New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 165253 =1165 (0.760)215 (0.160) 100/220 16.1 18.1% intergenic (+217/‑325) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
?CP016816 = 165249 932 (0.690)intergenic (+213/‑329) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1262 total aligned reads displayed.

GATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAA‑TATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAA  >  CP016816/165122‑165375
                                                                                                                                  |                                                                                                                                
gATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGc                                                                                                                                  >  1:1826439/1‑128 (MQ=255)
   aataTTTATTTTATATAAATTTTCTCACTTTTATTAATTATTTATAAACTAAAAATATTA‑TCTTTTTAGATTTTTTTTTTTTATTCAAA‑TTTTTTAAAAATTA‑ATTTTAAATTGTAAAAAATAGCttt                                                                                                                               <  1:1567314/128‑1 (MQ=255)
       tttATTTTAAATAATTTATAGCACTTGTATTTATTTTTAATTAAATAAAAATTTTA‑TATTTTTAGATATTTTTTGTATATTCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttt                                                                                                                           <  1:3320442/128‑1 (MQ=255)
        ttatgttaaTTAATTTATCCCACTTTTTTGAATTAGTAATAAAATAAAAATATTA‑TCTTTTTATATATTTTTTGTATATTCAAA‑TTTTTAAAAAATTA‑ATTTTAACTTGTAAAAAATAGCtttttttt                                                                                                                          <  1:2531964/120‑1 (MQ=255)
         tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                         >  2:1995638/1‑128 (MQ=255)
          atttttcttAATTTATCGCACTTTTAAGAATTATTAAGAAAAAAAAAATATTA‑TCTTTTTATATATTTTTTGTATATGCAAA‑TTTTTAAAAAAATA‑ATTTTAACTTGTAAAAAATAGCtttttttttt                                                                                                                        <  2:3144030/121‑1 (MQ=255)
           gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGAttttttttttt                                                                                                                       >  2:47170/1‑128 (MQ=255)
            tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttattttt                                                                                                                      >  2:301009/1‑128 (MQ=255)
               cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttttttttttt                                                                                                                   >  1:1753482/1‑128 (MQ=255)
               cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttttttttttt                                                                                                                   >  2:2811400/1‑128 (MQ=255)
               cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttttttttttt                                                                                                                   >  2:2859754/1‑128 (MQ=255)
                aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCtttttttttttttttt                                                                                                                  >  1:1083551/1‑128 (MQ=255)
                 ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttttttttttttt                                                                                                                 >  2:2561548/1‑128 (MQ=255)
                    aTTTATCTCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCtttttttttttttttttatt                                                                                                              >  1:187545/1‑125 (MQ=255)
                     tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttttttttttttttata                                                                                                             >  1:314134/1‑125 (MQ=255)
                     tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCttttttttttttttttttata                                                                                                             >  2:1569174/1‑125 (MQ=255)
                     tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGAAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATATCttttttttttttttttttaaa                                                                                                             >  2:2332749/1‑125 (MQ=255)
                        ttagcaaatGTATGAATTTTTAACAAACTAAAAATTTTA‑TCTTTTTTGATATTTTTTGTAAATTCAAA‑TTTTTAAAAAATTA‑ATTTGTACTTGTAAAAAATAGC‑CTTTTTTTTTTTTTTTTTATAATg                                                                                                         <  2:1656283/120‑1 (MQ=255)
                         tCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCtttttttttttttttataaaattga                                                                                                         >  2:851302/1‑118 (MQ=255)
