BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4153262 =	NA (NA)	5 (0.050) +GTGACTCAAACGATGCCCAACCGTAG	5/228	14.7	4.2%	intergenic (‑248/+350)	ppc/argE	phosphoenolpyruvate carboxylase/acetylornithine deacetylase
*	?	NC_000913_3_pae_tpiA	= 4450893	139 (1.180)	5 (0.050) +GTGACTCAAACGATGCCCAACCGTAG	5/228	14.7	4.2%	noncoding (34/85 nt)	REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 144 total aligned reads displayed.

AAGCCACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGTCGGATAAGATGCGCAAGTA  >  NC_000913_3_pae_tpiA/4153114‑4153410

aaGCCACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGgt                                                                                                                                                      <  2:751936/149‑1 (MQ=255)

 aGCCACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGgtg                                                                                                                                                     <  1:1851152/149‑1 (MQ=255)

 aGCCACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGgtg                                                                                                                                                     >  2:257288/1‑149 (MQ=255)

  gCCACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGgtga                                                                                                                                                    >  2:1989590/1‑148 (MQ=255)

   ccACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAACTAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTa                                                                                                                                                   >  2:927314/1‑149 (MQ=255)

   ccACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTCACACCAAAGGTGTa                                                                                                                                                   >  2:928590/1‑149 (MQ=255)

   ccACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTa                                                                                                                                                   <  2:71473/149‑1 (MQ=255)

   ccACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTa                                                                                                                                                   >  2:1461442/1‑149 (MQ=255)

    cACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTGATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACAAAAGGTGTAg                                                                                                                                                  >  1:1705227/1‑149 (MQ=255)

       gTACAAGGGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTc                                                                                                                                               <  2:1570087/149‑1 (MQ=255)

        tAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCGAAGTAACACCAAAGGTGTAGGTCg                                                                                                                                              >  1:1620637/1‑149 (MQ=255)

        tAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCg                                                                                                                                              >  2:1428710/1‑149 (MQ=255)

           aaGCGGTTACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGAt                                                                                                                                           <  2:839063/149‑1 (MQ=255)

           aaGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGAt                                                                                                                                           >  1:521719/1‑149 (MQ=255)

             gCGGTGACGTCAAATGCTGCGAAATGGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATaa                                                                                                                                         <  2:1623763/149‑1 (MQ=255)

             gCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATaa                                                                                                                                         <  1:698772/149‑1 (MQ=255)

               ggTGACGTCAAAGTGTGCGAAACCGCTTAAGCAAACGAAAAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGa                                                                                                                                       <  2:813161/149‑1 (MQ=255)

                 tGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCTCAAGTACCACCAAAGGTGTAGGTCGGATAAGATg                                                                                                                                     >  1:1840463/1‑149 (MQ=255)

                  gACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATgc                                                                                                                                    <  2:521719/149‑1 (MQ=255)

                      tCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCaa                                                                                                                                <  2:1738640/149‑1 (MQ=255)

                        aaaTGCTGCGAACTCGCTACAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGCTGCGCAAGt                                                                                                                              >  2:1299201/1‑149 (MQ=255)

                        aaaTGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCCAGTAACACCAAAGGTGTAGCTCGGATAAGATGCGCACGt                                                                                                                              >  2:1248324/1‑149 (MQ=255)

                          aTGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTAt                                                                                                                            >  2:593292/1‑149 (MQ=255)

                           tgctgcGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATc                                                                                                                           <  1:1527375/149‑1 (MQ=255)

                            gctgcGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCg                                                                                                                          <  1:646767/149‑1 (MQ=255)

                            gctgcGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCg                                                                                                                          >  1:996707/1‑149 (MQ=255)

                              tgcGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCa                                                                                                                        >  2:475146/1‑149 (MQ=255)

                               gcGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCAt                                                                                                                       <  1:475146/149‑1 (MQ=255)

                                cGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAGGTATCTCATc                                                                                                                      <  2:21299/149‑1 (MQ=255)

                                cGAAATCGCTTCAGAAAACGAATAAATAGCATGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATc                                                                                                                      <  1:1248324/149‑1 (MQ=255)

                                cGAAATCCCATCAGCAAACGAATAAATAGCAGGCATTTACGGCATTAAATTCACGACGCTTTAAAGAAGCGTAACGTACGGAAATGTTAAAAAACAGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATc                                                                                                                      <  1:741510/149‑1 (MQ=255)

                                 gAAATCGCTTCAGCAAACGAATAAATAGCAGTAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATcc                                                                                                                     <  1:1475608/149‑1 (MQ=255)

                                 gAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATcc                                                                                                                     <  1:1824831/149‑1 (MQ=255)

