New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202483150 (0.100)235 (0.150) 52/252 31.9 62.0% intergenic (+261/‑414) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202487 = 138 (0.090)intergenic (+265/‑410) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 336 total aligned reads displayed.

TGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202356‑202604
                                                                                                                                 |                                                                                                                           
  aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCt                                                                                                                           <  1:1936041/128‑1 (MQ=255)
   aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                          <  1:436633/128‑1 (MQ=255)
    gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCACtaa                                                                                                                         >  2:2630139/1‑126 (MQ=255)
     ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTAATATGTATAT‑CATCACAAAT‑AAAAAAAAACAATCACCttaaa                                                                                                                       >  1:2757621/1‑125 (MQ=255)
     ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTAATATAT‑CTTCACAAATAAAAAAAAAACAAACCCAttaa                                                                                                                        >  1:292350/1‑126 (MQ=255)
       aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTAATAATGTATATCCTCGTGATCTATTATTTTATATGTTAAT‑CTAAACAAATAAAAAAAAAAAAAACACCtaaaaa                                                                                                                      >  2:1758156/1‑123 (MQ=255)
        gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAAACACCtaaaaaa                                                                                                                     >  2:2743476/1‑122 (MQ=255)
         tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAAACCACttaaaaat                                                                                                                    >  1:2652611/1‑122 (MQ=255)
             aataatAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAATCCCCttaaaaattaaa                                                                                                                >  1:2522947/1‑118 (MQ=255)
               taataGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAT‑CTTCACAAAAAAAAAAAAAACAATCACC‑‑ttaaaa‑att‑aaaaa                                                                                                          >  2:2870174/1‑128 (MQ=255)
                  taGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAATCAAC‑‑TTAAAA‑AAT‑aaaaaaaa                                                                                                       >  2:2602427/1‑128 (MQ=255)
                       ttAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCAAAAATAAAAAAAAAACAATCCC‑‑‑ATAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                 >  1:1054519/1‑128 (MQ=255)
                        tAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAACCAATCCCCTT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaa                                                                                                >  1:1764357/1‑128 (MQ=255)
                        tAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCAAC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                 >  1:1179594/1‑128 (MQ=255)
                         aaGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTAT‑CATCAAAAATAAAAAAAAAAAAAAAAAATT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaaa                                                                                               >  1:1639473/1‑128 (MQ=255)
                         aaGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                >  1:2809921/1‑128 (MQ=255)
                         aaGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaaaa                                                                                                >  2:2581794/1‑128 (MQ=255)
                         aaGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                >  1:834742/1‑128 (MQ=255)
                         aaGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCAAAAATAAAAAAAAAAAAAATCACATaaaaaa‑aaa‑aaaaaaaaaaaaa                                                                                                  >  1:1889445/1‑128 (MQ=255)
                           gttaataaaaaaTACTTAAAA‑TTTAATATTTTTTA‑AATTTTGATCCACGTGTTTTTTTTTTTTTTTTTTTTAA‑TTTCCAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                             <  1:3039593/120‑1 (MQ=255)
                           ggTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCATT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaaaaa                                                                                             >  1:751593/1‑128 (MQ=255)
                           ggTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTCATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAAACCCATT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaaaaa                                                                                             >  2:383843/1‑128 (MQ=255)
                            tttaattaaAAAACCAAAAA‑AATAAAAATTTTTTTAATTTATATACTTTTTATCTTTTTTTTTTTTTTTTTTA‑TTTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                             <  1:3299482/127‑1 (MQ=255)
