New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 165253 =1127 (0.620)148 (0.090) 69/220 50.1 13.5% intergenic (+217/‑325) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
?CP016816 = 165249 920 (0.580)intergenic (+213/‑329) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1184 total aligned reads displayed.

GATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAA  >  CP016816/165122‑165376
                                                                                                                                   |                                                                                                                                   
  taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTTAACTTGTAAAAAATA‑G‑C‑‑tt                                                                                                                                 >  2:1676744/1‑128 (MQ=255)
  taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑tt                                                                                                                                 >  1:1352754/1‑128 (MQ=255)
   aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑ttt                                                                                                                                >  1:228357/1‑128 (MQ=255)
       tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAA‑A‑G‑C‑‑tatttttt                                                                                                                           <  2:2024861/128‑1 (MQ=255)
        ttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑tttttttt                                                                                                                           >  2:2359496/1‑128 (MQ=255)
           ttttCAATAATTTATCGCAATTGTATGAATTACTAATAAAATAAAACTATTATATTTTTATATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTTAACTTGTAAAAAAAA‑G‑C‑‑ttttttttttt                                                                                                                        <  1:3741871/127‑1 (MQ=255)
           gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑T‑C‑‑ttttttttttt                                                                                                                        >  1:2633147/1‑128 (MQ=255)
           gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑ttttttttttt                                                                                                                        >  1:3428749/1‑128 (MQ=255)
            tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑tttttttttttt                                                                                                                       >  2:3292256/1‑128 (MQ=255)
                aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑tttttttttttttttt                                                                                                                   >  1:856916/1‑128 (MQ=255)
                     tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑tttttttttttttttttttta                                                                                                              >  2:1610945/1‑126 (MQ=255)
                      ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTtat‑a                                                                                                            >  2:2798218/1‑128 (MQ=255)
                        aTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTtatttt                                                                                                           >  1:3702248/1‑125 (MQ=255)
                        aTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AAtt                                                                                                         >  1:1403551/1‑127 (MQ=255)
                         tctcattagTATGAAATATTAATAAAAAAAAAATATTATTTTTTTATTTATTTTTTTTTTATGAAAA‑TTTTTTAAAAATTAA‑TTTTAACTTTTAAAAAATA‑‑‑‑‑‑TCTTTTTTTTTTTTTTTTTAT‑AATGGa                                                                                                       <  1:1143476/120‑1 (MQ=255)
                          ttacattttattaattattaatAAAATAAAAATTTTTTTTTTTTTTTTATTTTTTTTATATTCAAA‑TTTTTTAAAAATTAA‑TTTTTAATTTTAAAAAAAA‑T‑C‑‑TTTTTTTTTTTTTTTTTTTTT‑AATgg                                                                                                        <  2:3444083/120‑1 (MQ=255)
                           tcaattGTATTAATTTTTAAGAAAATAAAAATTTTATATTTTTATATATTTTTTGTTTATTAAAA‑TTTTTAAAAAATTAA‑TTTTAAATTGTAAAAAATA‑‑‑‑‑‑TCTTTTTTTTTTTTTTTTTAT‑AATGGaaa                                                                                                     <  2:1062791/124‑1 (MQ=255)
                           gtatttgtttttattattAATTAAATAAAAATATTATTTTTTTTTATATTTTTTTTATATTTAAA‑TTTTTAAAAAATTTA‑TTTTTAATTTTAAAAAATA‑‑‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGaa                                                                                                      <  2:2420847/116‑1 (MQ=255)
                            tatttttatttattattAAAAAAATAAAAATATTTTTTTTTTTTATATTTTTTTTATATTTAAA‑TTTTTAAAAAATTAA‑TTTTAAATTTTAAAAAAT‑‑T‑T‑‑GTTTTTTTTTTTTTTTTTTAT‑AATGGaaa                                                                                                     <  2:1517357/117‑1 (MQ=255)
                              cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑T‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATTTAAata                                                                                                   >  1:2060753/1‑128 (MQ=255)
