                                                  >  2:434587/1‑149 (MQ=255)                                                cGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATc                                                                                            <  1:297286/149‑1 (MQ=255)                                                  aCCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCcg                                                                                          >  1:791945/1‑149 (MQ=255)                                                       ctgcGGGCGTAAGCCGTAAGCGCTGCCGAAGCGGTTTGGTACCAGGGAGTGGATATTGCTGCAACCAAGCGTGCGCACCGCCAGCACGTTTAGAGCCCTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTc                                                                                     <  2:179982/146‑1 (MQ=255)                                                          cGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCtt                                                                                  <  1:253478/149‑1 (MQ=255)                                                           gggCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGAATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTc                                                                                 >  1:417763/1‑149 (MQ=255)                                                            ggCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCGACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTcg                                                                                <  1:888421/149‑1 (MQ=255)                                                             gCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTcgc                                                                               >  2:136944/1‑149 (MQ=255)                                                                           cGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTaa                                                                 >  1:235181/1‑149 (MQ=255)                                                                           cGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTaa                                                                 >  1:126813/1‑149 (MQ=255)                                                                             tCTTCGAAACGGTTTGGTACCAAGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGGGCCGTGCTGGTCGCGCCGTCGGCGCCGACACCCCGTACGACAATAACCCGACTTCCTTCCCCTACCACGTTGTAAAg                                                               >  1:730205/1‑149 (MQ=255)                                                                               ttCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAGGCGTTGTGAAGGa                                                             >  2:351179/1‑149 (MQ=255)                                                                               ttCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGa                                                             >  2:521625/1‑149 (MQ=255)                                                                                tCGAAACTGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATAGTCCGCGCGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGAt                                                            <  1:688218/149‑1 (MQ=255)                                                                                gggagaCGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGAt                                                            <  2:703881/144‑1 (MQ=255)                                                                                 cGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGAtc                                                           <  1:521625/149‑1 (MQ=255)                                                                                   aaaCGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGAtctc                                                         >  2:593992/1‑149 (MQ=255)                                                                                   aaaCGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGAtatc                                                         >  1:526629/1‑149 (MQ=255)                                                                                      cGGTTTGGTACCAGGTAGTCGATATTGCGGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAAc                                                      <  1:778026/149‑1 (MQ=255)                                                                                      cGGTGTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGGCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAAc                                                      <  2:640055/149‑1 (MQ=255)                                                                                       ggTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACg                                                     <  2:47946/149‑1 (MQ=255)                                                                                         tttGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGc                                                   >  2:598622/1‑149 (MQ=255)                                                                                              tACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGGCCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCtttt                                              >  1:886539/1‑149 (MQ=255)                                                                                              tACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGACAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCtttt                                              <  1:645749/149‑1 (MQ=255)                                                                                                  aGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATc                                                                                            <  2:599586/99‑1 (MQ=255)                                                                                                  aGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATc                                                                                            >  1:599586/1‑99 (MQ=255)                                                                                                   cgTAGTCGATATGGGTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGAcg                                         <  2:722983/148‑1 (MQ=255)                                                                                                    tgagccGACATTGCCGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGAcgc                                        <  2:498921/144‑1 (MQ=255)                                                                                                          gATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCa                                  <  1:593992/149‑1 (MQ=255)                                                                                                          gATATGGCGGCAACCAAGCGGGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGTCCACAATACTCCGCGTCCCGTGGCTAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCa                                  <  1:884389/149‑1 (MQ=255)                                                                                                            tatTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGt                                <  2:126813/149‑1 (MQ=255)                                                                                                                    cAACCAAGCGAGCGCATGGCCAGCACGCTCAGAGCCGTGCTGGTCGCGCCGTCGTCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCa                        <  1:806364/149‑1 (MQ=255)                                                                                                                         aaGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtg                              >  2:536132/1‑138 (MQ=255)                                                                                                                         aaGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtg                              <  1:536132/138‑1 (MQ=255)                                                                                                                          agcgagcgCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGGCGTCGGCGGCGAAATCACCGACCACAATAATCCGCGATCCTCCGCGAAAGGCGTGGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcag                  <  2:809782/149‑1 (MQ=255)                                                                                                                          agcgagcgCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCATACGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcag                  >  1:456828/1‑149 (MQ=255)                                                                                                                            cgagcgCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCGGTTGCTGCCAGGgcagca                >  1:602877/1‑149 (MQ=255)                                                                                                                                     cGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTaa       <  1:434587/149‑1 (MQ=255)                                                                                                                                        cAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCGGCGTTCCTTCCCGAAAATCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTACCAGGGCACCCTACCTTAAacac    >  1:367265/1‑149 (MQ=255)                                                                                                                                          gCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTg  <  2:791945/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                 GTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTG  >  NC_000913_3_pae_tpiA/3037693‑3037978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.