New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 87902592 (0.590)228 (0.210)
+TTT		 64/216 13.9 25.7% intergenic (+29/‑831) JCVSYN2_00345/JCVSYN2_00350 hypothetical protein/50S ribosomal protein L31
?CP016816 87903 = 678 (0.600)intergenic (+30/‑830) JCVSYN2_00345/JCVSYN2_00350 hypothetical protein/50S ribosomal protein L31
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 918 total aligned reads displayed.

TTGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTA  >  CP016816/87775‑88029
                                                                                                                                   |                                                                                                                                      
ttGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑a                                                                                                                                        >  2:296885/1‑128 (MQ=255)
ttGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGCATTATTAAA‑CA‑ATCC‑‑a                                                                                                                                        >  1:108681/1‑128 (MQ=255)
ttGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAAAAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑a                                                                                                                                        <  2:597744/128‑1 (MQ=255)
 tgtgTAACAATAGTGGTATTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCAGGGAAAGTCAAATGAATATTTAGATTTTGATAAGCTGATTTAAAAGGAATATTAAG‑CA‑ATAC‑‑A‑‑‑t                                                                                                                                    >  1:1310959/1‑128 (MQ=255)
  gtgtAACAAAAGTGGTTATTGAGTTTCAAGTAAAGTTCAAATTTATAATATAATTGATATTCATGGAAAGTCAAATGAATATTTAGATAATTAATATCTTATTTAAATGGATTATTAAA‑CA‑TTCA‑‑A‑‑‑t‑‑t                                                                                                                                 >  2:2379145/1‑128 (MQ=255)
   tgtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑t                                                                                                                               >  1:323356/1‑128 (MQ=255)
    gtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑tt                                                                                                                              >  1:482051/1‑128 (MQ=255)
     tAACAAAAGTGGTTATTGATTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTATATGTATTATTAAA‑CA‑ATCA‑‑A‑‑‑t‑‑t‑ttt                                                                                                                             >  1:291063/1‑128 (MQ=255)
     tAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATAGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATCGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑tat                                                                                                                             >  1:707246/1‑126 (MQ=255)
      aaCAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑tttt                                                                                                                            >  1:1393556/1‑128 (MQ=255)
        cAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑tttttt                                                                                                                          >  2:101855/1‑128 (MQ=255)
         aaaaTTGTTTATTTAGTTGCAATTAAATTTAAAATTTATAATAAAATTTATATTAATTTAAAGTAAAATTAATATTTATATTTTTAATAGCTCATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑ttttttt                                                                                                                         <  1:204726/128‑1 (MQ=255)
         aaaaTTGGTTATTGTGTTGTAATTAAAGTTAAAAATTATAATAAAAATTATATTCATGGAAAGTCAAATTAATATTTAGTTTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑ttttttt                                                                                                                         <  2:1932954/128‑1 (MQ=255)
         aaaaGTGGTTATTGAGTTGCAAGTAAACTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGCTTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑ttttttt                                                                                                                         <  1:215461/128‑1 (MQ=255)
            aGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCA‑‑A‑‑‑t‑‑t‑tttttttttt                                                                                                                      >  1:2424120/1‑128 (MQ=255)
            aGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGATGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑attttttatt                                                                                                                      >  1:403032/1‑128 (MQ=255)
             gTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑ttttttttttt                                                                                                                     >  2:1122260/1‑128 (MQ=255)
              tGGTTATTGATTTGAAAGTAAAGTAAAAATTGATAATAAAATTGATATTCATGGAAATTAAAATTAAAATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑tttttttttttt                                                                                                                    <  1:1142096/128‑1 (MQ=255)
               ggTTTTTGTTTTGCAATTAAAGTTCAAATTTATATAAAAATTGTTTTTTATGGAATGTCAAATTAAAATTTAGATTTTGAATAGCTGATTTTAATTGTTTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑ttttttttttttt                                                                                                                   <  2:1282198/128‑1 (MQ=255)
