New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1911650 =	38 (1.340)	4 (0.150)	4/260	3.3	10.4%	noncoding (1911650/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1911680 =	34 (1.310)					noncoding (1911680/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTT  >  NC_000913_3_vch_tpiA/1911532‑1911819                                                                                                                                                     |                                                                                                                                            gCTAAATGAGTTTGGAGATAATGGTACACACGGCGCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGGCTGTGTCAGTGGTTTACGTATCACTCCGCCACGGGCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTa                                                                                                                                             <  2:335299/149‑1 (MQ=255)   tAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGt                                                                                                                                           >  2:385629/1‑149 (MQ=255)   tAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGATATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGt                                                                                                                                           >  2:83880/1‑149 (MQ=255)       tCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAAAACGCGCTTTTTAGGAttt                                                                                                                                       >  1:83111/1‑149 (MQ=255)           tttGGAGATAATGGTACACACGTCTCGCTCATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACtt                                                                                                                                   >  2:419818/1‑149 (MQ=255)                  aTAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTa                                                                                                                            <  1:275578/149‑1 (MQ=255)                      tGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTc                                                                                                                        >  2:122351/1‑149 (MQ=255)                                   tcGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGGTCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGCATTCAccag                                                                                                           >  2:96928/1‑147 (MQ=255)                                                                gATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGGTCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCCCCCGTACGCAAAGCTTCAATTCGTTTATCAAgc                                                                              >  1:361095/1‑149 (MQ=255)                                                                  ttGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGCAGAAGCGGTCACTCTTTTTGGTGTTTACTTCGTATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAgcgg                                                                            >  2:455046/1‑149 (MQ=255)                                                                      tgcCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTc                                                                                                                <  2:346868/109‑1 (MQ=255)                                                                      tgcCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATAAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTc                                                                                                                >  1:346868/1‑109 (MQ=255)                                                                       gcCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGATCTTCAATTCGTTTATCCAGCGGCgggt                                                                       <  1:122351/149‑1 (MQ=255)                                                                                aGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGa                                                              >  1:29004/1‑149 (MQ=255)                                                                                 gTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATTaa                                                             <  2:161066/149‑1 (MQ=255)                                                                                 gTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaa                                                             <  1:138701/149‑1 (MQ=255)                                                                                    gTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaacaa                                                          <  1:300618/149‑1 (MQ=255)                                                                                    gTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaacaa                                                          <  2:449619/149‑1 (MQ=255)                                                                                           tATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTa                                                                                                                                      >  2:92033/1‑66 (MQ=255)                                                                                           tATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTa                                                                                                                                      <  1:92033/66‑1 (MQ=255)                                                                                           tATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATTCAGCGGCGGGTGGGTCATGAACAACTCACTg                                                   >  2:323108/1‑149 (MQ=255)                                                                                           tATCACTCAGCCAAGATCCAGGGCAGAAAAAAAGCGCGTCGATCAGGACGCGCTTTGTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCCCGTACGTATCGGCGGGTGGGTCATGAACAACTCACTg                                                   <  2:481690/149‑1 (MQ=255)                                                                                            aTCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGa                                                  <  1:83880/149‑1 (MQ=255)                                                                                              cACTCGGCCACGATCGAGGACATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGCCAGGTACAACTCACTGAGc                                                <  2:60481/149‑1 (MQ=255)                                                                                                cTCAGCCACGATCAAGGGCATAAAAAGAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGTTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGa                                              <  2:484940/149‑1 (MQ=255)                                                                                                    gCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTc                                          >  1:340488/1‑149 (MQ=255)                                                                                                      cACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGa                                        >  2:297038/1‑149 (MQ=255)                                                                                                           tCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTAc                                   <  2:243471/149‑1 (MQ=255)                                                                                                                ggCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTa                              <  2:149210/149‑1 (MQ=255)                                                                                                                 gCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTaa                             <  1:385629/149‑1 (MQ=255)                                                                                                                  cATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAAt                            <  1:419818/149‑1 (MQ=255)                                                                                                                  cATAAAAAAAGCCCGTCGATCAGGCCGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAAt                            <  2:34720/149‑1 (MQ=255)                                                                                                                         aaaGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCagaga                     >  1:498243/1‑149 (MQ=255)                                                                                                                                      cAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTgg        >  1:335095/1‑149 (MQ=255)                                                                                                                                            gcgcTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGTAGAGAGCCCTCATGCTGGTTGctt  >  1:182387/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                            GCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAGGGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTT  >  NC_000913_3_vch_tpiA/1911532‑1911819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.