New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 165253 =1127 (0.620)148 (0.090) 69/220 50.1 13.5% intergenic (+217/‑325) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
?CP016816 = 165249 920 (0.580)intergenic (+213/‑329) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1268 total aligned reads displayed.

ATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTA  >  CP016816/165126‑165380
                                                                                                                                   |                                                                                                                                 
atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑t‑ttt                                                                                                                                   >  2:395949/1‑128 (MQ=255)
   tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑t‑tttttt                                                                                                                                >  2:241528/1‑128 (MQ=255)
       gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGATCTTGTAAAAAATA‑GC‑t‑tttttttttt                                                                                                                            >  1:433581/1‑128 (MQ=255)
       gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑t‑tttttttttt                                                                                                                            >  1:1043048/1‑128 (MQ=255)
          tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTTTAAAAAATA‑GC‑t‑ttttttttttttt                                                                                                                         >  2:1896328/1‑128 (MQ=255)
           cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTATATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑t‑tttttttttttttt                                                                                                                        >  2:2702028/1‑128 (MQ=255)
           cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑t‑tttttttttttttt                                                                                                                        >  1:3935552/1‑128 (MQ=255)
                aTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTta                                                                                                                   >  1:2789971/1‑128 (MQ=255)
                 tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑t‑tttttttttttttttttata                                                                                                                  >  2:3620114/1‑125 (MQ=255)
                  ttttCGCACTTTTATTTAATAGTAATTAAATAAAAATATTATCTTTTTATATTTTTTTTTTATATGCAAA‑TTTTTAAAAAATTAATTTTAACTTTTAAAAAAAA‑GC‑t‑tttttttttttttttttatat                                                                                                                 <  1:3153638/125‑5 (MQ=255)
                   tATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATATTTTTATATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑t‑tttttttttttttttataatgg                                                                                                                <  2:949426/128‑8 (MQ=255)
                    aTCGCAGTTGTTTGAATTATTAATAAACAAAAACTAATATCTTTTTAGTAATTTTTTGTATATTGAAA‑TTTTTAAAAAATTAATTTGAACTTTTAAAAAAAA‑GC‑T‑TTTTTTTTTTTTTTTtataatgg                                                                                                               <  1:311809/128‑5 (MQ=255)
                     ttgCACTTGTTTGAATTATTAATAAAATAAAATTATTATCTTTTTTTTTATTTTTTTTATATGCAAA‑TTTTTTAAAAATTAATTTTAAATTTTAAAAAATT‑G‑‑G‑TTTTTTTTTTTTTTTTTTATAATgg                                                                                                             <  2:514181/126‑1 (MQ=255)
                      cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTTAACTTGTAAAAAATA‑GC‑t‑ttttttttttttttttaaaattaaa                                                                                                             >  1:505778/1‑119 (MQ=255)
                      cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAAttta                                                                                                            >  1:3359680/1‑125 (MQ=255)
                      cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCATATTAGATATTTATTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAATATA‑TC‑A‑TTTTTTATTTTATTATTTaaaagaa                                                                                                             >  1:765246/1‑125 (MQ=255)
                       gCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGTaa                                                                                                           >  2:2091051/1‑128 (MQ=255)
                          cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑TC‑‑‑TTTTTTTTTTTTTTTTTTATAATTTAAata                                                                                                        >  1:2060753/1‑128 (MQ=255)
                          cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACATGTAAAAAATA‑GC‑T‑TTTTTTATTTTTTTTTTTTTAATTTAAat                                                                                                         >  1:2201326/1‑128 (MQ=255)