                tttATTTTGTTGCAATTAAATTTCAAATTTTAAATAAAATTTATATTCATTGAAATTCAAATTTATATTTAGATTTTTAATAGCTGTTTTAAATTGATTATTAAA‑CA‑ATCC‑‑A‑‑‑t‑‑t‑tttttttttttttt                                                                                                                  <  2:107276/127‑2 (MQ=255)
                 ttATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGTATTATTAAA‑CA‑ATCA‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTtaa                                                                                                                 >  1:1457426/1‑128 (MQ=255)
                 ttATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTAAAATTGATTATTAAA‑CA‑ATAC‑‑A‑‑‑t‑‑t‑tattattttttaaaa                                                                                                                 >  1:1693053/1‑124 (MQ=255)
                    ttGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTTATTTAAATGGATTATTAAA‑CA‑ATCA‑‑A‑‑‑t‑‑a‑tttttttttttttttaat                                                                                                              >  1:1622695/1‑123 (MQ=255)
                    ttGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTttatta                                                                                                              >  1:1897926/1‑126 (MQ=255)
                     tGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTtaataa                                                                                                              >  1:2339253/1‑128 (MQ=255)
                     tGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTtaataa                                                                                                              >  2:2330523/1‑128 (MQ=255)
                      gAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGGATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATaaa                                                                                                             >  1:1276681/1‑128 (MQ=255)
                       ttttgtcattAAAGTTCAAATTTTAATTAAAATTTAAATTCATGTAAATTCAAATTAATATTTATATTTTTATTATCTGATTTAAATGGATTATTTAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATaaaa                                                                                                            <  1:1598538/119‑1 (MQ=255)
                       aGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTTATaaaaa                                                                                                           >  2:867759/1‑128 (MQ=255)
                        gTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCA‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATaaaaa                                                                                                           >  1:1983833/1‑128 (MQ=255)
                               gTAAATTTTAAATTGATAATAAATTTTTTATTCATTGAATTTCAAATTAATATTTAGATTTTGAATTGCTTATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTcac                                                                                                    <  2:1162944/128‑1 (MQ=255)
                               gTAAAGTTCAAATTTATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTTATTTAAATGGATTATTAAA‑AA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTcac                                                                                                    <  2:1488590/128‑1 (MQ=255)
                                taacatacAAATTGTATATAAACTTGTTCTTCATGGTAAGGCAAATGAAAATTTTGTTTTTGTAAAGCTCATTTAAATGGATTATTAAA‑CC‑ATCC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTcac                                                                                                    <  2:271080/121‑1 (MQ=255)
                                  taGTTGAAATTGATAATAAAATTTTAATTCTTGGAAAGTCAAATTAATATTTAGTTTTTTAATATCTGATTTAAATGGATTATTAAA‑CA‑ATAC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATa                                                                                                 <  1:1489059/127‑1 (MQ=255)
                                    ttttaaaTTTATAATAAAATTTATATTCTTTGAATTTCAAATTAATATTTTGATTTTTAATATCTTATTTAAATGGATTTTTTAA‑AA‑AACC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAg                                                                                               <  1:679524/124‑1 (MQ=255)
                                      tCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGa                                                                                            >  1:2065876/1‑128 (MQ=255)
                                       cAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATAATCAAATaaataat                                                                                           >  2:824884/1‑123 (MQ=255)
                                         aaTTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTATTAAAAAGAATAACATaatttatta                                                                                         >  1:1431747/1‑121 (MQ=255)
                                          aTTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑TTCCATA‑‑‑T‑‑T‑TTTTTTTTTTTTTATTAAAAGGAATCACATAAGttatg                                                                                          >  2:1670563/1‑124 (MQ=255)
                                              ataataAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCA‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATACAAACAAAATTAAATCAAta                                                                                     >  1:540038/1‑127 (MQ=255)