                                   atccGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGa                                                                                                                   <  1:1442123/146‑1 (MQ=255)

                                        cTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAACTAACACCAAAGGTGTAGGTTGGATAAGATGCGCAAGTATCGCATCCGCCaata                                                                                                              >  2:1048694/1‑149 (MQ=255)

                                            aGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGc                                                                                                          <  1:1279634/149‑1 (MQ=255)

                                             gCAAACGAATAAATAGCACGAATTTACGTCATTAAATACACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCg                                                                                                         <  1:1670584/149‑1 (MQ=255)

                                              taaaCGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCgg                                                                                                        <  1:2025913/148‑1 (MQ=255)

                                               aaaCGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGc                                                                                                       >  2:1219153/1‑149 (MQ=255)

                                               aaaCGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGc                                                                                                       >  2:1033515/1‑149 (MQ=255)

                                               aaaCGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGc                                                                                                       >  2:1605295/1‑149 (MQ=255)

                                               aaaCGAATAAATAGCAGGAAATTACGGCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGc                                                                                                       <  1:1411935/149‑1 (MQ=255)

                                                aaCGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCa                                                                                                      >  2:1006122/1‑149 (MQ=255)

                                                   gAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGTTAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTg                                                                                                   >  1:900048/1‑149 (MQ=255)

                                                   gAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTg                                                                                                   >  1:1448367/1‑149 (MQ=255)

                                                   gAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTg                                                                                                   >  1:2038933/1‑149 (MQ=255)

                                                    aataaataGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATAGCGGCACTgg                                                                                                  >  1:5458/1‑149 (MQ=255)

                                                     attcataGCAGGAATTTACGTCAATAAATTCACGGCGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGa                                                                                                 <  1:1006154/145‑1 (MQ=255)

                                                       aaataGCAGCAATTTACGTCATTAATTCCACGACGCTTAAAATAAGAGCAACATATGGAAATGATCAAGTGGCGCCCCAAAAAAAACCGGAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGt                                                                                               <  1:2049769/149‑1 (MQ=18)

                                                        aataGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCCTCCGACATTATTGCGGCACTGGAGtt                                                                                              <  2:1075471/149‑1 (MQ=255)

                                                        aataGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGtt                                                                                              <  2:1772313/149‑1 (MQ=255)

                                                           aGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTgg                                                                                           <  1:1983360/149‑1 (MQ=255)

                                                            gCAGTAATTTACGTCATTAAATTCACGCCGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGc                                                                                          <  2:1432942/149‑1 (MQ=255)

                                                               ggAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGAAGTTTGGCAAc                                                                                       >  2:271679/1‑149 (MQ=255)

                                                                 aagtgaCGTCATTTAATTACAGACGCTTTAAATAAGAGTAACTTATGGAAATGGTAAAAAATCGGCACAAGGAATTATGAGGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAg                                                                                     <  2:1793770/144‑1 (MQ=18)

                                                                 aaTTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAg                                                                                     <  2:1538298/149‑1 (MQ=255)

                                                                        gTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCaa                                                                                                                                >  1:856273/1‑99 (MQ=255)

                                                                        gTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGa                                                                              >  1:686366/1‑149 (MQ=255)

                                                                                 ttCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGGGGcgcg                                                                     >  1:1890314/1‑149 (MQ=255)

                                                                                      gacgCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAgcgc                                                                <  2:1511223/149‑1 (MQ=255)

                                                                                       acgCTTTAAATAAGCGGAATTTATGGAAATGTTAAAAAATCGCCCCAAGAAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCAGCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGcc                                                               <  2:1214017/149‑1 (MQ=255)

                                                                                        cgCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGGCATTATTGCGGCACTGAAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCt                                                              >  1:122496/1‑149 (MQ=255)

                                                                                               aaTAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCgg                                                       <  1:1563594/149‑1 (MQ=255)

                                                                                                aTAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGc                                                      <  2:2038933/149‑1 (MQ=255)

                                                                                                aTAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGc                                                      <  2:1854399/149‑1 (MQ=255)

                                                                                                aTAACCCTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGTCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGc                                                      <  1:905212/149‑1 (MQ=255)

                                                                                                          cTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTgg                                            <  1:1878324/149‑1 (MQ=255)

                                                                                                          cTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTgg                                            >  1:1450594/1‑149 (MQ=255)

                                                                                                          cTTAGGGAAATGTTAAAAAATCGCCCTAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTgg                                            <  2:378424/149‑1 (MQ=255)

                                                                                                               ggAAATGTTAAAAACTCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc                                       <  1:1241275/149‑1 (MQ=255)

                                                                                                               ggAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCAtg                                       >  1:458215/1‑148 (MQ=255)

