New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 437880303 (0.340)255 (0.230)
+ATAT		 70/188 11.0 38.4% intergenic (‑184/+238) JCVSYN2_01985/JCVSYN2_01990 glycosyl transferase/ABC transporter permease
?CP016816 437881 = 455 (0.400)intergenic (‑185/+237) JCVSYN2_01985/JCVSYN2_01990 glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 740 total aligned reads displayed.

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437753‑438008
                                                                                                                                      |                                                                                                                                     
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑a                                                                                                                                       >  1:897548/1‑128 (MQ=255)
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑a                                                                                                                                       >  2:2248225/1‑128 (MQ=255)
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑a                                                                                                                                       >  2:239843/1‑128 (MQ=255)
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑a                                                                                                                                       >  2:2090959/1‑128 (MQ=255)
  aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑at                                                                                                                                      >  2:817213/1‑128 (MQ=255)
      ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATAAAGCAAAGCAAAAACATCCATATAACCTATACAGTTAAT‑‑G‑‑‑‑atatat                                                                                                                                  >  2:572539/1‑128 (MQ=255)
        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAACTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAACACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatat                                                                                                                                >  2:1877591/1‑128 (MQ=255)
         tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatata                                                                                                                               >  1:1653600/1‑128 (MQ=255)
          ttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatat                                                                                                                              >  1:2183327/1‑128 (MQ=255)
            ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatat                                                                                                                            >  2:2076796/1‑128 (MQ=255)
            ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatat                                                                                                                            >  2:1145822/1‑128 (MQ=255)
             tGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatata                                                                                                                           >  1:1558151/1‑128 (MQ=255)
                aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑t                                                                                                                      >  1:1830043/1‑128 (MQ=255)
                 gTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑ta                                                                                                                     >  2:37563/1‑128 (MQ=255)
                    gtttgTTTAATTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGAAAACCAAAAACCTCAATATTACCTATAGAGTTAAA‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑at                                                                                                                <  2:1681802/124‑1 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑at                                                                                                                >  2:1990701/1‑128 (MQ=255)
                      aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATATCCTATAGAGTAAAT‑‑G‑‑‑‑atatatatttatata‑‑tat‑‑ataa                                                                                                              >  2:1919907/1‑127 (MQ=255)
                       aGTTTCATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑atata                                                                                                             <  2:1746122/128‑1 (MQ=255)
                          ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAAACTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑atatat‑‑at                                                                                                        <  1:193295/128‑1 (MQ=255)
                           tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑atatat‑‑ata                                                                                                       >  1:213997/1‑128 (MQ=255)
                            aaTTTTTAATATATATAAGATATAAAAATTGTATTTTTAAAAAAAATATTTTATGAAATGAAGAAAATAAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑atatat‑‑atat                                                                                                      <  2:291421/127‑1 (MQ=255)
                             aTTTTTAATAAATATTATAAATAAAAATTTTTTTTTTAAAATAAATATATTATTATATGTATCAAACCAAAAAACACAATATTACATATATAGATAAT‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑atatat‑‑atata                                                                                                     <  2:1380928/128‑2 (MQ=255)
                              tttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGc                                                                                                    <  1:1363196/128‑1 (MQ=255)
                                 ttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑atatat‑‑atatatata                                                                                                 >  2:2125625/1‑123 (MQ=255)