                                                aataaAATTTAAATTAATTGAAAGTCATATTAATATTTTGATTTTTAATATCTTATTTAAATGGATTATTAAA‑AA‑ATAC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCg                                                                                 <  2:396658/128‑1 (MQ=255)
                                                aataaAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATAAAAAAATAATTGATTCAAt‑ta                                                                                   >  1:508363/1‑127 (MQ=255)
                                                  taaAATTGATATTCATTGAAAGTCAAAATAATATTTAGATTTTGAATAGATGATTTAAATGGATTATTAAA‑AA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGat                                                                               <  1:617277/128‑1 (MQ=255)
                                                     aaaagATAATCATGTAAAATTATAATAAAATTTATATTTTGAATTTTTGTTTTAAATTGATTATTAAA‑AATAAAA‑‑T‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAATTGAGTCAAT‑TGCGatta                                                                             <  1:981161/124‑1 (MQ=255)
                                                      aTTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTAACATAAGTGAGTAAAT‑TGCGattat                                                                            >  1:2297195/1‑128 (MQ=255)
                                                      aTTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑TATTTTTTTATTTTTAATAAAAATACTAAAATAAATTAGTCAAA‑TGAtattat                                                                            >  1:660879/1‑128 (MQ=255)
                                                      aTTGATATTAATTTTAAGTAAAATTAATATTTATATTTTTAATATCTGATTTAAATTTATTATTAAA‑AA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGattat                                                                            <  2:1885284/128‑1 (MQ=255)
                                                          atatTAATTGTAACTAAAATGTAAATTTTTTTTTTTTATATCTGTTTTAAATGGATTATTAAA‑AA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATttaa                                                                        <  1:1838689/128‑1 (MQ=255)
                                                           ttatCATGTAAAATGAAATGAAAATTTATATTTTGTAAATCTGATTTAAATTGATTATTAAA‑AA‑ATAC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATttaat                                                                       <  2:928004/125‑1 (MQ=255)
                                                            atTAATGGAAAGTCAAATGAATATTTATATTTTTAATAGATTATTTAAATGGATTATTTAA‑AA‑ATCA‑‑A‑‑‑TTAT‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATttaat                                                                       <  1:1198846/128‑1 (MQ=255)
                                                              tCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTTATAAAAAGAAACACATAAGGGAGAAAAT‑TGCCATAATttaatattt                                                                   >  2:1327307/1‑124 (MQ=255)
                                                               cATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATACTAAAAAAATAGAGTAAAT‑TTATATTATtaaataata                                                                   >  2:1767191/1‑127 (MQ=255)
                                                               cATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAAACTCCAATAAGTGACTCATT‑TGCGATTTTttaattata                                                                   >  2:2221321/1‑127 (MQ=255)
                                                                 tGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCAAATAAGTGAGTCAAT‑TGCTATTATttaattattatt                                                                >  1:2218501/1‑126 (MQ=255)
                                                                    aaaGTCAATTGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑AT‑C‑‑A‑‑‑A‑‑T‑TTTTTTTTTTTTTAATAAAAATACTCACATAATTGTGAAAAA‑TGCTATTTTtaaattattattttat                                                            >  2:1243452/1‑125 (MQ=255)
                                                                        ttatattaaTATTTAGATTTTGAATTTATTTTTTAAATGGATTATTAAA‑AA‑ATCC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTc                                                           <  2:642080/121‑1 (MQ=255)
                                                                        tCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTAATTCAAT‑TGCGATTATTTTATTATTAATTATTCtt                                                         >  2:497349/1‑128 (MQ=255)
                                                                           aaTGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATAATAACATAATTAAATAAAT‑TTATATTATTTAATTATTATTTAATAtttt                                                       >  1:799884/1‑127 (MQ=255)
                                                                            aTGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTAACATAAGTTATTCAAT‑TGCGATTATTTAATTATTAATTATAATTtg                                                       >  1:738465/1‑128 (MQ=255)
                                                                             tGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATACTCAAATAAGTTAGAAAAT‑TGCGTTTATTTAATTATTAATTATTATTtga                                                      >  2:2050350/1‑128 (MQ=255)
                                                                              gAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACAAAAATAATTGAGTAAAT‑TGAGATTATTTAATTATTAATTATTATTttatta                                                   >  2:1203376/1‑126 (MQ=255)