                              cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑tttttattttttttttttaaattgaatatt                                                                                                     >  2:492524/1‑116 (MQ=255)
                              cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGAAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTT‑T‑AATGAAtata                                                                                                   >  2:1323226/1‑128 (MQ=255)
                               ttGTATGGATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑tttttttttttttttttttttttaatgtaaa                                                                                                    >  2:3656701/1‑116 (MQ=255)
                               ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTATTTTATTTTTTTAT‑AAT‑GAAataaa                                                                                                 >  1:253242/1‑126 (MQ=255)
                                tGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTataat‑atataaaaaat                                                                                                  >  1:2402900/1‑118 (MQ=255)
                                  tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AAtttaaaaaaaaa                                                                                               >  1:631401/1‑117 (MQ=255)
                                   ttttattattAATAAAATAAAAATATTATATTTTTATTTTTTTTTTTTTTTTGTAAA‑TTTTTAAAAAATTAA‑TTTTAAATTTTAAAAAATT‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAAtt                                                                                             <  1:1821015/124‑1 (MQ=255)
                                   aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTATTTTTTTTTTAT‑ATTGTAAaaataaat                                                                                              >  2:3099548/1‑128 (MQ=255)
                                    tttattattAATAAAAAAAAAATATTATCTTTTTTTTTATTTTTTTTTTATTTAAA‑TTTTTTAAAAATTAA‑TTTTAAATTTTTAAAAAAA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAAtt                                                                                             <  1:1574427/125‑1 (MQ=255)
                                    ttaaTTATTAAGTAAAAAAAACTATTATTTTTTTATTTATTTTTTTTTTATTAAAT‑TTTTTTAAAAATTAA‑TTTTAACTTGTTAAAAATATT‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATaaa                                                                                               <  1:3278630/126‑1 (MQ=255)
                                    tGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAA‑AATTAAAaaataaat                                                                                              >  1:28710/1‑128 (MQ=255)
                                     ttattattAAGTAAATAAAAATATTTTCTTTTTTGATATTTTTTTTTTATTCAAA‑TTTTTAAAAAATTTA‑TTTTAAATTTTAAAAAATA‑T‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAAtt                                                                                             <  1:2586116/126‑1 (MQ=255)
                                      aaTTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTAAA‑AATTAAAAAATAAAttt                                                                                            >  2:1899673/1‑128 (MQ=255)
                                       aTTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑ATAGTAAATAAAAAtttt                                                                                           >  2:2481426/1‑128 (MQ=255)
                                        ttAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATTAAAAAATAAAttttttt                                                                                        >  2:3707688/1‑125 (MQ=255)
                                        ttAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAAATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATTGAAATATAAATTTTAgt                                                                                        >  1:2212018/1‑127 (MQ=255)
                                         tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑CTTTTTTTTTTTTTTTTTTTTTAT‑AATGTAATTAAAAAtttt                                                                                           >  1:379922/1‑128 (MQ=255)
                                         tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATTAAAATATAAATTTTAgt                                                                                        >  1:3339342/1‑127 (MQ=255)
                                           ttaaataaataaaacttTTATTTTTTTTTTTAATTTTTGTTTATTCAAA‑TTTTTAAAAAATTAA‑TTTTAAATTTTAAAAAAAT‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTa                                                                                      <  2:3855172/119‑1 (MQ=255)
                                             aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAA‑AATTAAAATAAAAATTTTAgtaatt                                                                                    >  2:1861658/1‑123 (MQ=255)
                                             aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATTGAAATATAAATTTTAGTTAttt                                                                                   >  1:3624151/1‑128 (MQ=255)