                           ttttATTAATTATTTATAAAATAAAAATATTATATTTTTTTATATTTTTTTTATATTTAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑TC‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAata                                                                                                        <  1:881909/125‑1 (MQ=255)
                             gTATGAATTAGTAAGAAACTTAAACTATTATCTTTTTAGATATTTTATCTATAAGCAAA‑TTTATAAAAAATAAATTAGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTATATTAT‑‑TGGAAATATAAAt                                                                                                   >  2:2994503/1‑128 (MQ=255)
                                  tattattAAGAAAATAAAACTATTATTTTTTTAGTTAATTTTTGTTTATTTAAA‑TTTTTAAAAAATATATTTTAACATGTAAAAAAAA‑GCTT‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                                  <  1:2598896/127‑1 (MQ=255)
                                  aattttttaGAAAATAAAAATTTTTTCTTTTTTTATATTTTTTTTATTTTAAAA‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑‑T‑CTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑a                                                                                              <  2:1411919/120‑1 (MQ=255)
                                  aaTTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAAtttt                                                                                                >  1:3529887/1‑128 (MQ=255)
                                    ttAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTAATAATAAAAAAATAAATTTT‑a                                                                                              >  2:1016795/1‑128 (MQ=255)
                                     tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑TC‑T‑TTTTTTTTTTTTTTTT‑‑‑TAAAGGAAATATTAATTTT‑attta                                                                                          >  2:1632749/1‑124 (MQ=255)
                                     tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTTAATTGTAaattttaatttttg                                                                                              >  2:3822450/1‑126 (MQ=255)
                                     tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTT‑Ag                                                                                             >  1:3400921/1‑128 (MQ=255)
                                      ttttataaaataaaaattTTATATTTTTATATATTTTTTTTATATTTAAA‑TTTTTAAAAAATTAATTTTAACTTTTTAAAAATT‑TC‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑Agg                                                                                            <  1:1402320/122‑1 (MQ=255)
                                         aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTAAAATTTAAATAAAAATTTT‑attaatt                                                                                        >  1:1827511/1‑122 (MQ=255)
                                           taaaataaaactaTTTTTTTTTTAGATATTTTTTTTATATTTAAA‑TTTTTAAAAAATTAATTTTTACTTGTTAAAAATA‑TC‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTAtttt                                                                                      <  1:2261714/127‑1 (MQ=255)
                                           gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGAAAATAAAAAttttttttttttt                                                                                       >  2:2022328/1‑119 (MQ=255)
                                            aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTATAAATTAAAATATAAATTTT‑ATTTAtttt                                                                                      >  1:1647674/1‑128 (MQ=255)
                                               ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTT‑attttttttttt                                                                                   >  1:1130495/1‑117 (MQ=255)
                                               ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATTGAAATTAAAATTTT‑ATTTATtttttt                                                                                   >  1:3057586/1‑128 (MQ=255)
                                               aataaaataTTATATTTTTTTATATTTTTTTTATATTCAAA‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑TG‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTttgtt                                                                                   <  2:3159194/125‑1 (MQ=255)
                                                 aaatatattatATTTTTTTTTTTTTTTTTTTTATTTATA‑TTTTTAAAAAATTAATTTTAAATTTTTAAAAAT‑‑TT‑T‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTT‑AGGTATTTTGTTGTc                                                                                <  1:660199/123‑1 (MQ=255)
                                                 aaaattaTTATATTTTTATTTTTTTTTTGTTTATGCAAA‑TTTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑‑‑‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTa                                                                              <  2:2143886/128‑1 (MQ=255)
                                                 aaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTTTTttgtttta                                                                                >  1:3237350/1‑125 (MQ=255)
                                                  aaatttttttttttttATATTTTTTTTGTATATTCAAT‑TTTTTAAAAAATTAATTTGTTCTTTTAAAAAATA‑G‑‑‑‑ATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTa                                                                              <  1:1990062/117‑1 (MQ=255)
                                                   aactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTT‑AGGTATttttttttata                                                                              >  2:3094106/1‑123 (MQ=255)
