New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2304471 =	53 (1.120)	6 (0.130)	6/272	5.5	12.1%	noncoding (55/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_vch_tpiA	= 2347207	37 (0.820)					noncoding (48/203 nt)	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAACACCCGTGACGGCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATC  >  NC_000913_3_vch_tpiA/2347059‑2347354                                                                                                                                                     |                                                                                                                                                    ggAACACGGGTGGCGGCACTGAAGACGCACAAGACGATCTGGTGCAGTCAATCCAGCACGATGGGTGCGAAGGCGGGGCATGGAAGATATGATATTGAGATGCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACGGCTCGGTTTGTAg                                                                                                                                                     <  2:167449/148‑1 (MQ=37) aGAACACCCGTGACGGCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAg                                                                                                                                                     <  2:446924/149‑1 (MQ=255)   aaCAGCCGTGACGGGGCTGAAGACGCACAAGACGATCGGGTGCCGTAAAGCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGc                                                                                                                                                   <  2:342182/149‑1 (MQ=38)           tGACGGCGATGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAg                                                                                                                                           <  1:574297/149‑1 (MQ=255)               ggCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATGCGAcgc                                                                                                                                       >  2:259343/1‑149 (MQ=255)               ggCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGAcgc                                                                                                                                       >  1:685044/1‑149 (MQ=255)                  gcTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCACGGTTTGTAGGCCTGATAAGACGCGcc                                                                                                                                    >  2:447081/1‑149 (MQ=255)                    tGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTACGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAg                                                                                                                                  >  1:13598/1‑149 (MQ=255)                             acaAGACTATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCCTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATc                                                                                                                         <  1:783693/149‑1 (MQ=255)                                        gggTGCCGTCAATCCCGGACGATGGCTGCGAAAGCGGAGCAGCTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGt                                                                                                              <  2:504782/148‑1 (MQ=255)                                              cGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGa                                                                                                        <  1:276383/149‑1 (MQ=255)                                                      cAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGt                                                                                                >  2:565479/1‑149 (MQ=255)                                                         gACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGaa                                                                                             <  1:440060/149‑1 (MQ=255)                                                         gACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGaa                                                                                             <  1:271441/149‑1 (MQ=255)                                                          aCGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAAc                                                                                            <  1:315693/149‑1 (MQ=255)                                                            gATGGCGGGGACAGCGGTGGAGGTTGGATCTGCTATTGAGGTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATACGACGCGCCAGCGTCGCATCCGGCTCCGGGTGCCGGATGCAGCGTGATCGc                                                                                          <  2:30573/149‑1 (MQ=18)                                                                  ggggAAAGCGGCGCATGTAAGATCTGATAGTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATc                                                                                    <  2:439540/146‑1 (MQ=255)                                                                      aaaGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGc                                                                                <  1:317228/149‑1 (MQ=255)                                                                      aaaGCGGCGCATGTAAGATCTGATATGGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGTGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGc                                                                                <  1:252917/149‑1 (MQ=255)                                                                            gcgcATGTAAGATCTGATATTGCGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGGTTGGCGGCCTGCGAAGACTCCCCACCGTCGCACCAGGCCCCGGGTGCCGCATCCACCCTGAACCCCTTCTCCGccccccgc                                                                          >  2:1921/1‑144 (MQ=19)                                                                               cATGGAAGATCTGATATTGAGATGCCGGATGCGGCGTATACGGTTTATCCTGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTc                                                                       <  1:154897/149‑1 (MQ=37)                                                                                 tGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCGTGTCGGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCgg                                                                     >  1:823168/1‑149 (MQ=255)                                                                                   tAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGAt                                                                   <  2:575090/149‑1 (MQ=255)                                                                                       accTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGt                                                               <  1:469254/147‑1 (MQ=255)                                                                                         cTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCGCGGATTTGTAg                                                             >  2:770817/1‑149 (MQ=255)                                                                                          tGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCCCGGCGTTGTAgg                                                            >  1:2341/1‑149 (MQ=255)                                                                                            acatTGAGATGCCGGATGCGGCGTAAACGCCCCATCCGTCATACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAATAGACGCCTGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGcc                                                          <  1:405685/147‑1 (MQ=25)                                                                                             tatTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCt                                                         <  1:561394/149‑1 (MQ=255)                                                                                             tatTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAAGCCTGCACATACTCGCAAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCt                                                         >  1:820416/1‑149 (MQ=37)                                                                                                    aTGCCGGAGGCGGCGTAAACGCCTTAGCGGGCCTACGGCTCGGTTTGTAGGGCTGATAAGACGGGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGa                                                  <  2:135476/149‑1 (MQ=38)                                                                                                           ataaggcgTTTACGCCGCATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGAt                                                      <  2:436778/134‑1 (MQ=37)                                                                                                            tGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAg                                          <  1:19510/149‑1 (MQ=255)                                                                                                               ggcgTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGt                                       >  1:831973/1‑149 (MQ=255)                                                                                                                 cgTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGACAGCCTTCTCCGGCCTCCGGCCGGGATTTGTAGGCCTGGTAAGACGCCCCacgctcc                                     >  2:236661/1‑143 (MQ=25)                                                                                                                           ttATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGcac                           >  2:114540/1‑149 (MQ=255)                                                                                                                           ttATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGcac                           >  1:761998/1‑149 (MQ=255)                                                                                                                                   ccTACGGCTCGGTTTGTAGGCCTGATAAGACTCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGGCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATgcg                   <  1:515264/149‑1 (MQ=255)                                                                                                                                          cTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCCAGGATGCGGCGTaaa            >  1:686820/1‑149 (MQ=255)                                                                                                                                          cTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAGCAGGCCCCGGGTGCCGGATGGAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTaaa            <  2:769441/149‑1 (MQ=255)                                                                                                                                                  gTAGGCCTGAAAAGACGCGCCAGCTCCGCACCAGTCTCCGGGGGCCGAATGCAGCGTGAACGCCTTATCCGGCCAACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCACCGTCGCACCAGACACACGATGCCGCGTAAAATGCCTTa    <  2:143204/149‑1 (MQ=21)                                                                                                                                                    aGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACTCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATc  <  1:447081/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGAACACCCGTGACGGCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATC  >  NC_000913_3_vch_tpiA/2347059‑2347354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.