New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4549895	NA (NA)	5 (0.110)	4/276	6.7	8.3%	noncoding (4549895/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4549908	55 (1.200)					noncoding (4549908/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGA  >  NC_000913_3_vch_tpiA/4549762‑4550049                                                                                                                                                   |                                                                                                                                              aTGCCGGTACGCAATCTCACCGGAAGGTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGCCAGCGTCGCAGCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGa                                                                                                                                             <  2:407627/149‑1 (MQ=37)         aCGCAATATTACCTGGAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTg                                                                                                                                     <  2:318115/149‑1 (MQ=255)             aaTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGGCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCCGAGGGGCGAGGGGACTGTCCg                                                                                                                                 >  2:230888/1‑149 (MQ=255)                  tACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGcac                                                                                                                            <  1:272338/149‑1 (MQ=255)                     cagAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCCTAAACACCGCACACTTTGCTGGTCTGTTCCCCTCCCCCTAACCCGCCTCCCGTCACGGCCCGGGTACTGACCGGGcaacct                                                                                                                         >  2:374020/3‑145 (MQ=25)                     cTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAtt                                                                                                                         >  1:483972/1‑149 (MQ=255)                        aaGCTACAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAttttt                                                                                                                      >  2:9263/1‑149 (MQ=255)                         aGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTa                                                                                                                     >  1:789469/1‑149 (MQ=255)                           cTAAAAACCGGCAGGGTAACCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCAGCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGa                                                                                                                   <  2:751567/149‑1 (MQ=39)                               aaaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGCTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGTCACATTTTTAGAtttt                                                                                                               <  2:690068/149‑1 (MQ=255)                                   cTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGa                                                                                                                                        >  2:816532/1‑120 (MQ=255)                                   cTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGa                                                                                                                                        <  1:816532/120‑1 (MQ=255)                                      cACGTTCGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTTACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcatca                                                                                                        <  2:402282/149‑1 (MQ=255)                                       aCGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGAGAGTCTCTTCCACTGACCCTAACCCTCTCCCCGGAGGGGCGAGCGGACTGTCCAGGCACATTTTTACACTTTGCCTTCAg                                                                                                       >  2:119286/1‑149 (MQ=37)                                            aGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACCTTTTTAGACTTTGTCATCAGTCCGa                                                                                                  >  2:44304/1‑149 (MQ=255)                                                cTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCt                                                                                              >  1:561491/1‑149 (MQ=255)                                                cTTTGGAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGAAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGCCATCAGTCTGAGCCt                                                                                              >  2:13556/1‑149 (MQ=255)                                                 tttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTg                                                                                             >  2:794590/1‑149 (MQ=255)                                                       ggCCAGATAAGACGCGTCAGCTCCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTg                                                                                       <  2:735323/149‑1 (MQ=255)                                                        gCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAAGCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACGTTTTTAGACTTTGTCATCAGCCTGAGCCTGCCATTgg                                                                                      >  1:643914/1‑149 (MQ=255)                                                        gCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTgg                                                                                      <  1:475558/149‑1 (MQ=255)                                                         ccAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGTGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCAATGGc                                                                                     <  1:327964/149‑1 (MQ=255)                                                         ccAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCCGTCTGCGCCTGCCAtggac                                                                                     >  1:812524/1‑145 (MQ=255)                                                         catcgtgaGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTATCCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGc                                                                                     <  2:632757/142‑1 (MQ=255)                                                          cAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCa                                                                                    <  1:340355/149‑1 (MQ=255)                                                               aaGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCAATGGCAGGctc                                                                               <  1:758434/149‑1 (MQ=255)                                                                  aCGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTgg                                                                            >  2:290388/1‑149 (MQ=255)                                                                       tCATCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGACTGAGCCTGCCATTGGCAGGCTCTGGTGTcc                                                                       <  1:484104/149‑1 (MQ=255)                                                                            gTCGCATCTGGCACAAACAAAGCGCACTTTGCAGGTCAGTACACCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGCACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTa                                                                  <  1:284124/149‑1 (MQ=255)                                                                                      gCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCGGTCTGAGCCTGCCATTGGCAGGCTCTTGTGTCCTTTTTCGTTACCTTg                                                        >  2:65974/1‑149 (MQ=38)                                                                                       cATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGc                                                       >  1:176759/1‑149 (MQ=255)                                                                                         tAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAAGGGCGAGGGGCCTCTCCGGGCACATTTTTAGACTTTGTCCTCCGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACTCTAccctcctc                                                     >  2:29182/1‑143 (MQ=38)                                                                                           aaCAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCtaa                                                    >  1:1661/1‑148 (MQ=255)                                                                                           aaCAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCtaa                                                    <  2:1661/148‑1 (MQ=255)                                                                                                   gcagtgtGCTGGGCTGTTCCGCTCACCCTAGCCGTGTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGca                                           <  2:758375/143‑1 (MQ=38)                                                                                                          gCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCTGGCACATTTTTAGCCTTGCGCTCCTGTCTGGGCCGGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACaataat                                    <  2:135514/149‑1 (MQ=37)                                                                                                          gCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGCCTTTGTCATCAGTCTGAGCATGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACaataat                                    <  2:637012/149‑1 (MQ=255)                                                                                                              gTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCCCATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAga                                >  1:298241/1‑148 (MQ=255)                                                                                                              gTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCacc                                >  1:480516/1‑147 (MQ=255)                                                                                                                  gTTCCCCTCACCCTAACGCGCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCaa                            <  2:264322/149‑1 (MQ=255)                                                                                                                     ccccTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCa                         >  1:155353/1‑149 (MQ=255)                                                                                                                        cTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACgg                      >  1:673450/1‑149 (MQ=255)                                                                                                                         tCACCCTAACACTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGGCATCAGTCTGGGCCTGCCATTGGCAGGCTCTGGTTTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGa                     >  1:306320/1‑149 (MQ=255)                                                                                                                            cccTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGtt                  <  1:769881/149‑1 (MQ=255)                                                                                                                            cccTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGtt                  <  2:835157/149‑1 (MQ=255)                                                                                                                            cccTAACCCGCCCCCCGGAGGGGCGAGGGGACTGTCTGGTCACATTTTTACACTCTGTCATCTGACTGCGTCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCGAATAATCAGCACAATAATCAGCCCAACCACGGAGtt                  <  2:92662/149‑1 (MQ=255)                                                                                                                             ccTAACCCTCTCCCCGGAGGGGTGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATAGGCCCAACAACGGAGGTg                 >  1:92662/1‑149 (MQ=255)                                                                                                                               tAACACTCGCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGAc               <  1:623247/149‑1 (MQ=255)                                                                                                                                   ccTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGa                     <  1:521527/139‑1 (MQ=255)                                                                                                                                   ccTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGa                     >  2:521527/1‑139 (MQ=255)                                                                                                                                     tctcCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGGCTTTGTCATCAGTCTGAGCCTGCCATTGGCAGTCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAACACAATAATCAGCCCAACCACGGAGTTGCCCAGATc         >  2:320177/1‑149 (MQ=255)                                                                                                                                         cccGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCCGCTCccgc     >  2:328793/1‑149 (MQ=255)                                                                                                                                         cccGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCcagc     >  1:351175/1‑149 (MQ=255)                                                                                                                                         cccGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTCTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGCGTTGaccagcaccagc     >  2:612208/1‑149 (MQ=255)                                                                                                                                            gggggggggAAGGGACTGTCTGGGCACATTTCCGGACGTGATCAGCAGTCTGAGCCCGCGATTGTCAAGCGCTGGTGTCCTTTTCTGCTACCATGCTAATAACCCGCACAATAATCAGCTCAACGTCGGAGTTGACCAGCTCCAGCAGa  <  2:702671/146‑1 (MQ=255)                                                                                                                                            ggAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGa  >  1:752160/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                              ATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGA  >  NC_000913_3_vch_tpiA/4549762‑4550049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.