                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata‑‑tat‑‑atatat‑‑attcaagcga                                                                                                >  2:702562/1‑120 (MQ=255)
                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGc                                                                                                >  1:200516/1‑128 (MQ=255)
                                   aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCg                                                                                               >  2:794991/1‑128 (MQ=255)
                                    ataaataTTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAAGAAAAAAACTCCATATTACCTATAGAGTTAAT‑‑T‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGa                                                                                              <  1:1798816/128‑1 (MQ=255)
                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCa                                                                                           >  1:1474269/1‑128 (MQ=255)
                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCa                                                                                           >  1:647092/1‑128 (MQ=255)
                                       aaatttATAAATAAAAATTTTTTTTTTAATATATATATTTTATTAATTGAATAATATAAAAAATCTCTATATAAAATATAGAGATAAT‑‑G‑‑‑‑‑T‑TATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGc                                                                                         <  1:1976414/124‑1 (MQ=255)
                                        atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCa                                                                                        <  1:1526426/128‑1 (MQ=255)
                                           ttATAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAATAAAACCAAAAAACTCTATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGc                                                                                         <  2:2323985/128‑1 (MQ=255)
                                           ttAGAAATAAAAATTGTATTTTAAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGAGATAACCATaa                                                                                     >  1:306831/1‑128 (MQ=255)
                                               aaaTAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAATAAAATAAAAAACATACATATTAAATATATAGTTAAT‑‑T‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATaaaa                                                                                   <  2:1968891/128‑1 (MQ=255)
                                               aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATATAAATATGCAAGCTATCAGAATaa                                                                                     >  2:2029772/1‑128 (MQ=255)
                                                 attaaaaTTTTATTTTTAAAATAAATATTTTAGTAAATTAATCAAAGAAAAAACCTACATATTAACTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATaaaa                                                                                   <  2:413561/125‑1 (MQ=255)
                                                  tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCTATCAGCATAAAATgg                                                                                >  1:999826/1‑128 (MQ=255)
                                                    aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGAAAGCGATCAGCATAAAAtcttg                                                                              >  1:1716963/1‑124 (MQ=255)
                                                    aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATAAAAGCGATCAGAATAAAATtgtg                                                                              >  2:1499014/1‑128 (MQ=255)
                                                    aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATAATAAATCTATCATCATAAAAttgat                                                                              >  1:1882749/1‑124 (MQ=255)
                                                      aaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGATTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGAAAGCGATCAGAATAAAATTGTGag                                                                            >  1:597289/1‑127 (MQ=255)
                                                        ttGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                          <  2:1528461/128‑1 (MQ=255)
                                                         tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTa                                                                       >  1:1061454/1‑128 (MQ=255)
                                                          ttATTTTTTTAATAAATATTTTTTGTAATGTTTCAAATCTAAAAAATCTATATTTACTATAGAGTTATTTAT‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                          <  2:966765/127‑1 (MQ=255)
                                                          ttATTTTTAAAATAAATATTTTAGTAAATTAAGAAAAGAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑‑‑TATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGAGCAGCATAAAATGGTGAAATTTAg                                                                      <  1:249467/127‑1 (MQ=255)
                                                            atatttAAAATAAATATTTTATGAAATTAATCAAATAAAAAAACTCAATATTAACTATATATTTAATTAT‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAAttt                                                                        <  1:2298100/125‑1 (MQ=255)
                                                            aTTTTTAAAATAAATATTTTAGTAAATGAATCAAAGAAAAAACCTCAATATTACCTATAGAGTTAAT‑‑T‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAg                                                                      <  1:222177/128‑1 (MQ=255)
                                                            aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TATAAATATAT‑‑ATATCAAAGCGATAATCAAAAAATTGAGAAAttt                                                                        >  1:1150964/1‑128 (MQ=255)
                                                             tttttAAAATATATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑AAAAGAAAGAGATCATAATAAATTGGTTAAATTTata                                                                     >  1:550893/1‑126 (MQ=255)
                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATTCAAGCGATCAGCATAAAATTGTGTAATTTAGATCTg                                                                 >  1:1612011/1‑128 (MQ=255)