                                               ttatataaaaataTTTTTTTTTTTTATATTTTTTTTATATTTAAA‑TTTTTTAAAAATTAA‑TTTTTAATTTTAAAAAATA‑T‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTAtttt                                                                                  <  1:1285489/123‑1 (MQ=255)
                                                 aaattaaaataTTATATTTTTTTTTTTTTTTTTTTTATTAAAA‑TTTTTTAAAAATTAA‑TTTTTTATTTTAAAAAATA‑T‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTttgt                                                                                <  1:1736262/123‑1 (MQ=16)
                                                  aaataaaataTTATTTTTTTTTTTTTTTTTTTTTTTTTCAAA‑TTTTTTAAAAATTAATTTTTAATTTTTAAAAAAT‑‑T‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTttgt                                                                                <  2:3068177/124‑1 (MQ=255)
                                                    taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTTTAAATTTAAATAAAAATTTTattttttttttt                                                                               >  1:1209090/1‑117 (MQ=255)
                                                         ctaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAA‑AATTGAAATATAAATTTTATGTATTTTTTTTTATAAg                                                                        >  1:1647263/1‑128 (MQ=255)
                                                         catttatCTTTTTATATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTTAAATTTTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGt                                                                       <  2:3947983/125‑1 (MQ=255)
                                                         atattatTTTTTTATTTTTTTTTTTTATATTCAAA‑TTTTTAAAAAATTAA‑TTTGAAATTTTTAAAAATA‑T‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                         <  2:3819015/127‑1 (MQ=255)
                                                          ttttttCTTTTTATATATTTTTTTTATTAGCAAA‑TTTTTTAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑CT‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                         <  1:2966944/123‑1 (MQ=255)
                                                          tattatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAA‑AATTAAAATATAAATTTTATTTATTTTTTTGTATaatt                                                                       >  1:740158/1‑126 (MQ=255)
                                                            ttatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAA‑AATTAAAAAAAAAATTTTTGTTATttttttttatatttata                                                                    >  1:1042856/1‑117 (MQ=255)
                                                             tatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑ATTGTAAATATAATTTTTAGTTATTTTTTTTTATAAGTAt                                                                     >  2:3166051/1‑128 (MQ=255)
                                                             tatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTT‑T‑ATTGTATTTATAAGTTTTTTTTATTTTTTTTTATAAgaaaa                                                                    >  2:1186091/1‑124 (MQ=255)
                                                              atCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTATTGTATATGTAtat                                                                   >  2:3009043/1‑126 (MQ=255)
                                                                   tttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAA‑AATTTAAATTTAAATTTTATTAATTTTTTTTTATAATTATAa‑aaaaa                                                             >  1:918679/1‑128 (MQ=255)
                                                                     tAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑ATTTTAAATATAATTTTTATGTATTTTTTTTTATAATTATAT‑aaaaaaa                                                           >  1:545491/1‑128 (MQ=255)
                                                                      ttttatTTTTTTTATTTATAAATTTTTAAAATAATTAA‑TTTTTA‑TTTTTAAAAAT‑‑‑‑‑‑‑TTTATTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAg                                                        <  1:3487631/125‑1 (MQ=255)
                                                                      aGATATTTTTTGTTTATTCAAA‑TTTTTAAAAAATTAA‑TTTTTAATTTTAAAAAATA‑‑‑‑‑‑‑‑TCTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGa                                                       <  1:1461200/128‑1 (MQ=255)
                                                                       gATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATTTAAATATAAATTTTAGTTATTTTTTTTTATAAGTATAT‑aaaaaaaaaa                                                        >  1:3389532/1‑125 (MQ=255)
                                                                        atatTTTTTTTTTATTCAAA‑TTTTTTAAAAATTAA‑TTTTTAATTTTTAAAAATA‑‑‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAg                                                        <  1:1897212/128‑1 (MQ=255)
                                                                         tatTTTTTTTATTTTAAAA‑TTTTTAAAAATATAA‑TTTTAACTTTTAAAAAAAT‑G‑‑‑‑‑GTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGaa                                                      <  1:2014065/128‑1 (MQ=255)
                                                                          atTTTTTGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATTTAAATATAAATTTTAGTTATTTTTTTGTATAATTATAT‑AAAAAAATATaaa                                                     >  1:1004419/1‑128 (MQ=255)