                          cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATgaa                                                                                                       >  2:2703001/1‑126 (MQ=255)
                           gCACTTGTATTAATTAGTAATAAAAAAAAAATATTA‑TCTTTTTATAAATTTTTTGTATATTCAAA‑TTTTTAAAAAAATA‑ATTTTAACATTTAAAAAAAACCATTTTTTTTTTTTTTTTTTATAATGGa                                                                                                       <  2:2106966/128‑1 (MQ=255)
                              cTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGTAAtta                                                                                                   >  1:203131/1‑128 (MQ=255)
                               ttGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAttat                                                                                                  >  2:1065026/1‑128 (MQ=255)
                                 ttttttaataataataaTCTAAAAATAATA‑TCTTATTATATATTTTTTTTATTTCTTAA‑TATTTAAAAAATTA‑ATTTCAACATTTAAAAAAAACC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                               <  1:3187208/117‑1 (MQ=255)
                                  tctGAAATACTAACTAACAAAAACTTATA‑TATTTTTATCTTAGTTTTGTAAATGCAAA‑ATTTTAAAAAATTA‑ATTTGTCAATGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATaa                                                                                                <  1:230291/126‑1 (MQ=255)
                                  tATGAATTAGTAAGAAACTAAAACTATAA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAAAAGATTTTTTTTTTTTTATTTTAAAAAATAAAATATaa                                                                                                >  1:72115/1‑128 (MQ=255)
                                   aTGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAAt                                                                                              >  2:1265040/1‑128 (MQ=255)
                                   aTGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAAt                                                                                              >  2:615080/1‑128 (MQ=255)
                                    ttaaTTATTAAGAAAATAAAAATATTA‑TATTTTTATATATTTTTTTTTTATTAAAA‑TTTTTAAAAAATTA‑ATTTTAAATTTTTAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                             <  2:526372/126‑1 (MQ=255)
                                    agAATTATTTATAAAATAAAACATTTT‑TTTTTTTATATATTTTTTTTTTATGCAAA‑TTTTTAAAAAATTA‑ATTTGAAATTTTAAAAAA‑ATTCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                             <  2:2902522/127‑1 (MQ=255)
                                     ttatttttaataaAATAAAAATATTT‑TATTTTTTTTTATTTTTTTTTTATTAAAA‑TTTTTAAAAAATTA‑ATTTTAAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                             <  2:790354/121‑1 (MQ=255)
                                      aaTTAGTTAGAAACTAAAACTTTTA‑TATTTTTATTTATTTTTTGTATATTCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtttt                                                                                           <  2:342771/128‑1 (MQ=255)
                                       aTTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAATTATAAATTTTa                                                                                          >  1:2832584/1‑128 (MQ=255)
                                        ttAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTa                                                                                          >  2:942783/1‑128 (MQ=255)
                                        ttAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGAAAATATAAttttaaa                                                                                         >  2:2276082/1‑125 (MQ=255)
                                         tttttataaaataaaaattTTA‑TATTTTTATTATTTTTTTGTATATGCAAATTTTTAAAAAAATTA‑TTTTTAATTTTTAAAAAA‑A‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                       <  1:24965/121‑1 (MQ=255)
                                         tatttaaaaaataaaaattTTATTCTTTTTTTTTATTTTTT‑TTTATTTAAATTTTTTAAAAAATTA‑ATTTTAAATT‑TAAAAAAAATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAgg                                                                                        <  2:1696286/121‑1 (MQ=255)
                                         tAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGTAAATATAAATTTTAgt                                                                                        >  2:3091103/1‑127 (MQ=255)
                                          tttAAAAAAATAAAAATATTA‑TATTTTTTTTTATTTTTTTTATATTTAAA‑ATTTTTAAAAATTT‑ATTTTTATTTTTTAAAAATA‑TGTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                       <  2:1757680/126‑1 (MQ=255)
                                          atttataaaaaaaaaataTTT‑TTTTTTTTTTTATTTTTTTTTTATTTTAA‑TTTTTAAAAAATTATATTTTAAAATTTAAAAAA‑A‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                       <  1:541932/117‑1 (MQ=255)
                                          attaataaAATAAAAATATTA‑TATTTTTATTTATTTTTTTTAAATTCAAA‑TTTTTAAAAAATTA‑ATTTTAAATTTTAAAAAATTTC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                       <  1:772973/126‑1 (MQ=255)
