New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2569369 =	46 (1.200)	4 (0.110)	4/276	5.1	8.6%	noncoding (2569369/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2569434 =	40 (1.080)					noncoding (2569434/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACACACGTCGGTAATGCACGGTTCGCCCACCGGACATGGCCAGAGCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCC  >  NC_000913_3_vch_tpiA/2569222‑2569517                                                                                                                                                    |                                                                                                                                                     gCACACACGTCGGTAATGCACGGTTCGCCCACCGGACATGGCCAGAGCGTCATGGCGATACCTTTAACGTTCAGGCTACGCGTCAGCCCTGCGGCCATCGCGGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGccc                                                                                                                                                     <  2:511143/149‑1 (MQ=255)        tgTCGGTAATGCAGGGTTCGCCCACCGGACATGGCGAACGCTTTATGGCGGGACTTGTAACGGTCTGGCTACGCGTCAGCGCGGCGGTCATCCCTGCCTGATGCAAAACGCTGTCGGCCATCACGAACAGATGTTTCAGCCCACGCGtt                                                                                                                                              <  2:340189/148‑1 (MQ=255)         gTCGGTAATGCACGGTTCGCCCACCGGACATGGCCAGAGCGCCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGTTCATCCCTGCCTGATCCAAAAAGCTGTCTGCCATCTCGAACACATGTTTCACCCGAcaggtct                                                                                                                                             >  2:506712/1‑143 (MQ=255)                        ttCGCCCGCCGGACATGGCCAGAGCGTAATGGAGATACCACAAGCGGCCACTCGGCGCGACAGCCCGGCGGCCATCCCTGCCTAATGCAAAAAGCGGTCTGCCATCACGAACAGGAGTTTCAGCCCCAGCGTTTTCGCTTGCTGTccca                                                                                                                              >  2:472358/1‑147 (MQ=255)                            cccACCGGACATGGCCAGCGCGTCCTGGCGGTACCTTTAACGGTCAGGCTACGCGTCAGCCCGGAGGTCATCCCTGCCGGATGCAAAAAGCTGTCTGCCATCACGCACAGAAGTGTTAGCCCACACGGTTGCGCCTGCTGGACGCACCt                                                                                                                          >  2:438313/1‑149 (MQ=255)                             ccACCGGACATGGCCAGAGCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAAc                                                                                                                           <  1:106924/147‑1 (MQ=255)                             ccACCGGACATGGCCAGAGCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAAc                                                                                                                           >  2:106924/1‑147 (MQ=255)                             ccACCGGACATGGCCAGAGCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTg                                                                                                                         <  1:496099/149‑1 (MQ=255)                               aCCGGACATGGCCAGAGCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGCTTGCGCTTGCTGTCCGCAACTGCt                                                                                                                       >  2:271201/1‑149 (MQ=255)                                 cGGACATGGCCAGAGCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGCTGCAAAAAGCCGTCTGCCATCACGAACCGATCTTTAAGCCCACGCGGTGGCCCTTTCTGTCCCCACCTGCTCa                                                                                                                     >  2:636907/1‑149 (MQ=255)                                       tGGCCAGAGCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGAAGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCCCCGAGc                                                                                                               >  2:61428/1‑149 (MQ=255)                                            agagCGCCAGGGCGATTCCTTTAACGGTCAGGCTACCCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGa                                                                                                          <  2:603755/149‑1 (MQ=255)                                             gagCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGAc                                                                                                         <  2:490426/149‑1 (MQ=255)                                                   cATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACAGCaag                                                                                                   <  2:396422/149‑2 (MQ=255)                                                    aTGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAACGCTTTCTGCCATCTCGAACAGATGTTTTAGCCCACGCGTTTGCGCTTGCGGTCCGCAACGGCTCTCCGAGCGCGGACCGTAAAg                                                                                                  >  1:172865/1‑149 (MQ=255)                                                     tGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGc                                                                                                 >  1:387472/1‑149 (MQ=255)                                                     tGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGc                                                                                                 >  1:637322/1‑149 (MQ=255)                                                      ggCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCg                                                                                                >  1:27471/1‑149 (MQ=255)                                                      ggCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCg                                                                                                >  1:364578/1‑149 (MQ=255)                                                       gcaattccTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAACCTGTCCGCCATCACGACCAGATGCTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGt                                                                                               <  2:425947/143‑1 (MQ=255)                                                              cTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCACCTGCCCACCGAGCCCGGACCGCAAGGCGCCACCGGt                                                                                        >  1:411501/1‑149 (MQ=255)                                                               tgtAACGGTCAGGCTTCGCGTCAGTCGGGTGGTCATCCCTGCCTGATGCAAAAAGTTGTCTGCCATTACGAACAGATGTTTCAGCCCAAGCGTTTGCGTTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTg                                                                                       <  2:617694/147‑1 (MQ=255)                                                                  aaCGGTCAGGCTACTCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCCTCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTGGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGaa                                                                                    <  2:132793/149‑1 (MQ=255)                                                                   aCGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCGGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAAc                                                                                   <  2:573101/149‑1 (MQ=255)                                                                    cGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAGGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACg                                                                                  <  2:99426/149‑1 (MQ=255)                                                                                gcgTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGttttt                                                                      >  2:69351/1‑149 (MQ=255)                                                                                    caccccGGCGGTCATCCCTTGCGTAGTCAAAAAGCTGTCTGCCATCACAAACAGATTTTTCAGCCCACTCGTTTGCACTTGCTGTCCCCAACTGCTCACCGAGCCCGGACCGCAAATCTTCACCGTTGGAACGCTAAATGTTTTTAccc                                                                  <  2:602660/146‑1 (MQ=255)                                                                                      gCCCGGCGGTGATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTTCTAGCAAAACAACCGCAACGCGTCAACGGGAGAACGCTAAATGTTTTTACCCGt                                                                >  1:658035/1‑149 (MQ=255)                                                                                          ggcggTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCa                                                            <  1:69351/149‑1 (MQ=255)                                                                                                 aTCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGCTGCAGATTCAg                                                     >  2:530630/1‑149 (MQ=255)                                                                                                            aTGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACg                                          >  2:655786/1‑149 (MQ=255)                                                                                                               cAAAAAGCTGCCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCt                                       <  1:641407/149‑1 (MQ=255)                                                                                                                 aaaaGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTGACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGa                                     <  1:133265/149‑1 (MQ=255)                                                                                                                 aaaaGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTTGAACGCTAAATGTTTTTACCCGTTCCAGATCCAGGGTATCGACCGCCTGa                                     >  2:1259/1‑149 (MQ=255)                                                                                                                   gaGCTGTCTGCCAGCATGAACAGATGTTTCAGCCCTGGCGTGTGCGCTTGCTTTCCGCAACTGCGCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGaaa                                   <  2:424222/148‑1 (MQ=255)                                                                                                                    aGCGGTCTGCCATCACGAACAGATTTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAag                                  <  2:335131/149‑1 (MQ=255)                                                                                                                             ccATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTg                                                                                       <  1:441608/87‑1 (MQ=255)                                                                                                                             ccATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTg                                                                                       >  2:441608/1‑87 (MQ=255)                                                                                                                             ccATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTc                         >  1:289844/1‑149 (MQ=255)                                                                                                                               aTCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTg                       >  2:573470/1‑149 (MQ=255)                                                                                                                                tCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCCCCGAGCCGGGACCGCTAAGCGTCACCGGTGGCACGCTAAATGTTTTTACGCGTTGCAGATCCAGGGCTTCGAAGGGCTGTAAGCGCGGGGTTTGc                      >  2:39471/1‑149 (MQ=255)                                                                                                                                         gATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCAttt             <  1:506712/149‑1 (MQ=255)                                                                                                                                            gTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGc          >  1:565549/1‑149 (MQ=255)                                                                                                                                                 gttccACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAAc                                                                                   <  1:180250/68‑1 (MQ=255)                                                                                                                                                 gttccACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAAc                                                                                   >  2:180250/4‑71 (MQ=255)                                                                                                                                                  gCCCACGCGTTCGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCATCCGCTATCTGGGTCTGCAATTCATTTTGCATATAg    <  2:650911/149‑1 (MQ=255)                                                                                                                                                  gCCCACGCGTGTGCGCCTGCTGTCCGCAACTGCTCACCGGGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTAGCGAACCCCTGCGTTTGCTGTGTCTGCAATTCATTTTGCATATAg    <  2:650854/149‑1 (MQ=255)                                                                                                                                                   cccACGCGTGTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGc   <  2:658035/149‑1 (MQ=255)                                                                                                                                                    ccACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAaga                                 >  1:431534/1‑118 (MQ=255)                                                                                                                                                    ccACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAaga                                 <  2:431534/118‑1 (MQ=255)                                                                                                                                                    ccACGCGTTTGCGCTTGCTGTCCACCACTCCTCACACAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATGCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGcc  >  1:333237/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCACACACGTCGGTAATGCACGGTTCGCCCACCGGACATGGCCAGAGCGTCATGGCGATACCTTTAACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCC  >  NC_000913_3_vch_tpiA/2569222‑2569517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.