                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGAAAGAGATCAGCATAAAATTGTGAAATTTAGATCTg                                                                 >  2:896078/1‑128 (MQ=255)
                                                                  aaaaTAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGa                                                                <  1:2087715/128‑1 (MQ=255)
                                                                   aaataaatATTTTATCAAATGAAGCAAAGCAAAAACTTACATATTAAGTATAGAGATAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGAGCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  2:926961/128‑1 (MQ=255)
                                                                   aaataaatATTTTAGTAAATGAATAAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  1:355408/128‑1 (MQ=255)
                                                                   aaataaatATTTTAGGAAATTAAGAAAATAAAAAACCTCAATATTACCTATAGAGATAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  1:724351/128‑1 (MQ=255)
                                                                   aaataaatATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               >  1:76216/1‑128 (MQ=255)
                                                                      tatatatTTTAGGTAATGAAGCTAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑T‑‑‑‑ATATATATATATATATTTAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt                                                              <  1:840237/125‑1 (MQ=255)
                                                                         atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCTATCAGCATAAAATGTTGAAATTTAGATCTGAGtt                                                             >  1:1195430/1‑128 (MQ=255)
                                                                            ttttATGATATGAAGCAAAGATAATACCTACATATTATCTATAGATTTAA‑‑‑‑‑‑‑‑AGATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                    <  1:2346392/128‑1 (MQ=255)
                                                                             tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCTAGCTATCAAAATAATTTTGTGATATATATATCTGAGTTTGtataat                                                     >  2:5055/1‑123 (MQ=255)
                                                                               tAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAttt                                                 <  1:1410837/128‑1 (MQ=255)
                                                                                aGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAATCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAAtt                                                  >  1:948145/1‑128 (MQ=255)
                                                                                 ggAAATGAAGCAAAGCAAAAACCTCCATATAACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCTTAAAATGGTGAAATTTAGATCTGAGATGGTCTTAAATTTGt                                               >  1:390925/1‑128 (MQ=255)
                                                                                   aaaTGAATCAAAGAAAAAACCTCCATATTAACTATAGATTTATT‑‑T‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                               <  2:2178432/128‑1 (MQ=255)
                                                                                    aaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑AT‑T‑AAAGATATCATAATAAAATGGTGATATTTAGATCTGAGTTGGTCTTAAATTTTTAGt                                            >  2:53209/1‑128 (MQ=255)
                                                                                       gAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGAAAGCGATCAGCATAAAATGTTGAAATTTAGATATGAGTTTGTGTTAAATTTGTAGtt                                           >  1:1275830/1‑128 (MQ=255)
                                                                                            aaagaaaaAACATAAATATTAAATATATAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑‑‑‑T‑CAAGCGATCAGCTTAAAATTGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTAGTTTttatttat                                  <  2:171774/128‑1 (MQ=255)
                                                                                                caaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑AT‑T‑CAAGCGATCTCCATATAATTGTGAAATTTATATATGAGTTTGTCTTATATTTTTAGTTTTTATATATAg                                >  1:799210/1‑128 (MQ=255)
                                                                                                     aCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCTATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGTTCTTAAATTTGTAGTTTTTATTTATAGttt                             >  1:1004217/1‑128 (MQ=255)
                                                                                                      ccTCTATATTATCTATAGATTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                          <  2:1113687/128‑1 (MQ=255)
                                                                                                      ccTCCATATTATCTATAGAGATAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTta                            <  2:2469883/128‑1 (MQ=255)
                                                                                                       cTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTAATATTTTTAGTTTTTATTtatattatat                           >  2:1837866/1‑128 (MQ=255)
                                                                                                       atacatattttatataGAGTTAAT‑‑T‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  1:2406282/116‑1 (MQ=255)
                                                                                                        tCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATAAATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                          <  2:1181571/128‑1 (MQ=255)
                                                                                                         ccATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                       <  2:728399/128‑1 (MQ=255)
                                                                                                          cATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCACGCTATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaaa                        >  1:1913606/1‑128 (MQ=255)