                                          aGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATTTAAATTTTAGGTa                                                                                      >  2:2731266/1‑128 (MQ=255)
                                           gTAATAAAATAAAAATATTA‑TATTTTTAGTTTTTTTTTTTATATGCAAA‑TTTTTAAAAATTTA‑ATTTGAACTTTTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTa                                                                                      <  2:3056131/128‑1 (MQ=255)
                                            taataaAATAAAAATTTTT‑TTTTTTTTTTTTTTTTTTTTTTATTTAAA‑TTTTTTAAAAAATT‑ATTTTAATTTTTAAAAAAT‑TTATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                     <  1:3055980/128‑1 (MQ=255)
                                            tAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTAt                                                                                     >  2:2620089/1‑128 (MQ=255)
                                             aaGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAAAATAAATTTTattaattt                                                                                   >  1:1689377/1‑121 (MQ=255)
                                             aaGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGtttttt                                                                                   >  1:2889519/1‑128 (MQ=255)
                                               gAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTAttt                                                                                   >  2:2517326/1‑128 (MQ=255)
                                                aaactaaaactaTTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATTAAAATTTTTTTTAttttt                                                                                 >  2:3282745/1‑127 (MQ=255)
                                                 aactaaaactaTTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAT‑‑TGTAAAAAAAAATTTTATGTATttttttt                                                                              >  1:3256777/1‑127 (MQ=255)
                                                    taaaactaTTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTAAAATATAAATTTTATTTATttttttttaa                                                                           >  2:1329518/1‑124 (MQ=255)
                                                     aaaactaTTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTATTTATTTTTTAAAATTTAAATATAAATTTTATATATtttttttt                                                                             >  2:2668589/1‑126 (MQ=255)
                                                     aaaactaTTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTATGTATTttgtttta                                                                            >  1:620369/1‑125 (MQ=255)
                                                         aattttttttttttATATTTTTTTTTTTTATTAAAA‑TTTTTTAAAAAATA‑ATTTTAAAATTTTAAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                        <  2:1412616/119‑1 (MQ=255)
                                                          tatta‑tCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGGAAATATAAATTTTTTGTATTTTGTTTTCTaataa                                                                      >  1:2172281/1‑125 (MQ=255)
                                                           atta‑tCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATATTGGAAATTAAAATTTTAGGTTTTTTTTTGTATAAGTa                                                                      >  1:2674218/1‑128 (MQ=255)
                                                           atta‑tCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGTTATTTTTTTGTATAATTAta                                                                    >  1:2103542/1‑127 (MQ=255)
                                                            tta‑tTTTTTTATTTATTTTTTGTTTTTTTAAA‑TTTTTATAAAATTA‑ATTTTAAAATGTTAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑c                                                                   <  2:2948755/128‑1 (MQ=255)
                                                            tta‑tCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTATTTTAAATTTAAATTTTAGTAATttttttttatattta                                                                      >  1:162995/1‑119 (MQ=255)
                                                            tta‑tATTTTTATTTTTTTTTTTTTTAAGGAAA‑TTTTTTAAAAAATT‑ATTTTTACTTTTAAAAAA‑ATTCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  1:2602137/128‑1 (MQ=255)
                                                             ttttatttttATATATTTTTTGTATATTCAAA‑ATTTTAAAAAATTA‑ATTTTAACTTGTAAAAAATAG‑‑‑GTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑Ct                                                                  <  1:1396162/123‑1 (MQ=255)
                                                             ta‑tCTTTTTTGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTGTTTTATAATTAT‑c                                                                   >  2:112539/1‑128 (MQ=255)
                                                             ta‑tCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGGAATTATAATTTTTTGGTATTTTGTTTTGTAAGTAta                                                                    >  1:2943698/1‑127 (MQ=255)
