New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 292971 =108 (0.920)9 (0.080) 9/264 13.7 8.2% intergenic (‑23/+249) yagK/yagL CP4‑6 prophage; conserved protein/CP4‑6 prophage; DNA‑binding protein
?NC_000913_3_pae_tpiA 292992 = 101 (0.910)intergenic (‑44/+228) yagK/yagL CP4‑6 prophage; conserved protein/CP4‑6 prophage; DNA‑binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 113 total aligned reads displayed.

CAATTAACCTAGGATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATTATATAATACCTAT  >  NC_000913_3_pae_tpiA/292846‑293140
                                                                                                                                                  |                                                                                                                                                    
cAATTAACCTAGGATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAg                                                                                                                                                    <  1:1237831/149‑1 (MQ=255)
  aTTAACCTAGGATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATCTTCGAGGATATGTACTCCATGAGTACCTTGATATGTGTTCATAATATATACATGTATTTGGTCCTACGGTCTATAGCAGACCGTAAAggc                                                                                                                                                  >  2:1874022/1‑148 (MQ=255)
  aTTAACCTAGGATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAggg                                                                                                                                                  <  1:1910860/149‑1 (MQ=255)
       ccTAGGATACCGGTTAGTCATATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAg                                                                                                                                                    >  1:1986116/1‑142 (MQ=255)
       ccTAGGATACCGGTTAGTCATATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAg                                                                                                                                                    <  2:1986116/142‑1 (MQ=255)
       ccTAGGATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATTGCAGACCGTACCGGGATGcc                                                                                                                                             >  1:21847/1‑149 (MQ=255)
       ccTAGGATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGcc                                                                                                                                             >  2:44559/1‑149 (MQ=255)
            gATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATAca                                                                                                                                        >  2:570418/1‑149 (MQ=255)
            gATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATAAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATAca                                                                                                                                        >  1:820948/1‑149 (MQ=255)
             aTACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATAcag                                                                                                                                       <  2:1950607/149‑1 (MQ=255)
               aCCGGTTAGTCAAATAACATAATAATTTATTAATCTTATTCTGATATTCGCGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGACTATAGCAGACCGTACAGGGGTGCCaataaggc                                                                                                                                     >  1:154583/1‑142 (MQ=255)
                 cGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTCCAGGGATGCCATAaaggcag                                                                                                                                   >  2:49880/1‑149 (MQ=255)
                  ggTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATAcaggcagg                                                                                                                                  <  1:291084/149‑1 (MQ=255)
                      aGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTa                                                                                                                              >  2:1922773/1‑149 (MQ=255)
                      aGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTa                                                                                                                              >  2:1922766/1‑149 (MQ=255)
                        tCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTCCGGTATATTGCTGACCGTACAGGGATGCCATACAGGCAGGGCTAtt                                                                                                                            >  1:389505/1‑149 (MQ=255)
                        tCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTAtt                                                                                                                            >  2:1624005/1‑149 (MQ=255)
                          aaaTAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAAGATATACCTGTATTTGGTCCTACGGTCTATATCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTcc                                                                                                                          <  2:1403708/149‑1 (MQ=255)
                           aaTAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCt                                                                                                                         <  1:1272950/149‑1 (MQ=255)
                            aTAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTg                                                                                                                        <  1:1094152/149‑1 (MQ=255)
                              aaCATAATAATTTATTAATCTTACTCTGATATTCGAGGATATTTACGCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGATCGTACAGGGCTGCCATACAGGCGGGACTATTCCTggg                                                                                                                      >  1:800988/1‑148 (MQ=255)
                              aaCATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGt                                                                                                                      <  2:1687518/149‑1 (MQ=255)
                                 ataataAATTATTAATCTTACTATGATATTCGAGGCTATGGACTCCATGAGTTCCTTGATGTGTGTTGATAATATATACCTGTATTGGGTCTTACGGTGTGTAGCAGACCGTACAGTGATGCCATACAGGCAGGGCTATTCCCGTTCAc                                                                                                                   <  2:756525/149‑1 (MQ=255)
                                  taataaTTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACt                                                                                                                  >  2:393319/1‑149 (MQ=255)
                                     taatTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTc                                                                                                                           <  1:777387/137‑1 (MQ=255)
                                     taatTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTc                                                                                                                           >  2:777387/1‑137 (MQ=255)
                                         ttattaATCTTATTCTGATATTCGATGATATTTACTCCATGATTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCg                                                                                                           <  2:800988/149‑1 (MQ=255)
                                          tattaATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCgg                                                                                                          <  2:1062371/149‑1 (MQ=255)
                                            ttaATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGta                                                                                                        >  2:1721292/1‑149 (MQ=255)
                                             taATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGACAGGGCTATTCCTGGTCACTGTTGTCGGtat                                                                                                       <  1:1594701/149‑1 (MQ=255)
                                                tCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGtatata                                                                                                    >  1:688404/1‑149 (MQ=255)
                                                acTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGtatata                                                                                                    <  1:325519/148‑1 (MQ=255)
