BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4153262 =	NA (NA)	5 (0.050) +GTGACTCAAACGATGCCCAACCGTAG	5/228	14.7	4.2%	intergenic (‑248/+350)	ppc/argE	phosphoenolpyruvate carboxylase/acetylornithine deacetylase
*	?	NC_000913_3_pae_tpiA	= 4450893	139 (1.180)	5 (0.050) +GTGACTCAAACGATGCCCAACCGTAG	5/228	14.7	4.2%	noncoding (34/85 nt)	REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 141 total aligned reads displayed.

CCTGAAAAGCTGACGTTAACCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTC  >  NC_000913_3_pae_tpiA/4450745‑4451039

ccTGAAAAGCTGACGTTAACCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGc                                                                                                                                                    >  1:2029996/1‑149 (MQ=255)

 cTGAAAAGCTGACGTTAACCAAATCCACCCTTTACCTGCCTGATACCGCACAAGAAGAATTAGAGAAGAAGACAAATATGGGCTATTGAGGCTTGCCATAAAGGGGGAGGATTCGTAGGCCGGATCGTGAGGTCGCGCCACATCCAGcc                                                                                                                                                   >  1:1329617/1‑148 (MQ=255)

   gAAAAGCTGACTTTAACCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGCAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTGGGCCTGGTAAGGAGATGGCGCCGCGTCCGGCggt                                                                                                                                                 >  2:892172/1‑147 (MQ=255)

    aaaaGCTGACGTTAACCAAATCCCCCCTTTACCTGCCTGATACCGCAAAAGAATAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATg                                                                                                                                                <  1:1409214/149‑1 (MQ=255)

    aaaaGCTGACGTTAACCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGAt                                                                                                                                                 >  1:1755449/1‑148 (MQ=255)

    aaaaGCTGACGTTAACCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGAt                                                                                                                                                 <  2:1755449/148‑1 (MQ=255)

    aaaaGCCCACGTTAACCAAATCCACCCTTTACCCGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATg                                                                                                                                                <  2:630627/149‑1 (MQ=255)

         cTGACGTTAACCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCa                                                                                                                                           <  1:1342627/149‑1 (MQ=255)

          tGACGTTAACCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATGAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCAc                                                                                                                                          <  1:881892/149‑1 (MQ=255)

           gtcGTTAACCAAATCCACCCTTTACCTGCCTGACACTGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTGGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACt                                                                                                                                         <  1:573936/147‑1 (MQ=255)

                 aaCCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGcc                                                                                                                                   <  2:259518/149‑1 (MQ=255)

                   ccAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGTGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCt                                                                                                                                  <  1:33223/148‑1 (MQ=255)

                   ccAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATTCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGaa                                                                                                                                      <  1:1348251/144‑1 (MQ=255)

                   ccAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGa                                                                                                                                                  >  1:523101/1‑132 (MQ=255)

                   ccAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGa                                                                                                                                                  <  2:523101/132‑1 (MQ=255)

                   ccAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCt                                                                                                                                  >  2:33223/1‑148 (MQ=255)

                   ccAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTg                                                                                                                                 >  2:1725078/1‑149 (MQ=255)

                   ccAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTg                                                                                                                                 >  2:803704/1‑149 (MQ=255)

                        tCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTGTGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCg                                                                                                                            >  1:707778/1‑149 (MQ=255)

                        tCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCg                                                                                                                            <  1:1775158/149‑1 (MQ=255)

                          cACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGGGGGTTGCTATGCCTGATGCCGAGTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc                                                                                                                          <  1:1853858/149‑1 (MQ=255)

                           aCCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGCAAAATATGGGGTATTGAGGGTTGCTATGCCTGAGGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAGGCGACg                                                                                                                         >  1:1251228/1‑149 (MQ=255)

                           aCCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg                                                                                                                         <  1:79258/149‑1 (MQ=255)

                                 tACCTGCCTGATACCGCAAAAGCAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAcc                                                                                                                   <  1:373567/149‑1 (MQ=255)

                                     tgcctgATACCGCAAAAGAAGAATTAGAAAAGAAGAAAAATATGGGGGATTGCGGGGTGCTATGCCTGATTCCGATTCGCAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGt                                                                                                               <  1:1023764/149‑1 (MQ=38)

                                      gcctgATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATCTGGGGAATTGCGGGTTGCTATTCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCCACGCTTACCGCGTc                                                                                                              >  2:1493263/1‑149 (MQ=39)

                                      gcctgATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTc                                                                                                              >  2:2016302/1‑149 (MQ=255)

