New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1911650 =	38 (1.340)	4 (0.150)	4/260	3.3	10.4%	noncoding (1911650/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1911680 =	34 (1.310)					noncoding (1911680/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAAT  >  NC_000913_3_vch_tpiA/1911512‑1911793                                                                                                                                           |                                                                                                                                                gcggcgcTGGTGGCGCTGATGCTAAATCCGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGt                                                                                                                                       <  1:51312/149‑1 (MQ=255)           tggCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGCCGATCAGGAc                                                                                                                             <  1:486137/149‑1 (MQ=255)               gcTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCAAGGGGATAGAAAAAGCGCGTCGATCAGGACgcgc                                                                                                                         <  2:58087/149‑1 (MQ=255)                cTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCt                                                                                                                        <  2:245477/149‑1 (MQ=255)                     gCTAAATGAGTTTGGAGATAATGGTACACACGGCGCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGGCTGTGTCAGTGGTTTACGTATCACTCCGCCACGGGCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTa                                                                                                                   <  2:335299/149‑1 (MQ=255)                       tAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGt                                                                                                                 >  2:385629/1‑149 (MQ=255)                       tAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGATATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGt                                                                                                                 >  2:83880/1‑149 (MQ=255)                           tCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAAAACGCGCTTTTTAGGAttt                                                                                                             >  1:83111/1‑149 (MQ=255)                               tttGGAGATAATGGTACACACGTCTCGCTCATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACtt                                                                                                         >  2:419818/1‑149 (MQ=255)                                      aTAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTa                                                                                                  <  1:275578/149‑1 (MQ=255)                                          tGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTc                                                                                              >  2:122351/1‑149 (MQ=255)                                                       tcGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGGTCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGCATTCAccag                                                                                 >  2:96928/1‑147 (MQ=255)                                                                                  gTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACgcgc                                                                                                                         >  2:174370/1‑82 (MQ=255)                                                                                  gTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACgcgc                                                                                                                         <  1:174370/82‑1 (MQ=255)                                                                                    gATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGGTCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCCCCCGTACGCAAAGCTTCAATTCGTTTATCAAgc                                                    >  1:361095/1‑149 (MQ=255)                                                                                      ttGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGCAGAAGCGGTCACTCTTTTTGGTGTTTACTTCGTATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAgcgg                                                  >  2:455046/1‑149 (MQ=255)                                                                                          tgcCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTc                                                                                      <  2:346868/109‑1 (MQ=255)                                                                                          tgcCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATAAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTc                                                                                      >  1:346868/1‑109 (MQ=255)                                                                                           gcCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGATCTTCAATTCGTTTATCCAGCGGCgggt                                             <  1:122351/149‑1 (MQ=255)                                                                                                    aGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGa                                    >  1:29004/1‑149 (MQ=255)                                                                                                     gTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATTaa                                   <  2:161066/149‑1 (MQ=255)                                                                                                     gTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaa                                   <  1:138701/149‑1 (MQ=255)                                                                                                        gTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaacaa                                <  1:300618/149‑1 (MQ=255)                                                                                                        gTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaacaa                                <  2:449619/149‑1 (MQ=255)                                                                                                               tATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTa                                                                                                            <  1:92033/66‑1 (MQ=255)                                                                                                               tATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTa                                                                                                            >  2:92033/1‑66 (MQ=255)                                                                                                               tATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATTCAGCGGCGGGTGGGTCATGAACAACTCACTg                         >  2:323108/1‑149 (MQ=255)                                                                                                               tATCACTCAGCCAAGATCCAGGGCAGAAAAAAAGCGCGTCGATCAGGACGCGCTTTGTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCCCGTACGTATCGGCGGGTGGGTCATGAACAACTCACTg                         <  2:481690/149‑1 (MQ=255)                                                                                                                aTCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGa                        <  1:83880/149‑1 (MQ=255)                                                                                                                  cACTCGGCCACGATCGAGGACATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGCCAGGTACAACTCACTGAGc                      <  2:60481/149‑1 (MQ=255)                                                                                                                    cTCAGCCACGATCAAGGGCATAAAAAGAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGTTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGa                    <  2:484940/149‑1 (MQ=255)                                                                                                                        gCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTc                >  1:340488/1‑149 (MQ=255)                                                                                                                          cACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGa              >  2:297038/1‑149 (MQ=255)                                                                                                                               tCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTAc         <  2:243471/149‑1 (MQ=255)                                                                                                                                    ggCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTa    <  2:149210/149‑1 (MQ=255)                                                                                                                                     gCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTaa   <  1:385629/149‑1 (MQ=255)                                                                                                                                      cATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAAt  <  1:419818/149‑1 (MQ=255)                                                                                                                                      cATAAAAAAAGCCCGTCGATCAGGCCGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAAt  <  2:34720/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                GCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAAT  >  NC_000913_3_vch_tpiA/1911512‑1911793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.