                                                                   ttttAGATA‑TTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATTATTTAAATATAAATTTTATTAATTTTTTTTTATAATTAA‑ATaaaaa                                                             >  2:2045469/1‑128 (MQ=255)
                                                                     ttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGAAAAAATAAATTTTAGTTATTTTTTTTTAAAATTAT‑ATaaaaaa                                                            >  1:1256519/1‑128 (MQ=255)
                                                                     ttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAATTGAAATTATAAATTTTAGTTATTTTTTTTAATAATTAA‑ATaaaaaat                                                           >  2:2163578/1‑127 (MQ=255)
                                                                         atatTTTTTGTATATTCAAA‑TTTTTAAAAAATTA‑ATTTTAAATTTTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAg                                                        <  2:3240441/128‑1 (MQ=255)
                                                                         atatTTTTTGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTGTATAATTAT‑ATAAAAAAATAGaaa                                                     >  2:679508/1‑128 (MQ=255)
                                                                          tatTTTTTGTATATTGAAA‑TTTTTAAAAAATTA‑ATTTGTAATTTTTAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGa                                                       <  2:1200216/128‑1 (MQ=255)
                                                                             tttttGTATATGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAAATTTTATATTTAAATTTTATTAATTTTTTTTTAAAATTAT‑ATAAAAAAAttaaaa                                                     >  2:1019694/1‑123 (MQ=255)
                                                                                ttttttttttaaa‑TTTTTAAAAAATTA‑ATTTTTAATTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGa                                                  <  2:1520163/118‑1 (MQ=255)
                                                                                ttttaattgtaaa‑TTTTATAAAAATTA‑ATTTTAACTTTTAAAAAATA‑‑TCGTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGaaa                                                <  1:3099352/118‑1 (MQ=255)
                                                                                ttgattatGAAAA‑TTTTAAAAAAATAA‑TTTTGACATTTTAAAAAA‑A‑TTCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGaaa                                                <  1:925072/123‑1 (MQ=255)
                                                                                   tttatttaaa‑TTTTTAAAAAATTA‑ATTTTTAATTTTAAAAAAT‑TTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGaaaaa                                              <  1:1119768/121‑1 (MQ=255)
                                                                                     tatGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTGTTTTTTTGTTTTGTAAGTAT‑AAAAAAAAATATAAAGaaaaaatt                                            >  1:2710127/1‑126 (MQ=255)
                                                                                       tGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTATTTATTTTTTTTTATAATTAT‑ATAAAAAAATATAAATTAAAAAa‑tat                                         >  2:2766737/1‑128 (MQ=255)
                                                                                          aaa‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAAAATGTAAATATAAATTTTAGTTATTTTGTTTTATTTGTTT‑ATAAAAAAATAGAAATAAAAAAA‑TAttt                                       >  2:3191774/1‑127 (MQ=255)
                                                                                          aaa‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTAATAATGTAATAATAAATTTTAGTTATTTTTTTGTGTAATTAA‑CTAAAAAAATTAAAAGTAAAAAA‑TATtttt                                     >  1:280096/1‑128 (MQ=255)
                                                                                            a‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAAAAAAAATTTTATGTATTTTTTTTTATAATTAT‑ATAAAAAAATAAAAAGGAAAAAA‑TTTTTTTa                                    >  1:1937248/1‑128 (MQ=255)
                                                                                              ttttTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATTATTTAATTATAATTTTTTGTTTTTTTTTGTTATAAATAT‑ATAAAAAAATATAAATGAAAAAA‑Tttttttta                                   >  2:729990/1‑126 (MQ=255)
                                                                                               tttAAAA‑AATTT‑ATTTTAAATTGTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAA‑TATTGTTaaaa                                 <  1:828358/128‑1 (MQ=255)
                                                                                                  ttaaatatta‑attTTAATTTTTAAAAAAT‑TTTTTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAA‑TATTGTTAAAAGt                               <  2:42052/122‑1 (MQ=255)
                                                                                                     ataatta‑attTTAAATTTTAAAAAAT‑TTATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAA‑TATTGTTAAAAGTAAt                            <  1:700802/126‑1 (MQ=255)
