New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4549895	NA (NA)	5 (0.110)	4/276	6.7	8.3%	noncoding (4549895/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4549908	55 (1.200)					noncoding (4549908/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTC  >  NC_000913_3_vch_tpiA/4549747‑4550042                                                                                                                                                     |                                                                                                                                                    cacaGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCctc                                                                                                                                                     >  2:340355/1‑149 (MQ=255)     gggcATTGCTAATGCTGGTACGCAATATTACCTTAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTccc                                                                                                                                                 <  1:679442/146‑1 (MQ=255)         aTTGCTAATGCTGGTACGCAATATTACCTGACGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTAACCCTAACCCTCTCCCCGGa                                                                                                                                             >  2:422116/1‑149 (MQ=255)          ttGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAg                                                                                                                                            <  1:797460/149‑1 (MQ=255)                aTGCCGGTACGCAATCTCACCGGAAGGTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGCCAGCGTCGCAGCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGa                                                                                                                                      <  2:407627/149‑1 (MQ=37)                        aCGCAATATTACCTGGAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTg                                                                                                                              <  2:318115/149‑1 (MQ=255)                            aaTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGGCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCCGAGGGGCGAGGGGACTGTCCg                                                                                                                          >  2:230888/1‑149 (MQ=255)                                 tACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGcac                                                                                                                     <  1:272338/149‑1 (MQ=255)                                    cagAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCCTAAACACCGCACACTTTGCTGGTCTGTTCCCCTCCCCCTAACCCGCCTCCCGTCACGGCCCGGGTACTGACCGGGcaacct                                                                                                                  >  2:374020/3‑145 (MQ=25)                                    cTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAtt                                                                                                                  >  1:483972/1‑149 (MQ=255)                                       aaGCTACAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAttttt                                                                                                               >  2:9263/1‑149 (MQ=255)                                        aGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTa                                                                                                              >  1:789469/1‑149 (MQ=255)                                          cTAAAAACCGGCAGGGTAACCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCAGCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGa                                                                                                            <  2:751567/149‑1 (MQ=39)                                              aaaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGCTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGTCACATTTTTAGAtttt                                                                                                        <  2:690068/149‑1 (MQ=255)                                                  cTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGa                                                                                                                                 <  1:816532/120‑1 (MQ=255)                                                  cTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGa                                                                                                                                 >  2:816532/1‑120 (MQ=255)                                                     cACGTTCGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTTACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcatca                                                                                                 <  2:402282/149‑1 (MQ=255)                                                      aCGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGAGAGTCTCTTCCACTGACCCTAACCCTCTCCCCGGAGGGGCGAGCGGACTGTCCAGGCACATTTTTACACTTTGCCTTCAg                                                                                                >  2:119286/1‑149 (MQ=37)                                                           aGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACCTTTTTAGACTTTGTCATCAGTCCGa                                                                                           >  2:44304/1‑149 (MQ=255)                                                               cTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCt                                                                                       >  1:561491/1‑149 (MQ=255)                                                               cTTTGGAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGAAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGCCATCAGTCTGAGCCt                                                                                       >  2:13556/1‑149 (MQ=255)                                                                tttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTg                                                                                      >  2:794590/1‑149 (MQ=255)                                                                      ggCCAGATAAGACGCGTCAGCTCCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTg                                                                                <  2:735323/149‑1 (MQ=255)                                                                       gCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAAGCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACGTTTTTAGACTTTGTCATCAGCCTGAGCCTGCCATTgg                                                                               >  1:643914/1‑149 (MQ=255)                                                                       gCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTgg                                                                               <  1:475558/149‑1 (MQ=255)                                                                        ccAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGTGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCAATGGc                                                                              <  1:327964/149‑1 (MQ=255)                                                                        ccAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCCGTCTGCGCCTGCCAtggac                                                                              >  1:812524/1‑145 (MQ=255)                                                                        catcgtgaGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTATCCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGc                                                                              <  2:632757/142‑1 (MQ=255)                                                                         cAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCa                                                                             <  1:340355/149‑1 (MQ=255)                                                                              aaGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCAATGGCAGGctc                                                                        <  1:758434/149‑1 (MQ=255)                                                                                 aCGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTgg                                                                     >  2:290388/1‑149 (MQ=255)                                                                                      tCATCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGACTGAGCCTGCCATTGGCAGGCTCTGGTGTcc                                                                <  1:484104/149‑1 (MQ=255)                                                                                           gTCGCATCTGGCACAAACAAAGCGCACTTTGCAGGTCAGTACACCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGCACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTa                                                           <  1:284124/149‑1 (MQ=255)                                                                                                     gCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCGGTCTGAGCCTGCCATTGGCAGGCTCTTGTGTCCTTTTTCGTTACCTTg                                                 >  2:65974/1‑149 (MQ=38)                                                                                                      cATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGc                                                >  1:176759/1‑149 (MQ=255)                                                                                                        tAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAAGGGCGAGGGGCCTCTCCGGGCACATTTTTAGACTTTGTCCTCCGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACTCTAccctcctc                                              >  2:29182/1‑143 (MQ=38)                                                                                                          aaCAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCtaa                                             >  1:1661/1‑148 (MQ=255)                                                                                                          aaCAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCtaa                                             <  2:1661/148‑1 (MQ=255)                                                                                                                  gcagtgtGCTGGGCTGTTCCGCTCACCCTAGCCGTGTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGca                                    <  2:758375/143‑1 (MQ=38)                                                                                                                         gCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCTGGCACATTTTTAGCCTTGCGCTCCTGTCTGGGCCGGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACaataat                             <  2:135514/149‑1 (MQ=37)                                                                                                                         gCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGCCTTTGTCATCAGTCTGAGCATGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACaataat                             <  2:637012/149‑1 (MQ=255)                                                                                                                             gTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCCCATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAga                         >  1:298241/1‑148 (MQ=255)                                                                                                                             gTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCacc                         >  1:480516/1‑147 (MQ=255)                                                                                                                                 gTTCCCCTCACCCTAACGCGCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCaa                     <  2:264322/149‑1 (MQ=255)                                                                                                                                    ccccTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCa                  >  1:155353/1‑149 (MQ=255)                                                                                                                                       cTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACgg               >  1:673450/1‑149 (MQ=255)                                                                                                                                        tCACCCTAACACTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGGCATCAGTCTGGGCCTGCCATTGGCAGGCTCTGGTTTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGa              >  1:306320/1‑149 (MQ=255)                                                                                                                                           cccTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGtt           <  1:769881/149‑1 (MQ=255)                                                                                                                                           cccTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGtt           <  2:835157/149‑1 (MQ=255)                                                                                                                                           cccTAACCCGCCCCCCGGAGGGGCGAGGGGACTGTCTGGTCACATTTTTACACTCTGTCATCTGACTGCGTCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCGAATAATCAGCACAATAATCAGCCCAACCACGGAGtt           <  2:92662/149‑1 (MQ=255)                                                                                                                                            ccTAACCCTCTCCCCGGAGGGGTGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATAGGCCCAACAACGGAGGTg          >  1:92662/1‑149 (MQ=255)                                                                                                                                              tAACACTCGCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGAc        <  1:623247/149‑1 (MQ=255)                                                                                                                                                  ccTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGa              >  2:521527/1‑139 (MQ=255)                                                                                                                                                  ccTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGa              <  1:521527/139‑1 (MQ=255)                                                                                                                                                    tctcCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGGCTTTGTCATCAGTCTGAGCCTGCCATTGGCAGTCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAACACAATAATCAGCCCAACCACGGAGTTGCCCAGATc  >  2:320177/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTC  >  NC_000913_3_vch_tpiA/4549747‑4550042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.