                                                      tctGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGGTTTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACATGCCTGGCTATTCCTGGTCACTGTTGTCGCTATATACTGCTa                                                                                              >  2:385141/1‑149 (MQ=255)
                                                       ctGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTAt                                                                                             <  2:1207208/149‑1 (MQ=255)
                                                        tGATACTCGCGGATATGTACTCCATGAGTACCTTGATATGTTTACACAATATCTCCCTGTATTTGCTCCTACGGTCTCTAGCAACCCGTTCACCAATGCCATCCAGGCGGGGGTAAACATGCACACCCGTTTGTGTATATACTGGTAtt                                                                                            >  2:1385455/1‑148 (MQ=255)
                                                        tGAAATTGGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATc                                                                                            <  2:573560/149‑1 (MQ=255)
                                                        ggacatTCGAGGACATGTACTACATGGGTACCTTGATATTGTTTCATAAGATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGAGGCCATACAGGCAGGGCTATTCCTGGTCCCTGTGGTCGGTATATACTGGTATc                                                                                            <  2:666606/145‑1 (MQ=255)
                                                              tCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGAttt                                                                                      <  1:570418/149‑1 (MQ=255)
                                                                gAGGATATGTACTCCATAAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTa                                                                                    <  1:838179/149‑1 (MQ=255)
                                                                       tGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACg                                                                               >  1:1159152/1‑147 (MQ=255)
                                                                       tGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACg                                                                               <  2:1159152/147‑1 (MQ=255)
                                                                        gTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGCTCAAGGTTGTCGGTATATAGTGCTATAACAGTTTAGTGTGGAc                                                                            >  1:440964/1‑149 (MQ=255)
                                                                         tACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGc                                                                                                                                              <  1:659478/82‑1 (MQ=255)
                                                                         tACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGc                                                                                                                                              >  2:659478/1‑82 (MQ=255)
                                                                         tACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATCCTGGTGTCAGATTTTAATACGTACa                                                                           >  2:220125/1‑149 (MQ=255)
                                                                         tACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACa                                                                           >  2:609219/1‑149 (MQ=255)
                                                                         tACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACa                                                                           >  1:228093/1‑149 (MQ=255)
                                                                            tCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATTCTGGTATCAGATTTTAGTACGGACATAc                                                                        >  1:211342/1‑149 (MQ=255)
                                                                            tCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATAc                                                                        <  1:1624005/149‑1 (MQ=255)
                                                                             ccATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTTTATCGCAGACCTTACAGGTATGCGGTGCAGGCAGGGCTAGTCGTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATAct                                                                       <  2:712857/149‑1 (MQ=255)
                                                                               tggAGTACCTTGATATGTTTTCATAATATATACCTGTATGTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATActga                                                                     >  2:504888/3‑149 (MQ=255)
                                                                               aTGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATActga                                                                     <  1:268775/149‑1 (MQ=255)
                                                                                  aGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATActgatct                                                                  <  1:1584980/149‑1 (MQ=255)
                                                                                       cTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATta                                                             >  1:501694/1‑149 (MQ=255)
                                                                                          gATATGTTTTCATAATATATAACTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTAACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATtacta                                                          <  2:719546/149‑1 (MQ=255)
                                                                                                ttttCAGAATACATACCTGTATTTGGTCCTCCGGTCTATAGCAGACCGTACAGGGCTGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTAGCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTa                                                    <  1:385141/149‑1 (MQ=255)
                                                                                                 tttCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTAc                                                   <  1:1721292/149‑1 (MQ=255)
                                                                                                 tttCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACAGACATACTGATCTGATTACTACTATTAc                                                   >  2:1548206/1‑149 (MQ=255)
                                                                                                  ttCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACt                                                  >  2:1660196/1‑149 (MQ=255)
                                                                                                     ataataTATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGt                                               >  1:2053967/1‑149 (MQ=255)
                                                                                                      taataTATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTg                                              >  2:242213/1‑149 (MQ=255)
                                                                                                      taataTATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTg                                              >  2:306752/1‑149 (MQ=255)
                                                                                                            ataCCTGTAGTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGTACATACTGATCTGATTACTACTCTTACTGGTGAATACa                                        <  2:887699/149‑1 (MQ=255)
                                                                                                              acttGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTCCGGACATACTGATCTGATTACTACTCTTACTGGTGAATAAAgg                                      >  2:1926553/4‑149 (MQ=255)
                                                                                                                cTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTg                                                                                                 <  1:510185/88‑1 (MQ=255)
                                                                                                                cTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTg                                                                                                 >  2:510185/1‑88 (MQ=255)