                                                                           ttttttttttATTAAAA‑TTTTTAAAAAATTAA‑TTTTTATTTTTAAAAAATA‑GAT‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGa                                                       <  1:3225559/128‑1 (MQ=255)
                                                                           ttttttGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTT‑T‑ATTGTAAATATAAATTTATTGTATTTTGTTGTCAAATTATAT‑AAAAAAATATaaa                                                     >  2:2095970/1‑128 (MQ=255)
                                                                             ttttttttttttaaa‑TTTTTTAAAAATTTA‑TTTTTAATTTTAAAAAATA‑T‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAg                                                    <  1:979930/116‑1 (MQ=255)
                                                                             ttttGTATATGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAA‑AATGTAAATAAAAATTTTATGTATTTTTTTTTAAAATTTTAA‑AAAAAAATATaaatt                                                   >  2:2942791/1‑126 (MQ=255)
                                                                               tttttatttaaaa‑TTTTAAAAAAATAAT‑ATTTAATTTTTAATAAAT‑‑‑‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATTGATATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaa                                                <  2:1393024/118‑1 (MQ=255)
                                                                                tttatttttaaa‑TTTTTAAAAAATTTA‑TTTTAAATTTTAAAAAATA‑‑‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaa                                                <  1:24423/119‑1 (MQ=255)
                                                                                tactatttaaaa‑TTTTTAAAAAATTAA‑TTTTTATTTTTAAAAAATA‑‑‑‑‑‑TCTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaaa                                               <  2:2149480/119‑1 (MQ=255)
                                                                                 ttataTTTAAA‑TTTTTATAAAATTTA‑TTTTTAATTTTTAAAAATA‑T‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaa                                                <  2:1265482/127‑1 (MQ=255)
                                                                                  ttttttaaaa‑TTTTTAAAAAATTTT‑TTTTTAATTTTAAAAAAT‑‑T‑T‑‑TTTTTTTTTTTTTTTTTTTTT‑ATTTTAAATTTAATTTTTTGTTTTTTTTTTTTTTATTTATAT‑AAAAAAATATAAAGTaaaaa                                              <  2:585635/121‑1 (MQ=255)
                                                                                  tataTGATAA‑TTTTTAAAAAATTAA‑ATTTAAATTTTTAAAAATA‑T‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaaaa                                              <  2:3485150/128‑1 (MQ=255)
                                                                                    ttttaaaa‑TTTTTAAAAAATTTA‑TTTTAAATTTTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAat                                            <  2:3370859/123‑1 (MQ=255)
                                                                                    tatttata‑TTTTTAAAAAATTAT‑TTTTAAATTTTAAAAAATA‑‑‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAat                                            <  1:464833/121‑1 (MQ=255)
                                                                                    tatGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATGGAATTATAAATTTTAGTTATTTTTTTGTCTAAGTATAT‑AAAAAAATATAAATGAAAAAata                                           >  1:2781142/1‑128 (MQ=255)
                                                                                     attcAAA‑TTTTTTAAAAATTAA‑TTTTAAATTTTAAAAAATA‑T‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAat                                            <  2:3747340/125‑1 (MQ=255)
                                                                                     atGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGAAATTATAAATTTTAGGTTTTTTGTTAAATAAGTATCA‑AAAAAAATAGAAAGTaaataaat                                           >  1:2126754/1‑126 (MQ=255)
                                                                                      tGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGTAAATATAAATTTTTTTTTTTTTTTTTTATAATTTAAT‑AAAAAAAAATAAATTaaaaaaatt                                          >  2:1792654/1‑125 (MQ=255)
                                                                                      tGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTAAT‑AATGTAAATAAAAATTTAATTAATTTTTTTATATAATTATAA‑AAAAAATTATAAATAAAAAAatat                                          >  1:3556603/1‑128 (MQ=255)
                                                                                      tGCAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAAAA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTA‑‑AATGTAATTTAAAAATTTATTTATTTATTTGTAAATATAAAA‑AAAAAAAAAAAATGTAAAAAataa                                          >  2:6999/1‑127 (MQ=255)
                                                                                        cAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑TATTAAAATAAAAATTTTAGTTATTTTGTTGTAAAATAAAAA‑AAAAAAAAAAAATGGAAAAAATAttt                                        >  2:824850/1‑127 (MQ=255)
                                                                                        cAAA‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTATTTATTTTTTTTTAAATTTATAT‑‑AAAAAATATAAATGAAAAAATATtttt                                      >  1:233884/1‑128 (MQ=255)
