New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2304471 =	53 (1.120)	6 (0.130)	6/272	5.5	12.1%	noncoding (55/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_vch_tpiA	= 2347207	37 (0.820)					noncoding (48/203 nt)	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGACAATGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCC  >  NC_000913_3_vch_tpiA/2304323‑2304616                                                                                                                                                     |                                                                                                                                                  cAGACAATGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTg                                                                                                                                                   >  2:126849/1‑149 (MQ=255)            gATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGAc                                                                                                                                        <  1:501187/149‑1 (MQ=255)              tgtgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGc                                                                                                                                      >  1:690980/1‑149 (MQ=255)              tgcgAAGTAACGCGTCTGGAGGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTCAAGTGCGGCACCCCGTAGGGCAGACAAGGCGATCACGGCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGc                                                                                                                                      <  2:562435/146‑1 (MQ=21)                tgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTCAACTGCCGTGAAGGGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTg                                                                                                                                    <  2:715536/149‑1 (MQ=255)                tgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCCCGCCGCATCCGACCTCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTg                                                                                                                                    >  2:75224/1‑149 (MQ=255)                tgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGACACGCCGCATCCGACCTCCAACGCCCGAGCCCGTTGCCTGAGGCAGCGCTg                                                                                                                                    >  1:616571/1‑149 (MQ=25)                     tACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGcgcg                                                                                                                               >  2:295950/1‑149 (MQ=255)                       ccGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                                                                             <  2:657147/149‑1 (MQ=255)                        cgcgTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACACCGAAGGTCGGACAAGGCGGGGACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCAACTCCGgcgagcgt                                                                                                                            >  2:92347/1‑144 (MQ=21)                           cgcTGGATGGCGGAAGTGTGAATTGACAGCGGGGTAGTGCGCTAAGCTGCCGTGAAGTGCGGCACGCCGTAGGTCTGACAAGTCGGGCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCGGGCGCGTCTTAt                                                                                                                         <  2:27266/147‑1 (MQ=17)                                 aagcagtaaGATAAAAATGCCAACCCGGTACTTCGCGAAACTGCTGTGAAGGGCGGCACCCCGTAGGTCAGACAAGGCGGCCACGCAGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGcc                                                                                                                   <  2:448970/142‑1 (MQ=14)                                 aaGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGcc                                                                                                                   <  2:46444/149‑1 (MQ=255)                                                aTTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATg                                                                                                                                            <  2:65935/109‑1 (MQ=255)                                                aTTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATg                                                                                                                                            >  1:65935/1‑109 (MQ=255)                                                 ttGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCCCTGTGACGt                                                                                                   >  1:289167/1‑149 (MQ=255)                                                      aaCGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCGTCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGGCGGTGGCTCGTCTTATCAGGCCTACACCGCTGGGAAGTggtcc                                                                                              >  1:778868/1‑145 (MQ=17)                                                       aCGCGGTAGTTCGCTAAACTGCCGTGAAGGGCGGCACCCCGGAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCa                                                                                             <  1:704/149‑1 (MQ=255)                                                              aGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTa                                                                                      <  2:707158/149‑1 (MQ=255)                                                               ggtCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAg                                                                                     <  1:241204/147‑1 (MQ=255)                                                               gTTCGCTAAACTGCCGTGAAGTGCGGCCCCCCGGAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAg                                                                                     <  1:228819/149‑1 (MQ=255)                                                                ttCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCGACCGACATCCAACGCCCGAGCCGGTGACCTGGAACGACGCTGGCGCGCCCTATCCGGCCTACACCGCTGAGAAGTACGACACCCCGCAgg                                                                                    >  2:332797/1‑149 (MQ=14)                                                                 gcGCTAAACTGCCGTGAAGGGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGt                                                                                   <  2:799189/148‑1 (MQ=255)                                                                  cGCTAAGCGTCCGGGGAGGGCGGCACCGCGTAGGTCAGACAAGGCGATCACGCCGTATCCGACCTCCAACGCCCGATCCGGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACACCGCTGCGAAGTGCGGCACCCCGTAGGTc                                                                                  <  2:772751/149‑1 (MQ=11)                                                                  cGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTc                                                                                  >  2:641112/1‑149 (MQ=255)                                                                   gCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTcg                                                                                 >  1:375036/1‑148 (MQ=255)                                                                   gCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCa                                                                                 <  1:277174/149‑1 (MQ=255)                                                                    cTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTGCACCCCGTAGGTcgg                                                                                >  1:641685/1‑147 (MQ=25)                                                                     tAAACCGCCGTGAAGCGCGGCACCCCGTAGGCCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGa                                                                               <  1:266834/149‑1 (MQ=255)                                                                       aaCTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGGCGCCCGTAGGTCGGACa                                                                             >  1:504202/1‑149 (MQ=255)                                                                          tGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAgg                                                                          >  2:443466/1‑149 (MQ=255)                                                                          tGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGCCAGCCCGCAGGTCAGACCAgg                                                                          >  1:709362/1‑149 (MQ=255)                                                                            ccGTGAAGTGCGGCACCCCGTAGGGCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCg                                                                        <  1:57022/149‑1 (MQ=255)                                                                                         cACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCCGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGGCGGACAAGCCGGTCACGACGCATc                                                           >  1:96064/1‑149 (MQ=11)                                                                                           ccccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCCAGCCGGTTGCCTGATGCGCCGCCAGCGCGCCTCCTCAGGCCTACACCGATGTCAAGTGCGGCACCCCGTCGGTGGGACAAGGCGGCAACGCCGCaccgg                                                         >  2:608216/1‑145 (MQ=11)                                                                                            cccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                                        <  1:680418/149‑1 (MQ=255)                                                                                            cccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                                        <  1:641112/149‑1 (MQ=255)                                                                                            cccGTAGGCTAGACAAGGCGGTCAGGCCGCGTCCGACAGCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACCAGGCGGTCACGCCGCATCCGa                                                        <  2:733900/149‑1 (MQ=14)                                                                                                 aGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATc                                                           >  2:412324/1‑141 (MQ=255)                                                                                                 aGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATc                                                           <  1:412324/141‑1 (MQ=255)                                                                                                  ggTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCGGATAAGGCGGTCACGCCGCATCCGACATcta                                                  >  2:188027/1‑147 (MQ=2)                                                                                                   gccAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCGGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCaa                                                 <  2:803318/147‑1 (MQ=255)                                                                                                     cAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACg                                               <  1:645862/149‑1 (MQ=255)                                                                                                          aaGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCGTACACAGCTCGGAAGTGCCCCACCCCGTAGGTCAAACAAGGCGGTCACGCCGCATCCGACACCCAACGcccac                                          >  2:411153/1‑147 (MQ=11)                                                                                                            ggCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAGGCGACGCTGGCGCGGCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGc                                        <  1:126849/149‑1 (MQ=255)                                                                                                                   aCGCCGCATCGGTGAGCACACGCGCGAGTCGGTGGCGGGAGGCGACGCTGGCGCGTCTTAACAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGCTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGc                                 <  2:153881/149‑1 (MQ=17)                                                                                                                   aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGc                                 <  1:531234/149‑1 (MQ=255)                                                                                                                   aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGc                                 <  1:669049/149‑1 (MQ=255)                                                                                                                       cgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAg                                                                                     >  2:356022/1‑93 (MQ=37)                                                                                                                            ccGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCGTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGa                        <  1:295950/149‑1 (MQ=255)                                                                                                                                     aaCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAGACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCAATCCGGTCGCCAGATCCGACGcgcgtcc               >  2:809338/1‑143 (MQ=14)                                                                                                                                     aaCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGgcgc               >  1:93875/1‑149 (MQ=255)                                                                                                                                               cggagtGCCTGATGCGCCGCTGGCGCGGCGTATCAGGACTACACCGCTGTGAAGTGCGGTACCACGTAGGTCAGACACGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCaa     <  2:770697/144‑2 (MQ=17)                                                                                                                                                  gtggCCGGAGGCGACGCTGGCGAGGCGTGTCTTCCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGcc  <  2:345942/146‑1 (MQ=14)                                                                                                                                                     |                                                                                                                                                  CAGACAATGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCC  >  NC_000913_3_vch_tpiA/2304323‑2304616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.