                                                                                                                gAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACCTTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGGTGGGCATCg                                      >  1:1010348/1‑149 (MQ=255)

                                                                                                                gAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTGGGCAACAGTGCCGGATGCGGCGCGGGCGCCTTATCCGGCCTACAGTTCGGCaaca                                      >  2:1670673/1‑146 (MQ=255)

                                                                                                                  aaTGTTAAAAAATCGGGCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTAGCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGGGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGtt                                    <  2:1830651/149‑1 (MQ=255)

                                                                                                                  aaTGTTAAAAAATCGCCCCAAGTAACAGCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGtt                                    <  1:1164651/149‑1 (MQ=255)

                                                                                                                  aaTGTGAAAAACTCGCCCTAGGTAACTCTAAGGGTGTAGGTCGGATAGGATGCGCAGGTTTCGTATTCGACATTATTGCGGCACTGGAGTTTGGTAACAGTGCCGGATGCGTCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGtt                                    <  2:674870/149‑1 (MQ=14)

                                                                                                                   acgTTAAAAAACCGCCCCAGGTAACACCAAAGGGGTAGGTCGGCGAAGGGTCGCAAGTATCGCATCCGTCATTATTGCGGCACGGGAGGTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGttt                                   <  1:1150157/147‑1 (MQ=17)

                                                                                                                   aTGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGttt                                   <  2:1957827/149‑1 (MQ=255)

                                                                                                                   aTGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGttt                                   <  1:218204/149‑1 (MQ=255)

                                                                                                                     ggtAAAAAGGCGGCCCAGGTTAGACCTGAGGTGTAGGTCGGATAAGATGCGCAAGTTTCGCATCCGACATTATTGCGGGACTGGTGGGTGGCGGCGGTGCCGGATGCGGCGCGTGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGa                                 <  2:870769/147‑1 (MQ=11)

                                                                                                                     gTTCAAAAATCGCCCCCATTTACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGAAATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGa                                 <  1:1022769/149‑1 (MQ=17)

                                                                                                                     gTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGa                                 <  1:1709013/149‑1 (MQ=255)

                                                                                                                     gTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGa                                 <  2:139515/149‑1 (MQ=255)

                                                                                                                      ttAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg                                <  1:893059/149‑1 (MQ=255)

                                                                                                                      ttAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg                                >  1:825327/1‑149 (MQ=255)

                                                                                                                             atctgcccAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgt                         <  1:1221623/144‑1 (MQ=255)

                                                                                                                                 ccccAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTgtcggc                     >  2:1076882/1‑148 (MQ=255)

                                                                                                                                  cccAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGttt                                   >  2:896409/1‑134 (MQ=255)

                                                                                                                                  cccAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtc                        >  1:471303/1‑145 (MQ=255)

                                                                                                                                  cccAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtc                        <  2:471303/145‑1 (MQ=255)

                                                                                                                                    cAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGAAAGTATCGCATCCGAAATAATTTCGGCGCTGGAGGTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCACCGTCTGAATCACTgtcggtcgc                  >  2:240411/1‑148 (MQ=14)

                                                                                                                                      ccgatctccAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTATTAAAGGTCTTCGTTTGAGTCACTGTCGGTCGGAt                <  1:1553281/142‑1 (MQ=14)

                                                                                                                                       ggaacaacAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGTCGGATa               <  2:2038226/147‑1 (MQ=255)

                                                                                                                                       gTAACACCAAAGGTGTAGGGCGGATAAGATGCGAAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGTCGGATa               <  2:1007618/149‑1 (MQ=255)

                                                                                                                                            acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTCTGAGTCACTGTCGGTCGGATAAGATg          >  1:277524/1‑149 (MQ=255)

                                                                                                                                              cAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTgtag                       >  1:1396292/1‑132 (MQ=18)

                                                                                                                                              cAAAGGTGTAGGGCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGTCGGATAAGAtcgg        >  2:1553281/1‑146 (MQ=255)

                                                                                                                                                 aGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGTCGGATAAGATGCGCaa     <  2:1450594/149‑1 (MQ=40)

                                                                                                                                                 aGGGGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGTCGGATAAGATGCGCaa     <  1:2007193/149‑1 (MQ=255)

                                                                                                                                                    tgtAGGTCGGATACGATACGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGACTCTCTGTCGTTCGGATAAGATGCGTAAGTa  <  1:2023956/149‑1 (MQ=14)

AAGCCACGTAAAAGCGGTGACGTCAAATGCTGCGAAATCGCTTCAGCAAACGAATAAATAGCAGGAATTTACGTCATTAAATTCACGACGCTTTAAATAAGCGTAACTTATGGAAATGTTAAAAAATCGCCCCAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGTCGGATAAGATGCGCAAGTA  >  NC_000913_3_pae_tpiA/4153114‑4153410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.