                                                                                                                cTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGgta                                    <  1:44559/149‑1 (MQ=255)
                                                                                                                cTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGgta                                    >  1:1826581/1‑149 (MQ=255)
                                                                                                                cTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATACCATACAGGCCGGGCTCACCCAGTTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGgta                                    >  1:830663/1‑149 (MQ=255)
                                                                                                                         gTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTa                           >  1:1538992/1‑149 (MQ=255)
                                                                                                                          tccgtcGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTTTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTac                          <  2:1774526/144‑1 (MQ=255)
                                                                                                                           ccTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAGTACAGGTAGTAAGAGTaca                         >  1:1196056/1‑149 (MQ=255)
                                                                                                                            cTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGaa                                            <  1:461057/129‑1 (MQ=255)
                                                                                                                            cTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGaa                                            >  2:461057/1‑129 (MQ=255)
                                                                                                                             tACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTaacca                       >  1:1202065/1‑145 (MQ=255)
                                                                                                                              aCGGTTTATAGCAGACCGTACAGGGATGCCATACAGGAAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACaa                      <  2:840793/149‑1 (MQ=255)
                                                                                                                                ggTCTATAGCAGACCGTACAGGGATGCCATATAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATg                    <  2:1218159/149‑1 (MQ=255)
                                                                                                                                cgTCCATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATg                    <  1:1109608/148‑1 (MQ=255)
                                                                                                                                 gTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGc                   <  1:1660196/149‑1 (MQ=255)
                                                                                                                                  tCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAgg                                      <  2:1089841/129‑1 (MQ=255)
                                                                                                                                  tCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAgg                                      >  1:1089841/1‑129 (MQ=255)
                                                                                                                                    tataGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGgtag                                   >  1:1442108/1‑130 (MQ=255)
                                                                                                                                    tataGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGgtag                                   <  2:1442108/130‑1 (MQ=255)
                                                                                                                                    tataGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCAt                >  1:1527583/1‑149 (MQ=255)
                                                                                                                                     ataGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTTACTGTTGTTGGTATATACTGGTATCAGATTTTAGTACTGACATACTGATCTGATTACTACTCGTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCAtt               <  2:1690718/149‑1 (MQ=255)
                                                                                                                                      taGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATtactac                                                         >  1:11134/1‑106 (MQ=255)
                                                                                                                                      taGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATta              >  2:1608527/1‑149 (MQ=255)
                                                                                                                                      taGCAGACCCTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATta              <  1:741884/149‑1 (MQ=255)
                                                                                                                                         cAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATtatat           <  1:482384/149‑1 (MQ=255)
                                                                                                                                           gACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGATGAATACAGGTAGTACGCGCCCACAATGCCAGTATataa         >  2:1337550/1‑149 (MQ=255)
                                                                                                                                              cGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATTATATAATAc      <  2:1672577/149‑1 (MQ=255)
                                                                                                                                                tACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATAc                                         <  1:1070900/112‑1 (MQ=255)
                                                                                                                                                tACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATAc                                         >  2:1070900/1‑112 (MQ=255)
                                                                                                                                                tACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATTATATAATACCt    >  1:448715/1‑149 (MQ=255)
                                                                                                                                                tACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATTATATAATACCt    <  2:2053967/149‑1 (MQ=255)
                                                                                                                                                  cAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAg                                       <  2:555697/112‑1 (MQ=255)
                                                                                                                                                  cAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAg                                       >  1:555697/1‑112 (MQ=255)
                                                                                                                                                  cAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATTATATAATACCTAt  <  1:1922766/149‑1 (MQ=255)
                                                                                                                                                  cAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATTATATAATACCTAt  <  1:1922773/149‑1 (MQ=255)
                                                                                                                                                  cAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATTATATAATACCTAt  <  1:641829/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CAATTAACCTAGGATACCGGTTAGTCAAATAACATAATAATTTATTAATCTTACTCTGATATTCGAGGATATGTACTCCATGAGTACCTTGATATGTTTTCATAATATATACCTGTATTTGGTCCTACGGTCTATAGCAGACCGTACAGGGATGCCATACAGGCAGGGCTATTCCTGGTCACTGTTGTCGGTATATACTGGTATCAGATTTTAGTACGGACATACTGATCTGATTACTACTCTTACTGGTGAATACAGGTAGTAAGAGTACACAATGCCATTATATAATACCTAT  >  NC_000913_3_pae_tpiA/292846‑293140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.