New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4549816	NA (NA)	3 (0.130)	3/272	3.3	NA	noncoding (4/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_vch_tpiA	= 4549848	NA (NA)					noncoding (36/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTAC  >  NC_000913_3_vch_tpiA/4549708‑4549986                                                                                                                                             |                                                                                                                                           tCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGCCATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACaa                                                                                                                                    >  2:292342/1‑149 (MQ=255) tCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTGATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGACGCATCTGGCATAAACaa                                                                                                                                    >  1:290013/1‑149 (MQ=255)                  ttttGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTc                                                                                                                   >  1:144896/1‑149 (MQ=255)                                  aGAAATCACAGGACATTGCTAATGCTGGTAAGCAATATTAACTGAAGCTAAAAACCAGCAAGGTAGGGCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGACATAAACACCGCGCACTTTGCTGGTCTGTTCTccccccccca                                                                                                   >  2:241578/1‑147 (MQ=37)                                                 tttttAATGCTTGTATGCAACATTACCTGAAGCTAAAAACCTGCACGTTAGCTCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCACAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTACCCGGAg                                                                                    <  2:49500/145‑1 (MQ=38)                                                     tAATGCTGGTACGCTATATTACCTGCAGCTAAAAAAATGCACGTTAGCCCGTTGTAGGCCAGATAAGACGCGTCCGCGTCGCATCTGGCATAAACAAAGCGCACTTCGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGc                                                                                <  1:91062/149‑1 (MQ=39)                                                     tAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGGAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGAGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGc                                                                                >  1:345760/1‑149 (MQ=255)                                                            ggTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGa                                                                         <  1:373127/149‑1 (MQ=255)                                                             gTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTg                                                                                                                 <  1:134002/108‑1 (MQ=255)                                                             gTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTg                                                                                                                 >  2:134002/1‑108 (MQ=255)                                                                cGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGt                                                                     >  2:27784/1‑149 (MQ=255)                                                                     tatTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCGGATAAGACGCGTCCGCGTCGCAAACGGCATAAACAAAGCGCAATTTGCTGGTCTGTTACCCTCACCCTAACCCTCTCCCCGGGGGGGCGAGGGGACTGTCCggg                                                                >  1:12796/1‑149 (MQ=38)                                                                              aaGCTAAAAACCTTCACGTTAGCTTTTTGTAGGCCAGATTAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAttttt                                                       <  1:19722/149‑1 (MQ=255)                                                                               aGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTa                                                      <  1:263757/149‑1 (MQ=255)                                                                                 cttaaaaCCTGCACGTTAGCTCTTTGTAGGACAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGa                                                    <  1:151508/146‑1 (MQ=255)                                                                                          tGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcat                                           >  2:103524/1‑149 (MQ=255)                                                                                          tGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGAAGGGGCGGGGGGCCTGTCCGGGCCCATTTTTAGACTTTGtcat                                           >  2:302047/1‑149 (MQ=255)                                                                                               gTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGGCGCATCTTGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTc                                      <  1:131269/149‑1 (MQ=255)                                                                                                       tttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTg                              >  2:318847/1‑149 (MQ=255)                                                                                                       tttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAAGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCATg                              >  1:65512/1‑149 (MQ=255)                                                                                                        ttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGc                             <  1:27784/149‑1 (MQ=255)                                                                                                                  gATAAGAGGCGTCAGCGGCGCATCTGGCATAAACAAAGCGCACTGTGCTGGTCTGTTCCCCTCGCCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAgg                   <  2:345786/149‑1 (MQ=255)                                                                                                                  gATAAGACGCGTCAGCGTCGCATCTGGCATAAACAACGCGCACTTAGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTTTGAGCCTGCCATTGGCAgg                   <  2:371281/149‑1 (MQ=255)                                                                                                                       gACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTg              >  2:259749/1‑149 (MQ=255)                                                                                                                                  gTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTaa                                                                                                  <  2:90288/54‑1 (MQ=255)                                                                                                                                  gTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTaa                                                                                                  >  1:90288/1‑54 (MQ=255)                                                                                                                                   tCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTAc  <  1:318847/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           TCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTAC  >  NC_000913_3_vch_tpiA/4549708‑4549986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.