                                                                               tatatTTTTATTTTGAATATCTGATTTAAATTGATTATTAAA‑AA‑ATTC‑‑A‑‑‑‑‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAAc                                                 <  2:750215/127‑1 (MQ=255)
                                                                                  atttttaTTTTGAATATCTTATTTAAATTGATTATTAAA‑CA‑ATAC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAAc                                                 <  1:2464055/122‑1 (MQ=255)
                                                                                  atTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACAAAAATATTTGAGACAAT‑TGCGAATATTAAATTATTAATTATTATTtgaataaat                                                >  2:154194/1‑122 (MQ=255)
                                                                                    ttAGATTTTGAATAGCTTAATTAAATTGATTATTAAACCA‑TTCT‑‑T‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                              <  1:1348186/128‑1 (MQ=255)
                                                                                    ttACATTTTTAATACCTGATTTAAATGGATTATTAAA‑CA‑ATAC‑‑A‑‑‑A‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATAAATTATTCTTTGATGAACTAtt                                             <  2:182517/128‑1 (MQ=255)
                                                                                     tAGATTTTTAATATGTTTATTAAATGGTTTATTAAA‑AA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTAtt                                             <  1:186376/128‑1 (MQ=255)
                                                                                     tAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATAATCACATAATTTAGTAAAT‑ATCTATTATATAATTAATAATTATTATTTTATTaaaaat                                              >  1:1008216/1‑124 (MQ=255)
                                                                                     tAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATAAAAAAATAAATGAGTAAAT‑TTAAATTATTTAATTTTTAAATATTAATTAATAAAATAtt                                             >  1:437023/1‑128 (MQ=255)
                                                                                      attttttGAATAGCTTAATTAAAATGCTAATAAAACCA‑ACCC‑‑T‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACAAttt                                            <  2:565443/125‑1 (MQ=255)
                                                                                      aGATTTTTAAAAGCTGTTTTAAATGGTTTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTAttt                                            <  2:2110542/128‑1 (MQ=255)
                                                                                      aGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAAACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTATTTTATGAAATAtt                                             >  1:2008081/1‑128 (MQ=255)
                                                                                         ttttGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAAAATAAAATAATTTAGTAAAT‑TGATATTATTTAATTTTTATTTATTATTTTATTAAATTTTTAcat                                        >  1:1643886/1‑126 (MQ=255)
                                                                                             ttattgattaTTTAAATTGATTATTAAA‑AA‑ATAC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttc                                     <  1:1532627/119‑1 (MQ=255)
                                                                                             gAATAGATGATTTAAATGGATTATTAAA‑AA‑ATCA‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATAAT‑AAAAAATTTATTTAATATTCAATTATTTAATTATTAATTATTATTTAATAAAATATTAAcatat                                      >  1:846334/1‑124 (MQ=255)
                                                                                               aTAGCTGATTTAAATGGTTTATTTAA‑AA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCAAATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttctt                                   <  1:1029793/128‑1 (MQ=255)
                                                                                                 tatttaTTAAAATGTTTTTTTAAA‑AA‑TACA‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAg                                <  2:2263485/123‑1 (MQ=255)
                                                                                                  tcttaTTTAAATTGATTATTAAA‑AA‑ATAC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAg                                <  1:1750176/124‑1 (MQ=255)
                                                                                                  gCTGATTTATATTGTTTTTTATT‑TA‑ATTA‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGAATCACTTAAGTGAGTCAAT‑TGCGATTATTTAATTTTTTATTATTCTTTGATGAACTATTTACCTTTCTTTAgg                               <  2:140183/128‑1 (MQ=255)
                                                                                                    ttaTTTAAATGGTTTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGt                              <  1:915606/126‑1 (MQ=255)
                                                                                                      aTTTAAATGGATTATTAAA‑CA‑ATCC‑‑ATTTT‑‑T‑TTTTTTTTTTTTTAATAAAAATAATCAAATATTTGAGTCTAT‑TGGGATTATTTATTTTTTAATTATTGTTTTATTAAGTATTTACgtttattttgtt                              >  1:2187671/1‑124 (MQ=255)
                                                                                                      aTTTAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCAGAAAATTGATTCAAT‑TGCGATTATTTATTTATTATTTATTATTTGATTAACTATTTAACTTTATTTAGGtta                            >  1:563364/1‑126 (MQ=255)