                            gTTAATTAAAAAACCATAAA‑ATTAATAAATATTATAAATTCTACCCTCGTGATTTTTTTTTTTTTTTGTTTAT‑TTTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                             <  1:3086596/128‑1 (MQ=255)
                             gttattaaAAAAACATTAA‑ATTAATAAATAATATAATTTATAACCTATTGAAATATTTTTTTATTTTTTTAT‑CATCAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaaaaaaaa                                                                                            <  2:1462272/125‑1 (MQ=255)
                              taattaaAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCTTGATCTAATTTATAATTTTAATAT‑ATACACAAAAAAAAAAAAAACAAACCAC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaa                                                                                           >  1:27357/1‑128 (MQ=255)
                              taattaaAATAACATAAA‑CTTAATAATTCTTATAATTTATATACTAGTTATCTATTTTTTTATTTGTTTAT‑CTTAACAAATAAAAAAAAAAAAAT‑‑CAAATTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaa                                                                                           >  2:527698/1‑128 (MQ=255)
                               aattaaAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                         >  1:320236/1‑100 (MQ=255)
                               aattaaAATAACAAAAA‑ATTAATAATTTTTATAATTTTTATACTCTTTTTGTATTTTTTTATTTTTTTAT‑CTTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                          <  2:3036418/128‑1 (MQ=255)
                                attaaAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCACTTAAAAAT‑TAT‑aaaaaaaaaaaaaaaaaaaa                                                                                           >  2:418402/1‑128 (MQ=255)
                                attaaAATACCATAAA‑ATTAATAAATCTTATAATGTAAATACTAATTATATATTTTAATATTAGTTTAT‑ATACACAAATAAAAAAAAAAAAAT‑‑CAAATAAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                         >  2:2041781/1‑127 (MQ=255)
                                 ttaaAATACCATAAA‑CTTAATAATTCTTATAATCTAGATCATCGAGATCTATATTTTTATTTTTTTAT‑CTTCAAAAATAAAAAAAAAACAA‑‑ACAAATAAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:2723145/1‑126 (MQ=255)
                                   aaaaataaaaaaa‑aTTAATAATTATTATAATTTATATAAAATTTATAAATTTTTTTATTTTTTTAA‑CATAAAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTaaa                                                                                     <  2:961785/118‑1 (MQ=255)
                                   aaaaTACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:673658/1‑124 (MQ=255)
                                   aaaaTACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAAACCCC‑‑TAAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:2948575/1‑124 (MQ=255)
                                   aaaaTACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAAT‑‑ACAATTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  2:834486/1‑124 (MQ=255)
                                   aaaaTAAAAAAAA‑ATTAATAATTTTTATAATTTTTATCCTCGTTTTTTTTTTTTTTTTTTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaacta                                                                                      <  1:3235256/128‑5 (MQ=255)
                                    aaaTACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:3112161/1‑123 (MQ=255)
                                     aaTACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  1:3163808/1‑128 (MQ=255)
                                     aaTACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCAC‑‑ATAAAA‑ATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  1:944227/1‑128 (MQ=255)
                                     aaTACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAA‑Taaaaa                                                                                   >  1:1747534/1‑128 (MQ=255)
                                     aaTAACATAAATATTAATAA‑TATTTTAATTTATATCCTTGTTTTATTTTTTTTTTTTTTTTTTT‑TTTAACAAAAAAAAAAAAAAAAATTCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                    <  1:71387/128‑1 (MQ=255)
                                       atacactaacattAATAATTCTTATAATTTTGATCCTAGTGATATATTTTTTTATTTGTTTAT‑ATTAACAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                 <  1:2623976/117‑1 (MQ=255)
                                         acATTAA‑ATTAATAATTTTTATAATTTTATTTCTGGTTTTTTTTTTTTTTTTTTTTTTAT‑TTTAAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                <  1:2821778/127‑1 (MQ=255)
                                          caaaaa‑attaaaaattaTTAAAAATTATATACTCGTGTTCTATTTTTTTATTTGTTTAT‑ATTAAAAAATAAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                              <  2:2697627/125‑1 (MQ=255)
                                               aaattAAAAATTTTTATAATTTATATACTCGTTATCTATTTTTTTATTTTTTTAT‑CTTAACAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  2:687772/125‑1 (MQ=255)
                                               aaattAAAAATTATTATAATTTATAAAATCTTTATATATTTTTTTATTTTTATAT‑CTTAACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  2:2020553/125‑1 (MQ=255)
                                                  ttAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAACAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAAATAAaaacaaaataattt                                                                        >  1:2892987/1‑121 (MQ=255)
                                                      taatTCTTATAATTTAGATTCACTTGATATATTTTTTAATTTGTTAAT‑ATTCAAAAAAAAAAAAAAAAAAATCCCC‑‑TAAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                    <  2:307447/128‑1 (MQ=255)
                                                      taatTATTATAATTTATAAACACGTTATCTATTTTTTTATTTTTTTAT‑ATTCAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                   <  2:3285272/128‑1 (MQ=255)