                                                                                         aaa‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAA‑AATTAAAATATAAATTTTATTTATTTTTATGTATAATAATATAAAAAAAATAaaaaaaaaaaaaatattt                                       >  2:320040/1‑122 (MQ=255)
                                                                                           a‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AAT‑TTATTATAAATTTTTATTAATTTTTTTTTAAATTTTTA‑AAAAAAATTAAAATAAAAAAAAATTTTTaa                                    >  1:2707784/1‑128 (MQ=255)
                                                                                           a‑TTTTTAAAAAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑‑‑TTTTTTTTTTTTTTTTTAT‑AATGTAAATATAAATTTTTGTTTTTTTTTTTTATAATTATAT‑AAAAAAATAAAAAGGAAAAATTTTTTTTaa                                    >  2:1111022/1‑128 (MQ=255)
                                                                                             ttttAAAA‑AATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATTTAAATATAAATTTTATGTTTTTTTTTTTATAATTTTTT‑AAAAAAATATAAATTAAAAAATTTTTTTaa                                    >  1:810175/1‑128 (MQ=255)
                                                                                              tttAAAA‑AATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAAAATAAATTTTATGTATTTTTTTGTAAAATTATAT‑AAAAAAATAAAAATAAAAAAATTTTTTTaaa                                   >  2:2222792/1‑128 (MQ=255)
                                                                                                 taaaaaaTAAA‑TTTAAATTTTTAAAAAA‑A‑T‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTa                               <  1:3144253/127‑1 (MQ=255)
                                                                                                   aaaaattaa‑ttTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTT‑T‑AATGTAATTTAAATTTTTTGTTTTTTTTTTTTATATTTTTAT‑AAAAAAATTTAAATTATAAAATTTTTTTaaatttat                              >  1:2480902/4‑123 (MQ=255)
                                                                                                   aaaaaataa‑ttTTTACTTTTAAAAAATA‑T‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTa                               <  1:3060253/122‑1 (MQ=255)
                                                                                                    taaattta‑ttTTAAATTTTAAAAAATATT‑A‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTa                               <  1:3112423/126‑1 (MQ=255)
                                                                                                     aaattaa‑ttTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTTA‑ATTGGAAATATAATTTTTAGTTTTTTTTTTGTTTATTTATAT‑AAAAAAATTTAAATGAAAAAATTTTTTTAAAATTAAt                             >  1:3973104/2‑128 (MQ=255)
                                                                                                      aattaa‑ttTGAACTTGTAAAAAATA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAA‑AATGAAAATATAAATTTTAGTTATTTTTTTTTCTAATTATAT‑AAAAAAATAGAAAGGAAAAAATATTTTTAAAATTaaaaa                           >  2:1436503/1‑125 (MQ=255)
                                                                                                       attaa‑ttTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGTAAATATAAATTTTAGGTTTTTTGTTGTATAATTATAT‑AAAAAAATATAAATGAAAAAATTTTTTTAAAATTAATaa                           >  1:3859103/1‑127 (MQ=255)
                                                                                                         taa‑ttTGAACTTGTAAAAAATA‑G‑CT‑TTTTTTTTTTTTTTTTTTTAT‑AATTTAAATAAAATTTTTATTATTTTTTTTTTATAATTATTA‑AAAAAAATAAAAATTAAAAAATATTTTTAAAATTaaaaaa                          >  2:937946/1‑124 (MQ=255)
                                                                                                           a‑ttTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAA‑AATGAAAAATAAAATTTTATTTTTTTTTTTTAAAAATTAAAA‑AAAAAAATAAAAATTAAAAAA‑ATTTTTaaaataaaataaaaaa                      >  2:275237/1‑116 (MQ=255)
                                                                                                             ttttaaaattttaaaaaTA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAat                     <  2:419461/116‑1 (MQ=255)
                                                                                                                   attttAAAAAATT‑T‑T‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                <  2:2662333/124‑1 (MQ=255)
                                                                                                                             aTA‑G‑C‑‑‑TTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTATAATTATAT‑AAAAAAATATAAAGTAAAAAATATTTTTAAAATTAATAATAAAATTATTTAATGttaaata     >  1:1501525/1‑128 (MQ=255)
                                                                                                                              tA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAA‑AATGGAAATATAAATTTTAGTTATTTTTTTGTATAATTATAT‑AAAAAAATATAAAGAAAAAAATTTTTTTAAAATTAATAAAAAAATTATTTAATTtaaatta     >  2:3585355/1‑128 (MQ=255)
                                                                                                                                   |                                                                                                                                   
GATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAA‑TTTGAACTTGTAAAAAATA‑G‑C‑‑TTTTTTTTTTTTTTTTTTTAT‑AATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAA  >  CP016816/165122‑165376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.