                                        ctgATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCtt                                                                                                            >  2:703308/1‑149 (MQ=255)

                                           aTACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc                                                                                                         >  2:1184011/1‑149 (MQ=255)

                                              ccGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg                                                                                                      >  1:70433/1‑149 (MQ=255)

                                               cGCAAAAGAAGAATTAGAGAAGAAGAGAAATATGGGGTATTGAGGGTTGCTATGGCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCCTCTTATccagc                                                                                                     >  2:2072944/1‑145 (MQ=255)

                                               cGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTc                                                                                                              >  1:1520759/1‑140 (MQ=255)

                                               cGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc                                                                                                     >  2:1248964/1‑149 (MQ=255)

                                                gCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAAGCTTAACGCGTCTTATATTGcc                                                                                                    >  2:1963095/1‑149 (MQ=255)

                                                   aaaGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAc                                                                                                 <  2:1680785/149‑1 (MQ=255)

                                                      gaagaaGTAGAGAAGAAGAAAAATATGGGGTATTAAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATAATGCCGACttg                                                                                              <  2:1406988/149‑3 (MQ=39)

                                                          aaTTAGAGCAGAAGAAAAATATGGGGTCTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGTATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTTAGCCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGTGc                                                                                          >  1:176926/1‑149 (MQ=38)

                                                          aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc                                                                                          >  1:1600981/1‑149 (MQ=255)

                                                           aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc                                                                                                                                            >  2:1088959/1‑98 (MQ=255)

                                                           aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc                                                                                                                                            <  1:1088959/98‑1 (MQ=255)

                                                           aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa                                                                                         >  2:108101/1‑149 (MQ=255)

                                                               gagaAGAAGAAAAAGATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCGGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCt                                                                                     <  2:1246773/149‑1 (MQ=255)

                                                                agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCtt                                                                                    <  2:1287460/149‑1 (MQ=255)

                                                                 gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt                                                                                   >  1:37749/1‑149 (MQ=255)

                                                                  aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTa                                                                                  <  1:803704/149‑1 (MQ=255)

                                                                  aagaagaaAAATATGGGGTAGTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTa                                                                                  <  2:1055310/149‑1 (MQ=255)

                                                                    gaagcgaaaTAGGGGGTAGTGTGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTaca                                                                                <  2:848777/143‑1 (MQ=38)

                                                                       gaaAAATATGGGGTGTTAAGGGTTGCTATGCCTGATGCCTCTTCGGGTGTCGGGGAAGGCGTGTGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCCCGTCTTATCATGCCTACTGGGAGCCCGCTTTACACCg                                                                             >  2:1549760/1‑149 (MQ=255)

                                                                       gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg                                                                             >  2:1596967/1‑149 (MQ=255)

                                                                       gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCAGATTCGTAGGCCGGATAAGGCGCTCGCGACGCATCCGGCGATGGTGCACTGCAGCCTGATGCGACGCTTGCCGCGTCTTATCATGCCTACTGGGGGCGCGCTTTACACCg                                                                             >  2:1094730/1‑149 (MQ=38)

                                                                        aaaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgg                                                                            >  1:375144/1‑149 (MQ=255)

                                                                         aaaaTATTGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCggg                                                                           <  2:399658/149‑1 (MQ=255)

                                                                           aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCggggg                                                                         <  1:1563146/149‑1 (MQ=255)

                                                                             tatGGGGTAGTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGaa                                                                       >  2:1758227/1‑149 (MQ=255)

                                                                                 gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCa                                                                   <  2:1346562/149‑1 (MQ=255)

                                                                                  ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAt                                                                  <  2:1563955/149‑1 (MQ=255)

                                                                                   gTATTGAGGGTTGCTATGCCTGATGCTGATTCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGTGACGTGTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATg                                                                 <  2:239804/149‑1 (MQ=39)

                                                                                   gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa                                                                                                        <  1:1023660/110‑1 (MQ=255)

                                                                                   gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa                                                                                                        >  2:1023660/1‑110 (MQ=255)

                                                                                    tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATga                                                                <  1:639075/149‑1 (MQ=255)

                                                                                       tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgacga                                                             <  2:1150222/149‑1 (MQ=255)

                                                                                       tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgacga                                                             <  2:1806910/149‑1 (MQ=255)

                                                                                        gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgacgac                                                            >  1:1030538/1‑149 (MQ=255)

                                                                                            gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGAcgaccgac                                                        <  1:1725078/149‑1 (MQ=255)