                                                       aatTTTAATAATTTATATCTTTTTTATATATTTTTTTATTTTATTAT‑ATTTAAAAATAAAAAAAAAAAAATACCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                    <  2:2425150/128‑1 (MQ=255)
                                                                aatttttataatCGTGTTATATTTTTTTTATTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAATACCC‑‑ATAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                          <  2:3250725/117‑1 (MQ=255)
                                                                      aatacttttGATATATTTTTTTTATTTTTTAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACCCATAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                     <  2:1664829/120‑1 (MQ=255)
                                                                       atcaactttttttatttttttattttttTAT‑CTTCAAAAATAAAAAAAAAACAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                    <  2:3169814/116‑1 (MQ=255)
                                                                       aaaataattatatatttttttattttttTAA‑ATTAAAAAATAAAAAAAAAAAAATACAC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  2:505992/116‑1 (MQ=255)
                                                                          ctctttttatATTTTTTTTTTTTTTTAT‑ATTCAAAAATAAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                <  2:1901750/119‑1 (MQ=255)
                                                                          cTCGTGATC‑ATTTTTTTTTTTTTTTTT‑ATTAAAAAAAAAAAAAAAAAAAAAAAACCCTTTAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  2:1828462/128‑1 (MQ=255)
                                                                           acgttaaaaaTTTTTTTATTT‑TTTAA‑ATTAAAAAAAAAAAAAAAAAAAAAACCAAT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  2:2451754/119‑1 (MQ=255)
                                                                            ttttttttatttttttattttttTAT‑ATTAAAAAAAAAAAAAAAAAAAAATACC‑CTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                               <  2:776641/121‑1 (MQ=255)
                                                                            agtttaatATTTTTTTATATTTTTAA‑AATAAAAAAAAAAAAAAAAAAAATACCC‑‑‑TAAAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  2:940885/121‑1 (MQ=255)
                                                                             ttttttaatttttttatttttttAT‑TTTTAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  1:2041781/121‑1 (MQ=255)
                                                                             gtgaattatttattTAATTTTTTAT‑ATTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  2:2220713/122‑1 (MQ=255)
                                                                              tatttattttttttattt‑ttttt‑atTAAAAAAAAAAAAAAAAAAAATACAC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  2:1782113/121‑1 (MQ=255)
                                                                               tataaaattttttttttttttAA‑ATTAAAAAATAAAAAAAAAAAAATGACC‑‑ATAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  2:2165094/121‑1 (MQ=255)
                                                                                  tattttttttATTT‑TTTAT‑ATTTACAAATAAAAAAAAAA‑AATCCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  2:1618725/125‑1 (MQ=255)
                                                                                  atatttttttattttttTAA‑ATTAAAAAAAAAAAAAAAAAAAATACCC‑‑ATAAAA‑AAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:3011797/127‑1 (MQ=255)
                                                                                   aaTTTTTTTAATTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  2:34613/127‑1 (MQ=255)
                                                                                    ttttttttATTT‑TTTAT‑ATTTAAAAATAAAAAAAAAAAAATACCCTTT‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                     <  2:1471266/127‑1 (MQ=255)
                                                                                    atttttttatttttttAT‑TTTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:2460813/128‑1 (MQ=255)
                                                                                     ttttttttttttttttT‑AATAAAAAAAAAAAAAAAAAAAATCCC‑‑ATTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                     <  2:704445/128‑1 (MQ=255)
                                                                                     tttttttatttttttaT‑ATTCACAAATAAAAAAAAAAAAATACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                     <  2:2525480/128‑1 (MQ=255)
                                                                                     tttttttatttttttaA‑TTTAAAAAATAAAAAAAAAAAAATCACCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:1267767/128‑1 (MQ=255)
                                                                                     tttttttATTT‑TTTATAATTAAAAAATAAAAAAAAAAAAAAAACCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:2782351/128‑1 (MQ=255)
                                                                                      ttttttATTTTTTTAA‑TATAAAAAAAAAAAAAAAAAAAAT‑‑ACAATAAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:1302584/128‑1 (MQ=255)
                                                                                      tttttaATTAGTTTAT‑AATAAAAAATAAAAAAAAAACAATCCCC‑ATAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                     <  2:658628/128‑1 (MQ=255)
                                                                                       ttttttttttttttT‑ATTAAAAAAAAAAAAAAAAAAAAAACCCTTT‑‑AAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                  <  2:2911247/128‑1 (MQ=255)
