New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486160 (0.080)311 (0.150) 82/252 27.0 64.3% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 186 (0.090)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 409 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAA  >  CP016816/202359‑202609
                                                                                                                                |                                                                                                                            
attttttgtAAATAATAGAGTTAATGTTAATTAAAATTCCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                              <  1:1068333/122‑1 (MQ=255)
aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAAAAACATAAACTTAATAATTCATATAATCTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                              <  2:4301270/128‑1 (MQ=255)
          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATACTATATATATATTTTATTAATTTTTTATATTCACAAATAAAAAAAAAACAATACCAttaaaaattaaa                                                                                                                    >  2:92315/1‑118 (MQ=255)
          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCAttaaaaattaaa                                                                                                                    >  2:365328/1‑118 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAATCTTAATAATTCTTATTATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCACCttaaaaatttaaa                                                                                                                   >  1:2921265/1‑117 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑Ttaaaaattaaaa                                                                                                                >  2:3878536/1‑128 (MQ=255)
             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑AAtaaaaaataaaaaa                                                                                                              >  2:4222208/1‑128 (MQ=255)
               taatgttttgtttaattaaAATTAAAAAAAATTTATTATTATTTTAATGTATTTCACTGTTTTATATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAACAATCCCCTTT‑‑AAAATTaaaaaaaa                                                                                                            <  1:3528670/117‑1 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAACCCCTT‑‑‑AAAAATaaaaaaaa                                                                                                            >  1:4619350/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑‑TAAAAAATaaaaaaaaa                                                                                                           >  1:454185/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCCAT‑‑‑AAAAATaaaaaaaaa                                                                                                           >  1:2305137/1‑128 (MQ=255)
                 aagTTAAGGTTAATTAAAAAACCAAAAAAAAAAAAAATAATAAAATTTAACTCCTCGTTTTCTATTTTTTTATTTTTTTATCTTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAAATaaaaaaaaaa                                                                                                          <  2:4259400/127‑1 (MQ=255)
                  agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaa                                                                                                         >  1:3670262/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                        >  1:3503286/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCACCTT‑‑‑AAAAATaaaaaaaaaaaaa                                                                                                       >  2:3453644/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACCAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                      >  2:3507753/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCC‑‑TTAAAAAATaaaaaaaaaaaaaa                                                                                                      >  1:3786196/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAACAAACCAAAT‑‑AAAAATaaaaaaaaaaaaaaa                                                                                                     >  2:4114121/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAACAAAAAAATTAAAAATTaaaaaaaaaaaaaa                                                                                                      >  2:2666201/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑ATAAAAATTaaaaaaaaaaaaaaa                                                                                                     >  1:1806747/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                     >  1:3933503/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                     >  1:3025590/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                     >  1:3468254/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                     >  1:4221164/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAAAAAAAACCATaaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:2354556/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑‑TAAAAAATtaaaaaaaaaaaaaaa                                                                                                    >  1:1726380/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                    >  1:3568338/1‑128 (MQ=255)
                       agtttaatttaAAAACAATAAAAATAATAATTTTTATTATTTTGATACTTTTTTAATATTTTTTTTTTTTTTTAAAATAAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                    <  1:4164608/125‑1 (MQ=255)
                       aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAAAAAAACCC‑‑TTAAAAAATaaaaaaaaaaaaaaaa                                                                                                    >  1:1014407/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                    >  1:3868150/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGAGATCAATTATTTAAAATAATAAAAATCAAAAATAAAAAAAAAAACAAAACCaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:2822810/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTATTTATCTTCACAAATAAAAAAAAAAACAAACAC‑‑AAAAAAAATtaaaaaaaaaaaaaaaa                                                                                                   >  1:540409/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                  >  2:470120/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTTTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:324255/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAAATTAAAAATTATTATAATTTATATACTCGTGATCTATTTTTTATTTTTTTATCTTCAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaa                                                                                                 <  2:1446334/128‑1 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:411771/1‑128 (MQ=255)
                            tattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTTATCTTCACAAATAAAAAAAAAACAAAACCC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:303047/2‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTAATTGAATATCATCAAAAATAAAAAAAAAAAAATCAC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:1332652/1‑127 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:3809202/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:4026748/1‑127 (MQ=255)
                              ttaaAATAAAATAAAAATAATAATTATTATAATTTTTATAATATTTATAATTTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAAAATTTAAAAAAAAAAAAAAAAAAAACt                                                                                             <  2:183040/128‑1 (MQ=255)
                                ttaaaaaaaTAAAATTATAAATTTTTAAAATTTATATAATAGTTATATATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAAAAAACCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaaa                                                                                          <  2:1914812/120‑1 (MQ=255)