                                                    actaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTT‑T‑ATGGAAATATAAATTTT‑ATGTATTTTTTTGTCTaat                                                                            >  1:3754941/1‑127 (MQ=255)
                                                    aatattatATTTTTTTATATTTTTTTTATTTTAATA‑TTTTTAAAAAATTAATTTTTAAATTTTAATAATT‑TC‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTaa                                                                             <  2:3879076/126‑1 (MQ=255)
                                                      tattatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTT‑AGTTAAtttttttaataag                                                                            >  1:3595158/1‑121 (MQ=255)
                                                              ttttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTT‑ATTTATTTTTTTTTATAATTAtaaaaa                                                                    >  1:231959/1‑123 (MQ=255)
                                                              ttttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTT‑AGGTTTTTTTTTTTATAATTATAT‑aaa                                                                   >  1:3821302/1‑128 (MQ=255)
                                                                ttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTT‑ATTTTTTTTTTTTTATAATTATaa‑aaaaaa                                                                >  2:72715/1‑128 (MQ=255)
                                                                  atttatTTTTTTTATATTTAAATTTTTAAAAAAATTATTTTTAA‑TTTTAAAAAATT‑TC‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAAt                                                              <  2:3767454/125‑1 (MQ=255)
                                                                  aGATATTTTTTGTTTATTCAAA‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGa                                                           <  1:1461200/128‑1 (MQ=255)
                                                                    atatTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTT‑‑‑TAATGGAAATATAAATTTT‑AGGTATTTTTTTGTATAAGTAACT‑AAAAAAATATaa                                                          >  2:278100/1‑128 (MQ=255)
                                                                     tatTTTTTTTTTTTTTAAT‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAA‑A‑AT‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGa                                                           <  2:1129691/128‑1 (MQ=255)
                                                                      atTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTT‑AGTTATTTTTTTGTATAATTATAT‑AAAAAAATATaaa                                                         >  1:1004419/1‑128 (MQ=255)
                                                                       ttttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGTTAAAATAAATTTA‑TGTTATTTTTTTTTATTATTATAT‑AAAAAAATATaaa                                                         >  1:2395063/1‑128 (MQ=255)
                                                                        tttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTAAAAAT‑TAAATATAAATTTT‑ATTTTTTTTTTTTTATAATTTTAA‑AAAAAAATAaaaat                                                        >  1:287507/1‑127 (MQ=255)
                                                                        tttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTT‑ATGTATTTTTTTTTATAATTATAA‑AAAAAAATAaaaat                                                        >  2:3467749/1‑127 (MQ=255)
                                                                         ttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTT‑‑TAATGGAAATAAAAATTTT‑AGTTATTTTTTTGTCTAATTAAAA‑AAAAAAATAAAAAGGa                                                      >  2:3278649/1‑128 (MQ=255)
                                                                          ttttttttttaaaa‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAAT‑‑‑T‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaa                                                     <  2:2354649/117‑1 (MQ=255)
                                                                           ttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TATTTTTTTTTTTTTTTTTTTAAAAGTAAAAATAAATTTT‑ATTTTTTTTTTTTTATAATTATAT‑aaaaaaaataaaatt                                                       >  2:1464619/1‑120 (MQ=255)
                                                                            tttatttttaaa‑TTTTTAAAAAATTTATTTTAAATTTTAAAAAATA‑‑T‑T‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaa                                                    <  1:24423/119‑1 (MQ=255)
                                                                            tGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATTGTAATATAAATTTT‑ATGTATTTTTTTTTAAAATTATGT‑AAAAAAAAATaaattaaa                                                    >  1:1349631/1‑123 (MQ=255)
                                                                             ttttatctaaa‑TTTTTAAA‑AATTACTATGTAATTGTAAATAATA‑TC‑C‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaaa                                                   <  2:1831171/120‑1 (MQ=255)
                                                                                 tttttaa‑TTTTTTAAAAATTTATTTTTAATTTTAAAAAATA‑TA‑T‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAat                                                <  1:3730119/123‑1 (MQ=255)
                                                                                 atGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTTTA‑AAT‑GAAAAATAAATTTTAAGTTATTTTTTTTAAAAATTATAT‑AAAAAAAAAAAATTAAAAAAATAtt                                             >  2:1559681/1‑128 (MQ=255)
                                                                                  tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTT‑TAATGGAAAATTAAATTTA‑TGTTTTTTTTTTTTAAAATTAAAA‑AAAAAAATAAAAAGTAAAAAatat                                              >  2:851565/1‑128 (MQ=255)
                                                                                    cAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTT‑‑‑TAATGTAAATATAAATTTT‑AGGTATTTTGTTTTATAAGTATAT‑AAAAAAATATAAAGGAAAAAATATTGtt                                          >  1:3454577/1‑128 (MQ=255)
                                                                                     aaa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTT‑TAATTTAAAAAAAAATTTT‑TTTTTTTTTTTTTTAAAATTAAAT‑AAAAAAAAAAAAATAAAAAAAAAtttt                                           >  2:2217854/1‑126 (MQ=255)
                                                                                     aaa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGAAAATTAAAATTTT‑ATTTATTTTTTTTTATAATTATAT‑AAAAAAATAAAAAGAAAAAAATAtttt                                           >  2:1279003/1‑126 (MQ=255)
                                                                                     aaa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTTTAAAATTAAAATATAAATTTT‑ATTTATTTTTATGTATAATAATATAAAAAAAATAaaaaaaaaaaaaatattt                                           >  2:320040/1‑122 (MQ=255)
                                                                                       a‑TTTTTTAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑‑TTTTTATTTTTTTTTTATAATTATAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTTACT‑AAAATAATATATAGAAAAAAATTTTGtttta                                       >  2:2599279/1‑125 (MQ=255)
                                                                                         ttttAAAA‑AATTAATTTTAAATTTTAAAAAAT‑‑TT‑A‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTaaa                                       <  1:944232/128‑1 (MQ=255)
                                                                                            ttaaaaaaTTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTT‑‑‑‑TAATGGAAATAAAAATTTT‑AATTTTTTTTTTTATAAAATAAAA‑AAAAAAAAATAAAATAAAAAATATTTTTAAAATTaa                                  >  2:3345190/3‑128 (MQ=255)
                                                                                             taaaaaaTTAATTTGAACTTGTAAAAAATA‑G‑‑G‑TTTTTTTTTTTTTTTTTTA‑AATGTAAATAAAAATTTT‑ATGTAATTAGTTATTTAATTAAAA‑AAAAAAATAAAAATGAAAAAatatattaaaaaatt                                   >  2:2469125/2‑117 (MQ=255)
                                                                                               aaaaattaattTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTT‑TAATGTAATTTAAATTTTT‑TGTTTTTTTTTTTTATATTTTTAT‑AAAAAAATTTAAATTATAAAATTTTTTTaaatttat                                  >  1:2480902/4‑123 (MQ=255)
                                                                                                aaaatttattTTTAATTTTAAAAAATATTT‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTa                                   <  2:367671/126‑1 (MQ=255)
                                                                                                  aattaattTTTAATTTTAAAAAATT‑TT‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                                <  2:3713798/128‑1 (MQ=255)
                                                                                                   attaattTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTT‑‑‑TAATTTAAATTAAAATTTT‑ATTTTTTTTTTTTTATAATTTAAT‑AAAAAAATATAAATTAAAAAATTTTTTTaaaatatataataa                            >  1:1210819/1‑118 (MQ=255)
                                                                                                   attaattTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTT‑AGTTTTTTTGTTTTATAATTAAAT‑AAAAAAATATAAAGTAAAAAATTTTTTTTAAAGTAATaat                              >  2:1340664/1‑126 (MQ=255)
                                                                                                   attaattTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAATTATAAATTTT‑AGGTTTTTTGTTGTATAAGTTTAT‑AAAAAAATATAAATGAAAAAATATTTTTAAAATTAATACTa                             >  1:2640902/1‑128 (MQ=255)
                                                                                                    ttaattTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTT‑AGTTATTTTGTTGTCTAATTTTAT‑AAAAAAATATAAATGAAAAAATATTTTTAAAATTAATaaa                              >  1:1504637/1‑126 (MQ=255)
                                                                                                    ttaattTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑ATGTATTTTTTTGTCTAAGTATAT‑AAAAAAATAGAAAGTAAAAAATATTGTTAAAATTTATACTat                            >  1:1585215/1‑127 (MQ=255)
                                                                                                     ttattttatattGTAAAAAATA‑G‑‑G‑TTTTTTTTTTTTTTTTATATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTaa                            <  2:3538196/118‑1 (MQ=255)
                                                                                                       ttttttaattttAAAAAATA‑‑T‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTaaaa                          <  1:3292256/117‑1 (MQ=255)
                                                                                                         ttGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTAAAATGTAAATAAAATTTTT‑AGGTATTTTGTTTTCTATTTATAT‑AAAAAAATTGAAAGGAAAAAATATTTTTAAAATTATAAATAAAatt                        >  1:2533819/1‑128 (MQ=255)
                                                                                                          tGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTAAAATGTAAATTAAAATTTT‑AGTTTTTTTTTTTTAAAATTAAAA‑AAAAAAAAAAAATGAAAAAAAAATTTTTAAAATTAAAAAAAAAattt                       >  2:64484/1‑127 (MQ=255)
                                                                                                             aattGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑TGGTTTTTTTTTGTATTATTTTAT‑AAAAAAAATAAAAGTAAAAAAATTTTTTTAATTTAATAAAAAAAtttttt                    >  1:3659653/3‑128 (MQ=255)
                                                                                                              cTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTT‑TATTTGAAATAAAAATTTT‑AGGTTTTTTTTTTTCAATTTATAA‑AAAAAAAAAAAAAGGAAAAAATATTTTTAAAAATAATAAAAAAATTATTTa                   >  2:443098/1‑128 (MQ=255)
                                                                                                              cTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTTTATAAGTATAT‑AAAAAAATAGAAATGAAAAAATTTTTTTTAAATTAATAATAAAATTTTTTa                   >  1:2961168/1‑128 (MQ=255)
                                                                                                              cTTGTAAAAAATA‑GC‑‑‑CTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTTTTTTGTAAGTTTAT‑AAAAAAATAGATAGGAAAAAATTTTTTTAAAATTAATATTAAAATTATTTa                   >  1:827016/1‑128 (MQ=255)
                                                                                                               ttGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAATTATAAATTTT‑TGTTTTTTTGTTGTATAAGTTTAT‑AAAAAAATTAAAAGTAAAAAATATTTTTAAATTTATTAATAAATTTTTTTaa                  >  1:273667/1‑128 (MQ=255)
                                                                                                                 gTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTT‑TGTTTTTTTTTTTTATATTTATAA‑AAAAAAAAAAAAAGTAAAAAATTTTTTTAAAATAAAAAAAAAAATTTTTTAAtt                >  2:1083180/1‑127 (MQ=255)
                                                                                                                  tAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTT‑AGGTATTTTGTTGTATAATTATTT‑AAAAAAATAGAAAGTAAAAAATATTGTTAAATGTAATAATAAAATTATTTAATGt               >  1:580357/1‑128 (MQ=255)
                                                                                                                   ttttaaaattttt‑ttttttttttttttttttATAATTTAAATATAAATTTT‑AGTTATTTTTTTGTCTAAGTATCT‑AAAAAAATAGAAAGTAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt                 <  1:1922536/116‑1 (MQ=255)
                                                                                                                     taatataattt‑ttttttttttttttttttATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGt               <  2:1719919/118‑1 (MQ=255)
                                                                                                                     aaaaTA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTT‑AGTTATTTTTTTGTCTAATTATTT‑AAAAAAATAAAAATAAAAAAATTTTTTTAAAATTAATAGTAAATTTTTTTAATTtta             >  1:174195/1‑128 (MQ=255)
                                                                                                                       aaatttttt‑ttttttttttttttttttATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtta             <  2:1209090/120‑1 (MQ=255)
                                                                                                                       aaaaaatgt‑ttttttttttttttttttATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtta             <  2:3424589/120‑1 (MQ=255)
                                                                                                                         tA‑GC‑T‑TTTTTTTTTTTTTTTTTAATAATAAAAAAAAAAATTTT‑TGGTATTATTTTTTATAAGAATAT‑AAAAAAATAGAAAATAAAAAAAATTTGTAAAAGATATAATAAATTTATTTAAttaataatt         >  2:2885772/1‑120 (MQ=255)
                                                                                                                         aaaatatattttttttttttttttttATAATGGAAATATAAATTAT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaa            <  1:2109739/120‑1 (MQ=255)
                                                                                                                           atttttatttttttttttttttttATATTGTATATATAAATTTT‑ATGTATTTTGTTTTCTAAGTATCT‑ATAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatt          <  2:304823/121‑1 (MQ=255)
                                                                                                                                   ttttttttttttttttATAAGTGAAAAAAAAATTTT‑AGTTATTTTTTTGTATAATAATGT‑AAAAAATTATAAAGTAAAAAATATTTTTAAATTTAATACAAAAAATATTTATTTTTAATTaaaaaata  >  1:1269062/1‑124 (MQ=255)
                                                                                                                                   |                                                                                                                                 
ATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATA‑GC‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTT‑AGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTA  >  CP016816/165126‑165380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.