                                                                                                       aatta‑attTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTTTTTTTTATAATTAT‑‑TAAAAAAAAAAAAATTAAAAAATTATTTTTaaatttaaaaa                          >  2:1622626/1‑120 (MQ=255)
                                                                                                       aatta‑attTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAAAGTAAATAAAAATTTTTTGTTTTTTTTTTTAAAATTA‑‑AAAAAAAAAAAAAAAAGTAAAAA‑TAATTTTAAAAATaaaaag                         >  1:1051859/1‑124 (MQ=255)
                                                                                                       aatta‑attTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAAAGAAATTAAAAATTTTAGTTATTTTGTTGTCTAAGAAT‑GTAAAAAAAATAAATGTAATAAA‑TATTTTTAAaataaataa                          >  2:1836641/1‑127 (MQ=255)
                                                                                                        atta‑attTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTTAAATATTAATTTTATTTTTTATGTTTGATATTTAT‑ATTAAAAAATATAAATTAAAAAA‑TATTTTTTAAATTAataata                        >  2:771438/1‑128 (MQ=255)
                                                                                                        atta‑attTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTTTTTTTTTTTATATTTTT‑ATAAAAAAATTAAAAGTAAAAAA‑ATTTTTTAAAATTAATaat                         >  2:573718/1‑126 (MQ=255)
                                                                                                        atta‑attTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATAAAATTTTTTGTTTTTTTGTTTTATATTTTA‑ATAAAAAAATATAAAGTAAAAAA‑TATTTTTAAAATTAATaat                         >  2:1913018/1‑126 (MQ=255)
                                                                                                        aata‑attTTAAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAA‑TATTGTTAAAAGTAATACTa                        <  1:2749436/126‑1 (MQ=255)
                                                                                                              tttGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAAAATTTAAATTTAAATTTTTGTTTTTTTTTTTTTTATTTTT‑ATAAAAAAATAAAAAGAAAAAAA‑TATTTTTAAATTTATTAATaaat                     >  2:2449626/1‑127 (MQ=255)
                                                                                                              tttGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TATTGTAAATATAAATTTTTGTTTTTTTGTTGTGAAAGTAT‑ATAAAAAAATATAAAGTAAAAAA‑TTTTTTTAAAAGTAATAATAAAat                    >  1:1332083/1‑128 (MQ=255)
                                                                                                              attttatttttAAAAAATTG‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATTAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAA‑TATTGTTAAAAGTAATACTAAAat                    <  1:2414869/118‑1 (MQ=255)
                                                                                                                  aaCTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTGTTTTATAAGTAT‑ATAAAAAAATATAAAGTAAAAAA‑TATTTTTAAAATTTATAATAAAattatt                >  2:2374199/1‑128 (MQ=255)
                                                                                                                    cTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTGAAAAAAAAATTTAAGGTATTTTTTTTAAAAATTAA‑ATAAAAAAATAGAAAGAAAAAAT‑TATTGTTAAAATATAAACAAAAATAATTTaa             >  1:2258152/1‑128 (MQ=255)
                                                                                                                     ttGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTAATAATGTAAATAAAAATTTTAGGTATTTTTTTTTATAAGTAT‑CTAAAAAAATAAAAAGAAAAAAT‑AATTGTTAAAATATATAAAAAAATTTTTTaa             >  1:301186/1‑128 (MQ=255)
                                                                                                                        tAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGTAAATAAAAATTTTAGGTATTTTGTTTTCTAAGTAG‑ATAAAAAAATAGAAAGTAAAAAA‑ATTTGTTAAAAGAAAAACTAAAATTTTTTAAtttt         >  1:405035/1‑128 (MQ=255)
                                                                                                                        tAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATTATGGAAAATTAAATTTTATTTTTTTTTTTTTATAATTATATTAAAAAAATA‑AAATGAAAAAA‑ATTTTTTAAAATTAATAAAAAAATTATTTAAttt          >  1:1503408/1‑126 (MQ=255)
                                                                                                                            aaaTAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTTTTTTGTTTTATAATTAT‑ATAAAAAAAAAAAAAGGAAAAAA‑TATTTTTAAAAATAATACTAAAATTAtttaattttaat      >  1:1004594/1‑128 (MQ=255)
                                                                                                                             aaTAGC‑TTTTTTTTTTTTTTTTTTATTTTGGATATTTTATTTTTAGGTATTTTGTTTTATATGTAT‑ATAAAAAATTATAAAGGAAAAAA‑TATTTTTAATTTTTATAGTAAATTTATTTAATGttaatt     >  2:2211541/1‑128 (MQ=255)
                                                                                                                                  |                                                                                                                                
GATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAA‑TATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAA  >  CP016816/165122‑165375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.