                                                                                                           atatTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATATAGCTCTGAGTTGGTCTTAAATGTGTAGTTTTTATTTATATTTtatat                         >  1:1344298/1‑127 (MQ=255)
                                                                                                           atatTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGAAAGCGATCAGAATAAAATTTTGAAATTTATATCTGAGATGGTCTTATAGTGTGAGGTTTTATTTATAGttttgaata                       >  1:1022031/1‑122 (MQ=255)
                                                                                                           atatTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGAAAGCGATCAGAATAATATGGTGAAATTTAGATCTGAGTTGGTATTAAATTTGTAGTTTTTATTTATAGTTTATAAATTtat                   >  1:1697303/1‑127 (MQ=255)
                                                                                                            tatTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                    <  1:2452692/128‑1 (MQ=255)
                                                                                                              ttACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATTGTGATATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                    >  2:839416/1‑128 (MQ=255)
                                                                                                              ttACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGAAAGCTCTCATCAAAAAATTGTTAAATTTATATCTGTGTTTGTATTAAATTTTTAGTTTTTATTTATATTTTATATATTtaat                  >  1:689378/1‑128 (MQ=255)
                                                                                                              ttACATATATAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                    <  2:1204087/128‑1 (MQ=255)
                                                                                                               tACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGAACAGCATAAAATTGAGATATATAGATCAGAGTTTCACATATATTTGTAGTTTTAATTTATAGTTAATATAGAtat                   >  1:489988/1‑127 (MQ=255)
                                                                                                                 ccTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATTCAAGCGCTCAGCATAAAATGGAGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGATTTTATTTATAGTTTATaaattatatt                 >  2:1319568/1‑121 (MQ=255)
                                                                                                                    ataGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTATTTTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa            >  2:1042416/1‑128 (MQ=255)
                                                                                                                      agagTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGAGATCAGCATAAAATGGTGAAATTTATATCTGAGTTGGTATTATATTTGTAGTTTTTATTTATATTTTATAAAGTTAATAATTTa            >  2:444809/1‑128 (MQ=255)
                                                                                                                       gagTTAAT‑‑GAT‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGAATAAAATTGTGAAATTTATATCTGAGTTGGTATTAAATTTGTATTTTTTATTTATAGTTTATAAATTTAATAAttt             >  2:1443227/1‑128 (MQ=255)
                                                                                                                        agTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAATTTCTAGTTTATATTTATAGTTTATAAAATTAATAATTTAGa          >  1:1743500/1‑128 (MQ=255)
                                                                                                                        agTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGa          <  2:1365619/128‑1 (MQ=255)
                                                                                                                        agTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGa          <  2:1472042/128‑1 (MQ=255)
                                                                                                                           tAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttt       <  1:2050224/128‑1 (MQ=255)
                                                                                                                            aaT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtttt      <  1:977404/128‑1 (MQ=255)
                                                                                                                            aaT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtttt      <  1:514504/128‑1 (MQ=255)
                                                                                                                             atgatatatatatatatatatata‑‑tat‑‑atatat‑‑atatGCTAGATATCAGAATAATATTGTGAAATTTAGATATGTGTTTGTATTAAATTTTTTGTTTTTATTTATTGTTTATAAATTTAATAATTTat           >  1:1097063/10‑127 (MQ=19)
                                                                                                                             aT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCTAACATCATAAAATGGTTAAATTTAGATCTGAGTTTGTCTTAAATTTCTATTTTATATTTATAGTATATAAATATAATAATTTACAttttt     >  2:1659602/1‑128 (MQ=255)
                                                                                                                                   tatatatatatatatata‑‑tat‑‑atatat‑‑atatTCAAGCTATCATCATAAAATGGTTAAATTTAGATCTGAGTTGGTCTTAAATATGTAGTTTTTATTTATAGTTTATATAGTTAATAATTTAGAttttt     >  2:1592588/4‑128 (MQ=255)
                                                                                                                                     tatatatatatatata‑‑tat‑‑atatat‑‑atatTAAAGCGATCAGCATAAAATGGTGAAATTTATATCTGAGTTTGTATTAAATTTTTAGTTTTTATTTATATTTTATAAATTTAATAATTTATATTTTTaa   >  2:664176/2‑128 (MQ=255)
                                                                                                                                     tatatatatatatata‑‑tat‑‑atatat‑‑atatACAATCGATCAGCATAAAATGGAGATATATATATCTGAGTTTCTCTTAAATATTTATTTTATATATATAGTTTATAAATTTAATAATTTATAtttttta   >  2:1940854/2‑126 (MQ=255)
                                                                                                                                      |                                                                                                                                     
TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATA‑‑TAT‑‑ATATAT‑‑ATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437753‑438008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.