New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3220880 =	NA (NA)	4 (0.140)	4/264	3.9	NA	noncoding (1/31 nt)	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_vch_tpiA	3220911 =	NA (NA)					noncoding (3220911/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.

GGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCAC  >  NC_000913_3_vch_tpiA/3220735‑3221024                                                                                                                                                  |                                                                                                                                                 ggtggCCGGAACGCTCAATAACGTCAAAACTATCCGCATTGAACCGCCACTGAAACTGACCATTGAACAGTGTGGACTGGTGAACAAAGCGGTTCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCTTAATATCAAATCg                                                                                                                                               <  2:271688/149‑1 (MQ=255)              cTCAATAACGCCAAAACGATCCGCATTTAACCGCCACTAACACTAACCATTAAACAGTGTGAACAAGTAAACAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGCCGAAGAAGCGTAATATCAAATCGGATGGCGATacga                                                                                                                                  >  1:148792/1‑149 (MQ=255)                  aTAACGCCAAAACGATACGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATCTCAAATCGGATGGCGATACGACGTc                                                                                                                              >  2:306818/1‑149 (MQ=255)                   tAAAGCAAAAACGATCTGCATTGAATCGTCACTCACACGGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCg                                                                                                                             <  2:57130/149‑1 (MQ=255)                          aaaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTAGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCg                                                                                                                      >  1:75219/1‑149 (MQ=255)                                aTCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGCAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCttt                                                                                                                <  1:521275/149‑1 (MQ=255)                                     cATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTtatc                                                                                                           <  2:96351/149‑2 (MQ=255)                                     cATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCAGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCACTCCGATCTTTTtatg                                                                                                           >  2:550945/1‑148 (MQ=255)                                           aCCGCCACTGACACTGACCATTGAACAGTGTTAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGAcgc                                                                                                     <  1:533409/149‑1 (MQ=255)                                               ccACTGACACTGACAATTGAATAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTAc                                                                                                 <  2:148792/149‑1 (MQ=255)                                                                  aaCAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCg                                                                                                                             >  1:52346/1‑102 (MQ=255)                                                                  aaCAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCg                                                                                                                             <  2:52346/102‑1 (MQ=255)                                                                     aGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTcc                                                                           >  2:310725/1‑149 (MQ=255)                                                                             cTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTaa                                                                   <  1:310725/149‑1 (MQ=255)                                                                              tGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTATCGAAAAAACAAAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAAc                                                                  >  1:43468/1‑149 (MQ=255)                                                                                gtcaTCAAGGCGGCGGGCAAGGCGGTGGCGGCCATGCGCGTAAGTGTCGAAGAAGCGTAATATCGAATCGGAGGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATTATCCGCTCCGGCGTTAACAg                                                                <  2:87334/146‑1 (MQ=255)                                                                                gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTTTCGAAGAAACGTAAAATCAAATCAAATGGCAATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGTTCCGGCGTTAACAg                                                                >  1:143586/1‑149 (MQ=255)                                                                                gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAg                                                                >  1:333508/1‑149 (MQ=255)                                                                                gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATAAGACGTCACCAGCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAg                                                                >  1:320256/1‑149 (MQ=255)                                                                                      aaaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCACGCATCATCCGCCCCGGCGTTAACAGCACGCt                                                          >  2:182665/1‑149 (MQ=255)                                                                                            gctggTAAGGCGCTGGACGCCATGCGAGTAACGTTCAAACAGTCGTAATATCAAATAGGATGGCGATACGACGTCGCCATACGCCCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCATGGTTTCaat                                                    <  2:234759/145‑3 (MQ=255)                                                                                                 tAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCTTTAACAGCACGCTTTAACTGCCGt                                               >  2:498956/1‑149 (MQ=255)                                                                                                                 aTGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGACATTAACAGCACGCTTTCACTGCCGTCATCGGTTCCCGcaca                               >  2:17762/1‑149 (MQ=255)                                                                                                                       gTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACCTCGCCATCCGAACTTTTTATACGACGCGTACGCCCGCAGGCATCATACGATCCGGCGTTAACCGCACGCTTTCACTGCCGTCAGCGGTTTCCGCACACACCAg                         >  1:390699/1‑149 (MQ=255)                                                                                                                         aaGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgca                       <  1:318635/149‑1 (MQ=255)                                                                                                                         aaGTGTCGAAGAAGCGTAATACCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACACCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgca                       <  2:75219/149‑1 (MQ=255)                                                                                                                                gaagaaGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTc                <  1:400933/149‑1 (MQ=255)                                                                                                                                 aaggagCGTAATATCAAATCGGATGGCGATACGACGTAGCCATCAGATCTTTTTTTACGACGCGTGCGCCCGCAGGAATTATCCGCTCCGTCGTTAACATGACGCTTTCAGTGCGGTCATCGGTTTCCGCGCACCACAGCATGCATTcc               >  2:35313/1‑149 (MQ=255)                                                                                                                                              tCAAATCGGATGGCGATACGACGTAGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTcaccac  >  1:477266/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCAC  >  NC_000913_3_vch_tpiA/3220735‑3221024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.