New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3676121 =	NA (NA)	7 (0.140)	7/270	5.9	NA	noncoding (1/161 nt)	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913_3_pae_tpiA	3676146 =	NA (NA)					noncoding (26/161 nt)	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

GACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACT  >  NC_000913_3_pae_tpiA/3676003‑3676294                                                                                                                                                |                                                                                                                                                     gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGACCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACCCTTGTCAGGCCTGAAt                                                                                                                                                 >  1:154139/1‑149 (MQ=255) gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCAATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATCAGAGTCAAAAGCCTGATGCACTACGCTTCTCAGGCCTGAAt                                                                                                                                                 >  2:627425/1‑149 (MQ=255)                    ggggTGGGGTTATATCTGGGGGTGGGTGCGGGCTTGACGTTAATCGCCTTGCTGCTGACGCATGGGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGTTGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGaa                                                                                                                              <  2:431083/147‑1 (MQ=255)                       gTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTc                                                                                                                           >  1:386261/1‑149 (MQ=255)                       gTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCACTGCTGCTGAAACATGAGAAGAGACATGAGTGGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAAttt                                                                                                                           >  2:576121/1‑148 (MQ=255)                                    tGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTa                                                                                                              >  2:509057/1‑149 (MQ=255)                                    tGGCGCCGATGGTGGGTTTGAGGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAACATATTGAATTCGCAAGGATTTGTa                                                                                                              <  2:846845/149‑1 (MQ=255)                                     ggcggcGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAg                                                                                                             <  1:701132/149‑1 (MQ=255)                                            gtgggtgggTTGCCGTCAATCGTCCTGCTGCTGACCCAGTCGACGAGACACTAGGCGTTGTAATAAGAGGGAAAAGCCTGATGCGCTACGTTTATCAGGCCTTAATTTCCATACAATATATACAATTCGCAAGGTTTTTTAGGCCGTAt                                                                                                      <  2:17735/148‑1 (MQ=255)                                                    ctggACGTTAACCGCCCTGCGGCTGACCCATGAGACGCGACATCAGTCGTTGTATGAAGAGTGAAAAGCCTGATGCGCGACGTTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt                                                                                              <  2:217022/146‑1 (MQ=38)                                                    ctTGACGTTAGTCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTCCTGAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt                                                                                              <  1:688078/149‑1 (MQ=255)                                                    cgttaCGTTAAGAGACCTGCCGCGGACCCAAGAGACGAGACATCAGTCGTTGTAATAAGAGCGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt                                                                                              <  2:146634/145‑1 (MQ=37)                                                          gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                                        <  2:336226/149‑1 (MQ=255)                                                           tcaaTCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgccg                                                                                       <  1:513860/147‑1 (MQ=255)                                                                 gCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                                                 >  2:132454/1‑149 (MQ=255)                                                                  cccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                                >  1:815701/1‑149 (MQ=255)                                                                  cccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCAGCATCCgg                                                                                >  1:750581/1‑149 (MQ=255)                                                                   ccTGCTGCTGACCCATGAGACGCGACATCCGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                               >  2:456203/1‑149 (MQ=255)                                                                          ctgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa                                                                        <  1:829017/149‑1 (MQ=255)                                                                             aCCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg                                                                     <  1:156091/149‑1 (MQ=255)                                                                               ccATGAGGCGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca                                                                   <  2:536407/149‑1 (MQ=255)                                                                               ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGCATTTCCATACAATATATTGAATTCGCAAGGATTTGTAAGCCGGATAAGTAGTTCACACCGCATCCGGCATGAACAAAGca                                                                   >  1:83401/1‑149 (MQ=37)                                                                               ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACACTATATTGAATTATCACGGATTTGCTGGCCGCATAATGCGTTCACGCCGCATCCGGCATGAAccgagcg                                                                   >  1:261397/1‑143 (MQ=37)                                                                               ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCCAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCCTCCGGCATGAACAAAGca                                                                   >  2:757232/1‑149 (MQ=255)                                                                               ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCGTGTCAGGCCTGAATTTCGATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca                                                                   >  2:757514/1‑149 (MQ=255)                                                                                cATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGTCATGAACAAAGcac                                                                  >  1:47731/1‑149 (MQ=255)                                                                                     gaCGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACACAGCACACttt                                                             >  2:273953/1‑149 (MQ=255)                                                                                      aCGCGACATCAGGCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACACTATATTGAAGTCGGGAGGATTTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCATGAACAAAGCACACTTTg                                                            <  1:27979/149‑1 (MQ=37)                                                                                       cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc                                                           >  2:374176/1‑149 (MQ=255)                                                                                          gACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGTATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa                                                        <  1:734162/149‑1 (MQ=255)                                                                                             aTCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaacaa                                                     <  1:374176/149‑1 (MQ=255)                                                                                                        taataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGt                                          <  2:47731/149‑1 (MQ=255)                                                                                                         aataaGAGTGGAAAGCCTGAGGCGCGACGCTTATCAGGCCTGAATTTCCATACAATATAGTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGtt                                         <  1:305313/149‑1 (MQ=255)                                                                                                         aataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACCATCTATTGACTTCGCAAAGATTTCTCGCCCGGATAAGAAGTTCACGACAACTCCGGCATGAACAACGCAACCTTTGCCAACAATCTCAATATGtt                                         >  1:893160/1‑149 (MQ=25)                                                                                                          ataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGttt                                        >  1:558488/1‑149 (MQ=255)                                                                                                                gTGAAAAGCCTGCTGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGc                                  <  1:303527/149‑1 (MQ=255)                                                                                                                  gAAAGGCTTGATGCGGTACGCTTATCAGGCCTGAATTTCCATACAATATATGGAATGCGCAAGGATGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTTCCAACAATCTAAATCTGTTTAATTGCCg                                <  2:643342/149‑1 (MQ=25)                                                                                                                   aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGCTTTGTAGGACGGATAGGGCGTTCAAGACGCCTAAGGCATAACTAAACTAGACCTTGCCAACAATCGTAATCTTTTTAATTGCCgg                               >  2:82303/1‑149 (MQ=21)                                                                                                                   aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACACTCTAAAACTGTTTAATTTCCgg                               >  2:394410/1‑149 (MQ=255)                                                                                                                         cTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa                         <  1:801097/149‑1 (MQ=255)                                                                                                                                gcTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATcc                  >  2:830170/1‑149 (MQ=255)                                                                                                                                     gcgcaTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCaa             <  2:509990/145‑1 (MQ=255)                                                                                                                                     gCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCaa             <  1:132454/149‑1 (MQ=255)                                                                                                                                          tCAGGCCTGAAGTTCCATACAATATTATGAATGCGAAAGGATTTGTAGGCCGGATAAGGCGTGCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGCCATCCGGCAATTatc        <  2:754828/149‑1 (MQ=37)                                                                                                                                               ccTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAAGCTAAAGCTGTGTAATTGCCGGATGTCAGACATCCGGCAATTAGCATCAc   >  1:896786/1‑149 (MQ=255)                                                                                                                                                cTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct  >  1:481723/1‑149 (MQ=255)                                                                                                                                                cTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATAAct  >  1:885456/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     GACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACT  >  NC_000913_3_pae_tpiA/3676003‑3676294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.