                                                                                                    gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGCTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACCCTTTACACCGGGGGAAACCATGACGACCGACCAACACCa                                                >  2:515666/1‑149 (MQ=255)

                                                                                                     ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTTCAGTGAAGCCTGATGCGCCGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACTGAGGGCAGCCATGACGACCTACCAACGCCAg                                               >  2:1911280/1‑149 (MQ=37)

                                                                                                     ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt                                                                                                       >  2:786807/1‑93 (MQ=255)

                                                                                                     ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt                                                                                                       <  1:786807/93‑1 (MQ=255)

                                                                                                      cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCtt                                                                                    <  1:1531931/111‑1 (MQ=255)

                                                                                                      cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCtt                                                                                    >  2:1531931/1‑111 (MQ=255)

                                                                                                      cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAgg                                              >  1:1052636/1‑149 (MQ=255)

                                                                                                         acgCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGgaga                                           <  1:259085/147‑1 (MQ=255)

                                                                                                            ccGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa                                                                                         <  1:1728127/100‑1 (MQ=255)

                                                                                                            ccGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa                                                                                         >  2:1728127/1‑100 (MQ=255)

                                                                                                              gATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGGtcctc                                      >  1:528547/1‑149 (MQ=255)

                                                                                                                    tAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa                                                                                                  >  1:844304/1‑83 (MQ=255)

                                                                                                                      ggCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg                                                                          >  1:397542/1‑105 (MQ=255)

                                                                                                                      ggCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg                                                                          <  2:397542/105‑1 (MQ=255)

                                                                                                                      ggCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGa                              >  1:40522/1‑149 (MQ=255)

                                                                                                                      ggCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGa                              >  2:203767/1‑149 (MQ=255)

                                                                                                                       gCCGGATGCGGCGCGAGCGCCTTATCCGGCGCTGGTGCCCTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACCCCGGGAGATCCTCCGCACCgca                             >  1:1066381/1‑147 (MQ=255)

                                                                                                                       gCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCGTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGaa                             >  2:260443/1‑149 (MQ=255)

                                                                                                                       gCCGGAGAAGCGGCTGGCGCCGCATGCGGCGATGGTGCACTGAAGCCTGATGCGACGCTGACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGaa                             <  2:1471095/149‑1 (MQ=38)

                                                                                                                         cGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACCCCAGGAGATCCTCCGCACAGAAgg                           >  1:32789/1‑149 (MQ=255)

                                                                                                                           gATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATga                                                                <  1:1462742/110‑1 (MQ=255)

                                                                                                                           gATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATga                                                                >  2:1462742/1‑110 (MQ=255)

                                                                                                                            aTAAGGCGCTGGCGGCGCATCCGGCGAGGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAAAACCAGGAGATCCTCCGCACCGAAGGAtt                        <  2:1780921/149‑1 (MQ=255)

                                                                                                                            aTAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGAtt                        <  1:1510543/149‑1 (MQ=255)

                                                                                                                                ggCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGCGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCCCCGACGGAtgaggt                    >  1:675390/1‑144 (MQ=255)

                                                                                                                                  cgcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTATACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTaa                  <  2:1380678/149‑1 (MQ=255)

                                                                                                                                   gcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTaaa                 <  1:2016302/149‑1 (MQ=255)

                                                                                                                                   gcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTaaa                 <  1:1082308/149‑1 (MQ=255)

                                                                                                                                         gccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTc           <  2:1165813/149‑1 (MQ=255)

                                                                                                                                         gccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTc           >  2:1619133/1‑149 (MQ=255)

                                                                                                                                         gccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTc           <  1:1248964/149‑1 (MQ=255)

                                                                                                                                          ccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGGTCCTCCGCACCGAAGGATTAAGTAAATTTTTcc          >  2:322625/1‑149 (MQ=255)

                                                                                                                                          ccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGCAGGATTCAGTGAATTTTTcc          >  2:322691/1‑149 (MQ=255)

                                                                                                                                              aTCCGGCGAGGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCgg      <  1:1121215/149‑1 (MQ=255)

                                                                                                                                                 cGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAGGTAAATTTTTCCCCGACGt   >  2:581959/1‑149 (MQ=255)

                                                                                                                                                  ggCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGAGGACCGACCAACACCAGGAGATCCTCCGCTCCGAAGGATTAAGTAAATTTTTCCCCGGCGTc  <  1:1758227/149‑1 (MQ=255)

CCTGAAAAGCTGACGTTAACCAAATCCACCCTTTACCTGCCTGATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTC  >  NC_000913_3_pae_tpiA/4450745‑4451039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.