New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4549816	NA (NA)	3 (0.130)	3/272	3.3	NA	noncoding (4/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_vch_tpiA	= 4549848	NA (NA)					noncoding (36/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CACGTACCGGAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGC  >  NC_000913_3_vch_tpiA/4549670‑4549959                                                                                                                                                   |                                                                                                                                                cACGTACCGGAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGc                                                                                                                                               >  1:373685/1‑149 (MQ=255)  aCGTACCGGAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGcc                                                                                                                                              <  1:342730/149‑1 (MQ=255)             ggCAGGTGACTGCAGGGATTGTGCAATCGATTATTGGCGTGTCTTTTGTTTATCAATAAAGAAATCACAGGACATTGGTAATGCGGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGAcgc                                                                                                                                   <  1:150/149‑1 (MQ=255)                      cTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTc                                                                                                                          <  2:35095/149‑1 (MQ=255)                            ggAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTACACGGTAGCCCTTTGTAGACCAGATAAGACGCGTCAgcatcgcatca                                                                                                                    >  2:234612/1‑148 (MQ=255)                                       tCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGCCATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACaa                                                                                                         >  2:292342/1‑149 (MQ=255)                                       tCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTGATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGACGCATCTGGCATAAACaa                                                                                                         >  1:290013/1‑149 (MQ=255)                                                        ttttGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTc                                                                                        >  1:144896/1‑149 (MQ=255)                                                                        aGAAATCACAGGACATTGCTAATGCTGGTAAGCAATATTAACTGAAGCTAAAAACCAGCAAGGTAGGGCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGACATAAACACCGCGCACTTTGCTGGTCTGTTCTccccccccca                                                                        >  2:241578/1‑147 (MQ=37)                                                                                       tttttAATGCTTGTATGCAACATTACCTGAAGCTAAAAACCTGCACGTTAGCTCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCACAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTACCCGGAg                                                         <  2:49500/145‑1 (MQ=38)                                                                                           tAATGCTGGTACGCTATATTACCTGCAGCTAAAAAAATGCACGTTAGCCCGTTGTAGGCCAGATAAGACGCGTCCGCGTCGCATCTGGCATAAACAAAGCGCACTTCGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGc                                                     <  1:91062/149‑1 (MQ=39)                                                                                           tAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGGAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGAGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGc                                                     >  1:345760/1‑149 (MQ=255)                                                                                                  ggTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGa                                              <  1:373127/149‑1 (MQ=255)                                                                                                   gTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTg                                                                                      >  2:134002/1‑108 (MQ=255)                                                                                                   gTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTg                                                                                      <  1:134002/108‑1 (MQ=255)                                                                                                      cGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGt                                          >  2:27784/1‑149 (MQ=255)                                                                                                           tatTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCGGATAAGACGCGTCCGCGTCGCAAACGGCATAAACAAAGCGCAATTTGCTGGTCTGTTACCCTCACCCTAACCCTCTCCCCGGGGGGGCGAGGGGACTGTCCggg                                     >  1:12796/1‑149 (MQ=38)                                                                                                                    aaGCTAAAAACCTTCACGTTAGCTTTTTGTAGGCCAGATTAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAttttt                            <  1:19722/149‑1 (MQ=255)                                                                                                                     aGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTa                           <  1:263757/149‑1 (MQ=255)                                                                                                                       cttaaaaCCTGCACGTTAGCTCTTTGTAGGACAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGa                         <  1:151508/146‑1 (MQ=255)                                                                                                                                tGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcat                >  2:103524/1‑149 (MQ=255)                                                                                                                                tGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGAAGGGGCGGGGGGCCTGTCCGGGCCCATTTTTAGACTTTGtcat                >  2:302047/1‑149 (MQ=255)                                                                                                                                     gTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGGCGCATCTTGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTc           <  1:131269/149‑1 (MQ=255)                                                                                                                                             tttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTg   >  2:318847/1‑149 (MQ=255)                                                                                                                                             tttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAAGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCATg   >  1:65512/1‑149 (MQ=255)                                                                                                                                              ttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGc  <  1:27784/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                CACGTACCGGAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGC  >  NC_000913_3_vch_tpiA/4549670‑4549959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.