                                                                                                       tttAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTTAGTAAAT‑TGAGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACATTTATTTAGGTAAc                           >  1:1928095/1‑128 (MQ=255)
                                                                                                       tttAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAAc                           >  1:366121/1‑128 (MQ=255)
                                                                                                       tttAAATGGATTATTAAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCAAATAAGTAAGTCAAT‑TGCGTTTTTTTAATTATATATATTTGTTTGATGATATATTTACCTTTATTAAGTTaaa                           >  2:228568/1‑127 (MQ=255)
                                                                                                          aaaTGGATTATTAAA‑CA‑AACC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACtaa                        <  1:1243772/128‑1 (MQ=255)
                                                                                                           aaTGGATTATTAAA‑CA‑ATCC‑‑ATT‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAAAAACAAAAATGTTAGAAAAT‑TGCAATTATTAAATTATAATTTTTATTTTGATTAAATATTAACATTAAATTATGTAAAtaa                        >  2:714235/1‑128 (MQ=255)
                                                                                                             tGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAAACACACATAATTGAGTAAAT‑TGGGATTATTTTATTTTTAATTATTAGTTGTTTATATATTTACATTTGTTTTGTTATCtattttt                    >  2:2171430/1‑126 (MQ=255)
                                                                                                               ttttattaAA‑AA‑ATTA‑‑T‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGATTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTaattaatt                  <  2:1722983/126‑1 (MQ=255)
                                                                                                                 ttattaAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTTTTTAATTATTAATTATTATTTGATGAAATATTTACCTTTCTTTAGGTAAATAATTAATTAc                >  2:333846/1‑128 (MQ=255)
                                                                                                                  tattaAA‑CA‑ATAC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTAc                <  1:879022/128‑1 (MQ=255)
                                                                                                                   tgtttaata‑aTCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACACCCATAGGGGAGGCAAT‑TGCGTTTTTTTATTTTTTAATTATTATTTGATGAACTTTTTCCCTTTCTTTAGGTATCTATTTATTTAc                >  1:177596/9‑128 (MQ=255)
                                                                                                                    ttaAA‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCTATTATTTAATTTTTAATTATTCTTTGATGAACTATTTACCTTTAATTAGGTAACTAATTATTTACCt              >  2:2013089/1‑128 (MQ=255)
                                                                                                                     taAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACACACATAAGGGAGTAAAT‑TGCGTTAATTTAATTATTAATTTTTATTTGATGAACTATTTACAATTCTTTACGTTACTAATTAATTACCTaa            >  2:1370643/1‑128 (MQ=255)
                                                                                                                      taa‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAat           <  1:2264030/127‑1 (MQ=255)
                                                                                                                      aaa‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACACACATAAGTGATTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTTATTAACTATTTAACTTTATTTAGGTAACTAATTAATTAcaaaa            >  2:1605905/1‑124 (MQ=255)
                                                                                                                       aa‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAATAAACAAATAATTGATTAAAT‑TGCAATTATTTAATTATTAAATATAATTTTATTAAATATTTACATTAATTTAGTTAAAAAATTAATAACATAat           >  2:1220523/1‑128 (MQ=255)
                                                                                                                        a‑CA‑ATCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGAGAGTCAAT‑TGCGATAATTTATTTATTATTTTTTAGTTGATGAACTTGTTCCGTTTCTTTAGGTAACTATTTATTTAcgaaatt          >  2:442958/1‑122 (MQ=255)
                                                                                                                          atataatata‑‑‑T‑‑T‑TTTTTTTTTTATTTATAAAATGACTCTCATAAGATAGTCTAT‑TGCTATTTTTTTATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGTTAACTAATTAATTACCTAat           <  1:759404/119‑1 (MQ=255)
                                                                                                                             aTCC‑‑AT‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGAATCACATAAGTTTGTAATT‑TGCGATTATTTAATTATTAATTATTCTTTGATTAACTTTTTACGTGTATTTAGGAACCTACTAAATTACATAAtatta       >  2:2412943/1‑128 (MQ=255)
                                                                                                                                   |                                                                                                                                      
TTGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAA‑CA‑ATCC‑‑A‑‑‑T‑‑T‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAT‑TGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTA  >  CP016816/87775‑88029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.