                                                                                       tttttATTTTTTTAT‑ATTAAAAAATAAAAAAAAATATATCAAC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:1931700/128‑1 (MQ=255)
                                                                                        ttttAATTTTTTAT‑ATATAAAAAAAAAAAAAAAAAAAAAACCAA‑TAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:1439331/128‑1 (MQ=255)
                                                                                         tttATTTTTTTAT‑TATAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:2328571/128‑1 (MQ=255)
                                                                                           tATTTTTTTAT‑TATTAAAAAAAAAAAAAAAAAAAAACCATTT‑‑AAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                               <  2:1179551/128‑1 (MQ=255)
                                                                                           tATTTTTTTAT‑ATTAAAAAATAAAAAAAAAACAATCCAATT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  2:597370/128‑1 (MQ=255)
                                                                                             ttttttTAT‑TTAAACAAA‑AAAAAAAAAAAAAAAACCAATAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  1:2572127/128‑1 (MQ=255)
                                                                                                    taaaattaaaaaaaaaaaaaaaaaaATACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:3021972/119‑1 (MQ=255)
                                                                                                     atattaaaaaaTAAAAAAAAAAAAATACAC‑TTTAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                       <  2:458643/120‑1 (MQ=255)
                                                                                                     ataataaaaaaaaaaaaaaaaaaaATCCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:227071/120‑1 (MQ=255)
                                                                                                       attCAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                    <  2:2944750/127‑1 (MQ=255)
                                                                                                       atataaaaaaaaaaaaaaaaaaaaaaCCCATAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  1:1397449/122‑1 (MQ=255)
                                                                                                         taaaaaaTAAAAAAAAAAAAAACACCTTAAAAAA‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                    <  1:2866866/124‑1 (MQ=255)
                                                                                                           caaaaaaaaaaaaaaaCAA‑‑ACCAATTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                <  2:3227550/126‑1 (MQ=255)
                                                                                                            caAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACAATATTTATTAAAATACCATTTTAAACCACATTTTATTTTTAAAATAAGATATTGAAAAaataaata           >  2:2809729/1‑128 (MQ=255)
                                                                                                            aaaaaaaaaaaaaaaaaaaACCCA‑‑TAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                <  1:383668/127‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaaaaaaaCCAATT‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata               <  2:1107041/128‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaaaATCAAATTATAAAT‑TA‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata               <  2:1732040/128‑1 (MQ=255)
                                                                                                              aaTAAAAAAAAAACTATAACATTT‑‑AAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata             <  2:2360018/128‑1 (MQ=255)
                                                                                                               attaaaaaaaaaCAATCCCATT‑‑‑AAA‑AAT‑‑ATAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat          <  1:2492272/125‑1 (MQ=255)
                                                                                                                 aaaaaaaaaaaaATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  2:1878412/128‑1 (MQ=255)
                                                                                                                    aaaaaaaCAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACAAAAAACAAACAAAATTTAAAAAAATAACATTTTAAAAAAATTTTAATTTTTAAATAAAAATATTTATATAatatataaata       >  1:2181414/1‑124 (MQ=255)
                                                                                                                     aaaaaaaaATACACTTTTAAAATAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  1:2536975/128‑1 (MQ=255)
                                                                                                                        aaaCAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACACAATTAATTAAAATTCCATATTATACCACATTTTATTTTTAAAAAAAAAAATTGACAAAATtaatatataatata  >  2:3185941/1‑128 (MQ=255)
                                                                                                                         aaCAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAGATTTTTGTTAAAATAACATATTATACAAAATTTAATTTTTAAATAAATATATTAAAAAAATAATTATAAAatata  >  1:2724023/1‑128 (MQ=255)
                                                                                                                                 |                                                                                                                           
TGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAA‑CTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202356‑202604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.