| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3676121 = | NA (NA) | 7 (0.140) | 7/270 | 5.9 | NA | noncoding (1/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | 3676146 = | NA (NA) | noncoding (26/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CGTTGCGCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGG > NC_000913_3_pae_tpiA/3675973‑3676265 | cGTTGCGCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTCTATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGGCATCAGTCGTTGTAATAAGAGTACAAAg > 2:391922/1‑149 (MQ=255) gTTGCGCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGc > 1:536407/1‑149 (MQ=255) gcCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGCCCTCAGGCGTTGTAATCAGAGTGAAAAGCCTGAt > 1:199701/1‑149 (MQ=255) gatatCGCAGCCTGGTTGCAGCCTAACTACGGGCTAGGTGCGGGGGGGTTACATCTGGCGGCGATTGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGGCGTTGTAATAAGAGTGAAAAGCCTGATgcgc < 1:735356/148‑1 (MQ=255) tCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACg > 2:248807/1‑149 (MQ=255) tCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACg > 2:831481/1‑149 (MQ=255) gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGACCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACCCTTGTCAGGCCTGAAt > 1:154139/1‑149 (MQ=255) gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCAATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATCAGAGTCAAAAGCCTGATGCACTACGCTTCTCAGGCCTGAAt > 2:627425/1‑149 (MQ=255) ggggTGGGGTTATATCTGGGGGTGGGTGCGGGCTTGACGTTAATCGCCTTGCTGCTGACGCATGGGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGTTGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGaa < 2:431083/147‑1 (MQ=255) gTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTc > 1:386261/1‑149 (MQ=255) gTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCACTGCTGCTGAAACATGAGAAGAGACATGAGTGGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAAttt > 2:576121/1‑148 (MQ=255) tGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTa > 2:509057/1‑149 (MQ=255) tGGCGCCGATGGTGGGTTTGAGGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAACATATTGAATTCGCAAGGATTTGTa < 2:846845/149‑1 (MQ=255) ggcggcGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAg < 1:701132/149‑1 (MQ=255) gtgggtgggTTGCCGTCAATCGTCCTGCTGCTGACCCAGTCGACGAGACACTAGGCGTTGTAATAAGAGGGAAAAGCCTGATGCGCTACGTTTATCAGGCCTTAATTTCCATACAATATATACAATTCGCAAGGTTTTTTAGGCCGTAt < 2:17735/148‑1 (MQ=255) ctggACGTTAACCGCCCTGCGGCTGACCCATGAGACGCGACATCAGTCGTTGTATGAAGAGTGAAAAGCCTGATGCGCGACGTTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt < 2:217022/146‑1 (MQ=38) ctTGACGTTAGTCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTCCTGAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt < 1:688078/149‑1 (MQ=255) cgttaCGTTAAGAGACCTGCCGCGGACCCAAGAGACGAGACATCAGTCGTTGTAATAAGAGCGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt < 2:146634/145‑1 (MQ=37) gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAgg > 2:851718/1‑85 (MQ=255) gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAgg < 1:851718/85‑1 (MQ=255) gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgcc < 2:336226/149‑1 (MQ=255) tcaaTCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgccg < 1:513860/147‑1 (MQ=255) gCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg > 2:132454/1‑149 (MQ=255) cccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 1:815701/1‑149 (MQ=255) cccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCAGCATCCgg > 1:750581/1‑149 (MQ=255) ccTGCTGCTGACCCATGAGACGCGACATCCGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc > 2:456203/1‑149 (MQ=255) ctgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa < 1:829017/149‑1 (MQ=255) aCCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 1:156091/149‑1 (MQ=255) ccATGAGGCGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca < 2:536407/149‑1 (MQ=255) ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGCATTTCCATACAATATATTGAATTCGCAAGGATTTGTAAGCCGGATAAGTAGTTCACACCGCATCCGGCATGAACAAAGca > 1:83401/1‑149 (MQ=37) ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACACTATATTGAATTATCACGGATTTGCTGGCCGCATAATGCGTTCACGCCGCATCCGGCATGAAccgagcg > 1:261397/1‑143 (MQ=37) ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCCAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCCTCCGGCATGAACAAAGca > 2:757232/1‑149 (MQ=255) ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCGTGTCAGGCCTGAATTTCGATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca > 2:757514/1‑149 (MQ=255) cATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGTCATGAACAAAGcac > 1:47731/1‑149 (MQ=255) gaCGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACACAGCACACttt > 2:273953/1‑149 (MQ=255) aCGCGACATCAGGCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACACTATATTGAAGTCGGGAGGATTTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCATGAACAAAGCACACTTTg < 1:27979/149‑1 (MQ=37) cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc > 2:374176/1‑149 (MQ=255) gACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGTATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa < 1:734162/149‑1 (MQ=255) aTCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaacaa < 1:374176/149‑1 (MQ=255) taataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGt < 2:47731/149‑1 (MQ=255) aataaGAGTGGAAAGCCTGAGGCGCGACGCTTATCAGGCCTGAATTTCCATACAATATAGTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGtt < 1:305313/149‑1 (MQ=255) aataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACCATCTATTGACTTCGCAAAGATTTCTCGCCCGGATAAGAAGTTCACGACAACTCCGGCATGAACAACGCAACCTTTGCCAACAATCTCAATATGtt > 1:893160/1‑149 (MQ=25) ataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGttt > 1:558488/1‑149 (MQ=255) gTGAAAAGCCTGCTGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGc < 1:303527/149‑1 (MQ=255) gAAAGGCTTGATGCGGTACGCTTATCAGGCCTGAATTTCCATACAATATATGGAATGCGCAAGGATGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTTCCAACAATCTAAATCTGTTTAATTGCCg < 2:643342/149‑1 (MQ=25) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGCTTTGTAGGACGGATAGGGCGTTCAAGACGCCTAAGGCATAACTAAACTAGACCTTGCCAACAATCGTAATCTTTTTAATTGCCgg > 2:82303/1‑149 (MQ=21) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACACTCTAAAACTGTTTAATTTCCgg > 2:394410/1‑149 (MQ=255) | CGTTGCGCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGG > NC_000913_3_pae_tpiA/3675973‑3676265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |