| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 437908 | 405 (0.260) | 404 (0.270) +ATAA |
66/244 | 26.9 | 50.7% | intergenic (‑212/+210) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437909 = | 405 (0.260) | intergenic (‑213/+209) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 448 total aligned reads displayed.
ATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP016816/437782‑437908‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTT > CP016816/437909‑438029 ||||||||| ATTTTTTATAAATATTATAAATAAAAATTTTATTTTTAAAATATATATTTTATTAAAAGAATCAAATCAAAAACCTCCATAAAAACTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATA < 2:2281659/128‑1 TTTTTATAAATATTAGAAATAAAAATATTATTTTTAAAATAAATATTTTAGTAAATGTAGCAAAGCAAAAACCTCAATATTACCTATAGAGATAATT‑‑ATATATATA‑‑TATATATATATATATATATATA < 2:3045011/128‑1 ttATAAATATTAGATATAAAAATTGTATTTTTAAAATATATAATTTAGGATAAGAAGCAAACCAAAAACCTCCATATTAACTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATgcaa < 1:1383175/126‑5 TAATAAATATTAGAAATAAAAATTGTATTTTAAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATgcaa > 2:2705088/1‑124 AATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCA > 1:784947/1‑128 AATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TAAATATATATATATATATATA‑‑‑A‑‑GCTAGCt > 2:1271025/1‑127 AATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATAtgaacgag > 1:2949263/1‑120 AATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGAT > 1:2246580/1‑128 TATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAATCAAACCAAAAACCTCCATATTACCTATAGAGATAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGAT < 2:552696/128‑1 TTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCTAGAGATCA > 2:916575/1‑128 TTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCA > 2:1919548/1‑128 TTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGC > 2:1801530/1‑128 TAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATC‑‑‑T‑‑GCAAGCGATCAG > 1:3051370/1‑128 atAAATAAAAATTTTATTTTTAAAATAAATATTTTAGTAAAAGAAGAAAAGCAAAAAACTCCATATTACATATATAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGC < 1:1833162/126‑1 AATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATTAAGAAAAGAAAAAACATCAATATTAACTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAA < 1:300598/128‑1 ATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATTATGAAAATCAAAAACCTCCATATTAACTATAGAGTTTATT‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAA < 2:1666579/128‑1 ATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑TCAATCTCTCAGCATAA > 1:1001698/1‑128 TAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCTAGATATCAGCATAAA > 2:24633/1‑128 TAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑TCAAGCTATCAAAATAAAAT > 1:2551392/1‑128 AAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCTATCAGAATAAAA > 2:346489/1‑128 AAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑AATCCAATCGATCAGCAAAA > 1:1905187/1‑128 AAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATt > 2:293775/1‑127 AAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGG < 1:1942039/128‑1 AAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCTCTAAGCATATAAT > 1:71090/1‑128 AAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GAAAGAGATCAGAATAAAATG > 2:2862332/1‑128 ttTATTTTTAAAATAAATATTTTATGAAATGAATCAAATCAAAAAACTCCATATTAAATATAGAGTTAAAG‑‑ATATATATA‑‑TATATATATATATATATATATAT‑‑AT‑GCAAGCGATCAGCATAAAATGGT < 1:645876/126‑1 TGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGA > 1:2827486/1‑128 tTTTTTATAATAAATATTTTATTATATGAATCAAAACAAAAAACTCTATATTATATATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAAT < 2:619482/127‑1 ATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCATCATAAAATGGTGAAAT > 1:1415851/1‑128 TTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATGATATATATATA‑‑TATATATATATATATATATATA‑‑‑A‑‑TCACTATATCAGCATAAAATGGAGATAT > 1:2149372/1‑128 TTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATT‑‑‑A‑‑‑‑AAGAGCTCAAAATAATATTGTGAAATATAG > 2:2185329/1‑128 TTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑A‑‑GCGAGCGATCAGCAAAATAGGGTGATATATA > 2:1377276/1‑128 TAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑TATAGCGATCAGCATAAAATTGTGATATTTAta > 1:2464723/1‑126 TAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGAGCAGAATAAAATTTTGAAATTTAGA > 2:699588/1‑128 TAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GAAAGATATCAAAATAAAATGGTTAAATTTAGA > 2:1873361/1‑128 TAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATC > 2:3080367/1‑128 AAATAAAAATTTTATGATATGAATCAAATCAAAAAACTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATC < 2:2612931/128‑1 AAAAAAATATTTTAGTAAATTAATAAAAGAAAAAACCTCAATATTATCTATAGAGTTAATT‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATC < 2:783478/128‑1 atattTATTTTATGAAATGAATCAAAGATAAAAACTATATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTG < 2:1325542/123‑1 ATAAATATTTTAGGAAATGAAGCAAATCAAATAGATATATATTACCTATAGAGTTTATG‑‑TTTTATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTG < 2:1407570/128‑1 tatATATTTTATGATAATAAGCTAAGAAAAAACCTCCATATTACATATAGAGTTATTG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGTTCTGAGT < 2:1040088/125‑1 ATATTTTATTAAATGAAGCAAAGAAAAAACCTACATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATAT‑‑AT‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAG < 2:2555982/128‑1 ATATTTTAGTTAATGAATCAAATAAAAAACATCAATATTAACTATAGAGATAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTT < 2:419228/128‑1 ATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GAAATAGATCAGCATAATATTGTGAAATATATATCTGAGTT > 1:2510468/1‑128 ATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GTAAGCGATCATCATAAAATGGTGAAATTTAGATCTGAGTTGG > 1:1484965/1‑128 ttttgtAAATCAAGCAAAGAAAAAACCTCCATATAACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTT < 1:1286336/122‑1 TTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGATATTTATATCTGAGTTGTTC > 2:148897/1‑128 TTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GAAAGCGATCAGCATAAAATTGTGATATTTATATCTGAGTTGGTC > 1:3234290/1‑128 TTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGAACATCATAAAATGGTGAAATATATATCTGATTTTGTCTT > 1:164024/1‑128 TTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GAAAGCGATCAGCATAAAATTGTGATATTTAGATCTGAGTTTGTCTg > 1:2619914/1‑127 TTAGGAAATGAAGCAAAGCAAAAACCTCCATATTTACTATTGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GAAAGATATCAGAATAAATTGGTGAAATTTAGATCTGAGTTGTTCT > 2:1160171/1‑128 tattAAATGAAGCAAAGAAAAAACCTCCATATTAACTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAA < 1:17984/124‑1 TAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCTATCAGAATAAAATTGTTATATTTATATCTGAGTTTGTATT > 1:2767688/1‑128 TAGGAAATGAAGAAAAGCAAAAACCTCCATATTAACTATAGAGATAATT‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTT < 1:346489/128‑1 AGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGATATCATCATAAAATGGTTAAATTTAGATCTGAGTTTGTCTTAta > 2:1954472/1‑126 ttaaatatAGCAAACCAAAAAACTCCATATTAACTATATAGTTAATG‑‑ATATATATATTTATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTT < 2:1464935/120‑1 gatATGACGCAAAGCAAAAACCTCGATATTAACTATAGAGTTATAG‑‑ATATATATA‑‑TATATATATATATATATATATAT‑‑AT‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTA < 1:2318495/125‑1 aAAATGAATCAAATCAAAAAACTCAATATTAAATATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATT < 1:1050481/127‑1 ATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCTTAATATTGTGAAATTTATATCTGAGTTTGTCTTAAATTT > 2:3263695/1‑128 ATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAATATGGTGAAATTTAGATCTGAGTTGGTGTTATATTT > 1:1162266/1‑128 ATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TAAATATATATATATATATATA‑‑‑T‑‑GAAAGCGATCATCATAAAATAGTGATATTTATATCTGAGTTGGTATTATATTT > 2:1615376/1‑128 agaacaAAACCAAAAAACTACAAATTAACTATAGAGTTATTT‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTG < 2:738482/122‑1 AGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GAAAGCTATCATAATAAAATTGTGAAATTTATATCAGAGTTTGTATTATATTTTTAt > 1:2010641/1‑127 GCAAAGCAAAAACCTCTATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATATATAT‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTG < 2:1577447/128‑1 aatCAAAAAAATCCATATTATCTATATAGATAATT‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTT < 2:2806238/125‑1 AAGCAAAAACCTCCATATTATCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTT < 1:558069/128‑1 CAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATAT‑‑AT‑GCAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTT > 2:2747568/1‑128 CAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTT > 2:860704/1‑128 CAAAAACATCAATATTAAATATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTAT < 1:834091/128‑1 tAAAACCTCCATATTACCTATAGAGTTTATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATT < 1:2404629/127‑1 AAAACCTCTATATTATCTTTAGAGTTAATT‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTT < 2:2989655/128‑1 AAACCTCCATATTATCTATAGAGTTAAAG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAGGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATA < 2:2131095/128‑1 AACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCATAATAAAATAGATAAATATATATCTGAGTTTGTCTTAAATTTGTATTTTTTATTTAT > 2:3114426/1‑128 ACCTCCATATTAACTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATAGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATA < 2:1528057/128‑1 aCTCAATATAAGCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATATATAT‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTT < 2:2100272/127‑1 CCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTTGTATTAAATTTGTAGTTTTTATTTATAG > 2:2039381/1‑128 CTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTATTAAATTTGTAGTTTTTATTTATAGT > 1:2371998/1‑128 CTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GAAAGCGATCAGCATAAAATGGTGAAATTTATATCTGAGTTTGTCTTAAATATGTAGTTTTTATATATAtt > 2:2024559/1‑126 CCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATAT‑‑AT‑GCAAGCTATGATAATAAAATGGTGAAATTTAGATCTGAGTTTGTGTTAAATTTTTAGTTTTTATTTATAGT > 1:1518837/1‑128 CCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAATATGGTGAAATATAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTT > 2:1728386/1‑128 CCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTT > 2:1991163/1‑128 ATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAA > 2:1230916/1‑128 TATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATATAGATCTGAGTTGGTCTTAATTTTGTAGTTTTTATTTATATTTTATA > 1:404975/1‑128 TACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GAAAGCGATCAAAATAAAATTGTGAAATATATATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATATTTTATAAttat > 2:382835/1‑124 ACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATAT‑‑AT‑GCAAGCGATCAGCATAAAAATGTGATATTTAGATCTGAGTTGTTCTTAAATATGTAGATTTTATTTATAGTTTATAAA > 2:2329801/1‑128 ACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑TCAAGCGATCAGAATAAAATGGTGATATATAGATCTGTGGTGGTGTTAAATTTATAGTTTTTATTTATATTTTATAtatt > 1:447461/1‑124 tCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTT < 2:3180888/127‑1 catTAGAGTTTATG‑‑ATATATATC‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGAGCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTA < 2:1022322/125‑1 ATAGAGTTTATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAAT < 2:1084306/128‑1 AGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCATCATAAAATTGTGAAATTTAGATCAGAGTTGGTCTTAAATTTTTATTTTTTATTTATAGTTTATAAAGATAATAA > 1:507011/1‑128 GAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTT < 1:31129/128‑1 GTTAATG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑TCAAGCGATCATCATAAAATGTTGAAATATAGATCTGAGTTTGTCTTAAATTTATATTTTATATTTATATTTTATATATTTAATAATTT > 1:2907313/1‑128 TAATG‑‑ATAAATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAG < 1:919775/128‑1 attgatATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTA < 1:2667635/122‑1 atatatATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTA < 2:2388558/122‑1 atTG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGA < 2:52214/126‑1 agttatATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTA < 1:3209425/122‑1 TG‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAATTTTGTAGTTTTTATTTATAGTTTATATAGTTAATAATTTAGATT > 2:2662043/1‑128 attATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GAAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAT < 1:1271025/125‑1 G‑‑ATATATATA‑‑TATATATATATATATATATATA‑‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTT < 2:224365/128‑1 ||||||||| ATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATA‑‑TATATATATATATATATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP016816/437782‑437908‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTT > CP016816/437909‑438029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |