New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3220880 =	NA (NA)	4 (0.140)	4/264	3.9	NA	noncoding (1/31 nt)	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_vch_tpiA	3220911 =	NA (NA)					noncoding (3220911/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.

ATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTGCAGATTGCATAAGACCAC  >  NC_000913_3_vch_tpiA/3220766‑3221058                                                                                                                                                  |                                                                                                                                                    aTCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGCAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCttt                                                                                                                                                  <  1:521275/149‑1 (MQ=255)      cATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTtatc                                                                                                                                             <  2:96351/149‑2 (MQ=255)      cATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCAGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCACTCCGATCTTTTtatg                                                                                                                                             >  2:550945/1‑148 (MQ=255)            aCCGCCACTGACACTGACCATTGAACAGTGTTAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGAcgc                                                                                                                                       <  1:533409/149‑1 (MQ=255)                ccACTGACACTGACAATTGAATAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTAc                                                                                                                                   <  2:148792/149‑1 (MQ=255)                                      aGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTcc                                                                                                             >  2:310725/1‑149 (MQ=255)                                              cTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTaa                                                                                                     <  1:310725/149‑1 (MQ=255)                                               tGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTATCGAAAAAACAAAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAAc                                                                                                    >  1:43468/1‑149 (MQ=255)                                                 gtcaTCAAGGCGGCGGGCAAGGCGGTGGCGGCCATGCGCGTAAGTGTCGAAGAAGCGTAATATCGAATCGGAGGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATTATCCGCTCCGGCGTTAACAg                                                                                                  <  2:87334/146‑1 (MQ=255)                                                 gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTTTCGAAGAAACGTAAAATCAAATCAAATGGCAATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGTTCCGGCGTTAACAg                                                                                                  >  1:143586/1‑149 (MQ=255)                                                 gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAg                                                                                                  >  1:333508/1‑149 (MQ=255)                                                 gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATAAGACGTCACCAGCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAg                                                                                                  >  1:320256/1‑149 (MQ=255)                                                       aaaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCACGCATCATCCGCCCCGGCGTTAACAGCACGCt                                                                                            >  2:182665/1‑149 (MQ=255)                                                             gctggTAAGGCGCTGGACGCCATGCGAGTAACGTTCAAACAGTCGTAATATCAAATAGGATGGCGATACGACGTCGCCATACGCCCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCATGGTTTCaat                                                                                      <  2:234759/145‑3 (MQ=255)                                                                  tAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCTTTAACAGCACGCTTTAACTGCCGt                                                                                 >  2:498956/1‑149 (MQ=255)                                                                                  aTGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGACATTAACAGCACGCTTTCACTGCCGTCATCGGTTCCCGcaca                                                                 >  2:17762/1‑149 (MQ=255)                                                                                        gTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACCTCGCCATCCGAACTTTTTATACGACGCGTACGCCCGCAGGCATCATACGATCCGGCGTTAACCGCACGCTTTCACTGCCGTCAGCGGTTTCCGCACACACCAg                                                           >  1:390699/1‑149 (MQ=255)                                                                                          aaGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgca                                                         <  1:318635/149‑1 (MQ=255)                                                                                          aaGTGTCGAAGAAGCGTAATACCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACACCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgca                                                         <  2:75219/149‑1 (MQ=255)                                                                                                 gaagaaGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTc                                                  <  1:400933/149‑1 (MQ=255)                                                                                                  aaggagCGTAATATCAAATCGGATGGCGATACGACGTAGCCATCAGATCTTTTTTTACGACGCGTGCGCCCGCAGGAATTATCCGCTCCGTCGTTAACATGACGCTTTCAGTGCGGTCATCGGTTTCCGCGCACCACAGCATGCATTcc                                                 >  2:35313/1‑149 (MQ=255)                                                                                                               tCAAATCGGATGGCGATACGACGTAGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTcaccac                                    >  1:477266/1‑149 (MQ=255)                                                                                                                                           aTCCGATCTTTTTATACGACGCGTAGGCCAGCAGGCATCATCCGCTCCGGCGTTAACAACACGCTTACACTGCCGTCATCAGATTACGCAAAAAACAGAATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTTCAGATTAAATaa        >  2:38137/1‑149 (MQ=255)                                                                                                                                               gATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTc                                                  >  1:468004/1‑103 (MQ=255)                                                                                                                                               gATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTc                                                  <  2:468004/103‑1 (MQ=255)                                                                                                                                                aTCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTTATGATTGCAAAAAacca   >  1:388664/1‑149 (MQ=255)                                                                                                                                                aTCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTGAAGATTGCATAAGacca   >  1:129937/1‑149 (MQ=255)                                                                                                                                                aTCTTTTTATACGACGCGTACGCCCGAAGGCAGCATCCGCTCCGGCGATAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGGTTCACCACGCATTTTCGCTTTTTGCAGATTGCATAAGacca   >  2:318553/1‑149 (MQ=255)                                                                                                                                                 ccTTTTTATACGACGCGTACGCCCACAGGCATCATCCGCTCCGGCGTGAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTGCAGATTGCATAAGaccac  <  2:26856/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    ATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTGCAGATTGCATAAGACCAC  >  NC_000913_3_vch_tpiA/3220766‑3221058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.