New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2569369 =	46 (1.200)	4 (0.110)	4/276	5.1	8.6%	noncoding (2569369/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2569434 =	40 (1.080)					noncoding (2569434/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGCCCACTACTGGCGATCGCCAGCGGGGTCATAAACAAACTGTGCTGCG  >  NC_000913_3_vch_tpiA/2569287‑2569580                                                                                                                                                    |                                                                                                                                                   aaCGGTCAGGCTACTCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCCTCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTGGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGaa                                                                                                                                                   <  2:132793/149‑1 (MQ=255)  aCGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCGGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAAc                                                                                                                                                  <  2:573101/149‑1 (MQ=255)   cGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAGGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACg                                                                                                                                                 <  2:99426/149‑1 (MQ=255)               gcgTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGttttt                                                                                                                                     >  2:69351/1‑149 (MQ=255)                   caccccGGCGGTCATCCCTTGCGTAGTCAAAAAGCTGTCTGCCATCACAAACAGATTTTTCAGCCCACTCGTTTGCACTTGCTGTCCCCAACTGCTCACCGAGCCCGGACCGCAAATCTTCACCGTTGGAACGCTAAATGTTTTTAccc                                                                                                                                 <  2:602660/146‑1 (MQ=255)                     gCCCGGCGGTGATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTTCTAGCAAAACAACCGCAACGCGTCAACGGGAGAACGCTAAATGTTTTTACCCGt                                                                                                                               >  1:658035/1‑149 (MQ=255)                         ggcggTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCa                                                                                                                           <  1:69351/149‑1 (MQ=255)                                aTCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGCTGCAGATTCAg                                                                                                                    >  2:530630/1‑149 (MQ=255)                                           aTGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACg                                                                                                         >  2:655786/1‑149 (MQ=255)                                              cAAAAAGCTGCCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCt                                                                                                      <  1:641407/149‑1 (MQ=255)                                                aaaaGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTGACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGa                                                                                                    <  1:133265/149‑1 (MQ=255)                                                aaaaGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTTGAACGCTAAATGTTTTTACCCGTTCCAGATCCAGGGTATCGACCGCCTGa                                                                                                    >  2:1259/1‑149 (MQ=255)                                                  gaGCTGTCTGCCAGCATGAACAGATGTTTCAGCCCTGGCGTGTGCGCTTGCTTTCCGCAACTGCGCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGaaa                                                                                                  <  2:424222/148‑1 (MQ=255)                                                   aGCGGTCTGCCATCACGAACAGATTTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAag                                                                                                 <  2:335131/149‑1 (MQ=255)                                                            ccATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTc                                                                                        >  1:289844/1‑149 (MQ=255)                                                              aTCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTg                                                                                      >  2:573470/1‑149 (MQ=255)                                                               tCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCCCCGAGCCGGGACCGCTAAGCGTCACCGGTGGCACGCTAAATGTTTTTACGCGTTGCAGATCCAGGGCTTCGAAGGGCTGTAAGCGCGGGGTTTGc                                                                                     >  2:39471/1‑149 (MQ=255)                                                                        gATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCAttt                                                                            <  1:506712/149‑1 (MQ=255)                                                                           gTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGc                                                                         >  1:565549/1‑149 (MQ=255)                                                                                gttccACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAAc                                                                                                                                                  <  1:180250/68‑1 (MQ=255)                                                                                gttccACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAAc                                                                                                                                                  >  2:180250/4‑71 (MQ=255)                                                                                 gCCCACGCGTTCGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCATCCGCTATCTGGGTCTGCAATTCATTTTGCATATAg                                                                   <  2:650911/149‑1 (MQ=255)                                                                                 gCCCACGCGTGTGCGCCTGCTGTCCGCAACTGCTCACCGGGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTAGCGAACCCCTGCGTTTGCTGTGTCTGCAATTCATTTTGCATATAg                                                                   <  2:650854/149‑1 (MQ=255)                                                                                  cccACGCGTGTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGc                                                                  <  2:658035/149‑1 (MQ=255)                                                                                   ccACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAaga                                                                                                >  1:431534/1‑118 (MQ=255)                                                                                   ccACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAaga                                                                                                <  2:431534/118‑1 (MQ=255)                                                                                   ccACGCGTTTGCGCTTGCTGTCCACCACTCCTCACACAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATGCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGcc                                                                 >  1:333237/1‑149 (MQ=255)                                                                                    cACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAACTGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGccc                                                                >  2:561073/1‑149 (MQ=255)                                                                                         gTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCg                                                           <  1:573470/149‑1 (MQ=255)                                                                                          tgtGCGCTTGCTGTCCGCAACTGCTCAGCGGGCCCGGAGCGCGAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGGTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGc                                                          <  2:411501/147‑1 (MQ=255)                                                                                                 tggCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTtctct                                                   <  1:472358/147‑1 (MQ=255)                                                                                                     tGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGcc                                               >  2:492875/1‑149 (MQ=255)                                                                                                     tGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGc                                                >  1:180447/1‑148 (MQ=255)                                                                                                     tGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGc                                                <  2:180447/148‑1 (MQ=255)                                                                                                       gccGCAACTGCTCCCCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGCCCa                                             <  1:277758/148‑1 (MQ=255)                                                                                                              cTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCCCGCCCACTACTgg                                      <  1:271201/149‑1 (MQ=255)                                                                                                                       gAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGCCCACTACTGGCGATCGCCa                             <  1:655786/149‑1 (MQ=255)                                                                                                                            cGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGCCCACTACTGGCGATCGCCAGCggg                        <  2:289844/149‑1 (MQ=255)                                                                                                                                  gCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCAGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCGCTCCGCTTTCCCTCGCCCACTACTGGCGATGGCCAGCGGGGTCATa                  >  2:325436/1‑149 (MQ=255)                                                                                                                                    aaaGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGCCCACTACTGGCGATCGCCAGCGGGGTCATaaa                >  2:667893/1‑149 (MQ=255)                                                                                                                                          tCACCGGTGGATCGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATCGCGCCTCCGCCTTCTCTCGCCCACTACTGGCGATCGCCAGCGGGGTCATAAACAAACt          <  1:636907/149‑1 (MQ=255)                                                                                                                                             ccGGAGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGCCCACTACTGGCGATCGCCAGCGGGGTCATAAACAAACtgtg       <  2:240912/149‑1 (MQ=255)                                                                                                                                                  ggAACGCTAAATGTTTTTACCCGTTGCAGCTTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCCTTCTCTCGCCCACTCCTGGCGATCGCCACCGGGGTCATAAACAAACTGTCCTGCg  <  2:333237/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AACGGTCAGGCTACGCGTCAGCCCGGCGGTCATCCCTGCCTGATGCAAAAAGCTGTCTGCCATCACGAACAGATGTTTCAGCCCACGCGTTTGCGCTTGCTGTCCGCAACTGCTCACCGAGCCCGGACCGCAAAGCGTCACCGGTGGAACGCTAAATGTTTTTACCCGTTGCAGATTCAGGGTATCGAACGCCTGAAAGAGCGCGGTCTGCAATTCATTTTGCATATAGCCCCTCCGCTTTCTCTCGCCCACTACTGGCGATCGCCAGCGGGGTCATAAACAAACTGTGCTGCG  >  NC_000913_3_vch_tpiA/2569287‑2569580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.