                                aaaaaaACAAAAACTTAAAAATTTTTAAATATTATATACTCTTTTTATTTTTTTTTTTTTTTTTAATTTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAACTaaa                                                                                          <  1:3851820/128‑1 (MQ=255)
                                 aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:4352252/1‑123 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTAACTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  2:2468215/1‑128 (MQ=255)
                                      gcaaaaaattaaaaattaTTAAAATTTATATCCACGTTATATATTTTTTTATTTTTTTAAATACAAAAAAAAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                      <  2:2402113/124‑1 (MQ=255)
                                      caaTAAAATTAAAAATTATTATAATTTTTATTATTGTTTTTTATTTTTTTATTTGTTTATATTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                     <  1:3745850/126‑1 (MQ=255)
                                      acATAAAATTAATAATTCTTATAATTTTTATACTATTTTTATTTTTTTTTATTTTTTTTTCTTAAAAAATAAAAAAAAAACAATCTCATT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                 <  1:4087675/127‑1 (MQ=255)
                                      aaaaaaaaattataatTATTATAATTTTTATACCCCTTATATATTTTATTATTTTTTTATATTCAAAAAAAAAAAAAAAAAAAACCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                      <  1:2404818/117‑1 (MQ=255)
                                      aaaaaaaaTTAAAAATTTTTATAATTTTTATCATATTTTTATATTTTTTTTTTTTTTTTTATTCAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                      <  1:1654674/124‑1 (MQ=255)
                                       cATAAACTTAATAAGTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTACAAATTAAAAAAAAAAAAAACACAAAAAAACtcacaaa                                                                                       >  1:2349277/1‑122 (MQ=255)
                                       cATAAAATTAATAATTTTTATAAATTATAAAAACTTTTTATATTTTTTTTATTTTTTAAATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                    <  2:3952403/128‑1 (MQ=255)
                                           aaattAATAAATCATATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                <  2:3548889/125‑1 (MQ=255)
                                            aataaataatTCTTATAATTTATATACTCGTTATCTATTTTTTTTTTTTTTTATCTTAAAAAATAAAAAAAAAACAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                             <  2:1712125/124‑1 (MQ=255)
                                            aCTTTATAAATATTAAAATGAATATACTCGTTATCTATTTTTTTATTTTTTTATATTAACAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                               <  2:2091838/128‑1 (MQ=255)
                                                aaaaatTCTTAAAATTTACAACCTCTTTATCTTTTTTTTTATTTTTTTAACTTAACAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑‑TAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                      <  2:2507785/125‑1 (MQ=255)
                                                 ttaatTCTTTTAAATTATATACTCGTTATATATATTTTTATTTTTTTATTTTAACAAATAAAAAAAAAAAAATACCCTTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                          <  2:1497813/127‑1 (MQ=255)
                                                 ataaataatataATTTAGATCTTATTTATATATTTTTTTAATTTTTTAAAATCAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                           <  2:3782344/120‑1 (MQ=255)
                                                   aatTATTAAAATTTACATACTCGTTAAATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCttca                                                                       <  2:4467436/128‑3 (MQ=255)
                                                    aatattATAATTTATATCCTCGTTTTTTATTTTTTTATTTTTTTATCATCACAAAAAAAAAAAAAAAAAACCCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                         <  2:4195977/124‑1 (MQ=255)
                                                     tttatataATTTATATACTCGTTATCTTATTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                    <  2:4139324/124‑1 (MQ=255)
                                                              tGTATATCCACGTTATCTATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                             <  2:4363234/128‑1 (MQ=255)
                                                                 ttaTCCTCGTGTTATTTTTTTTTATTTTTTTAAATTAACAAAAAAAAAAAAAAAAAAACCCATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                           <  2:579645/126‑1 (MQ=255)
                                                                   ctCCTCTTTATATAATTTTTTAATTTTTTAATTTAAAAAATAAAAAAAAAACAATCCCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                         <  2:1318964/127‑1 (MQ=255)
                                                                    accccgtttaatATTTTTTAATTTGTTAAAATAAAAAAAAAAAAAAAAAAAAACCCCC‑‑‑AAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  2:1555509/117‑1 (MQ=255)
                                                                     ctctttttttatttttttaATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  1:3625606/116‑1 (MQ=255)
                                                                     cgtcggtttatttttttttATTTGTTTATATTAACAAATAAAAAAAAAACAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  1:581766/116‑1 (MQ=255)
                                                                     atattgataatATTTTTTTATATTTTATTTTTAAAAAAAAAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                        <  2:1154366/118‑1 (MQ=255)
                                                                       tctttatatATTTTTTTAATTTTTTATTATAAAAAAAAAAAAAAAAAAAATACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                    <  1:210103/120‑1 (MQ=255)
                                                                       cgtttatatATTTTTTTATATTTATATCTAAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                   <  1:983545/120‑1 (MQ=255)
                                                                       atttttaatatttttttattttttTAAATTAAAAAAAAAAAAAAAAAAAAATCCCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  2:1588635/120‑1 (MQ=255)
                                                                        tttttatatttttttttttttttTATTTTAAAAAATAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                 <  2:1627652/119‑1 (MQ=255)
                                                                         tttatatatttttttattttttTAAATAAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                  <  2:3338378/122‑1 (MQ=255)
                                                                            aTCAATTTTTTTATTTTTTTAACTTCAAAAATAAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                 <  2:4020847/128‑1 (MQ=255)
                                                                             ttattttttttatttttttaTATTAAAAAAAAAAAAAAAAAAAAATACCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                <  2:1234699/124‑1 (MQ=255)
                                                                               tatttttttattttttTATATTAACAAATAAAAAAAAAAAAATACCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                          <  2:519172/128‑1 (MQ=255)
                                                                               attttttttATTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                          <  2:81244/126‑1 (MQ=255)
                                                                               aaTTTTTTAATTTTTTTAATTACAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACattttatttt                                           <  1:3418638/127‑1 (MQ=255)
                                                                                ttttttttATTTTTTATATTAAAAAAAAAAAAAAAAAAAATTCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                         <  2:41814/127‑1 (MQ=255)
                                                                                  ttttttATTTGGTTAATAAAACAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                        <  1:4500833/128‑1 (MQ=255)
                                                                                   tttttATTTTTTAATCTTAAAAAAAAAAAAAAAAACAAAACACAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                       <  1:4394086/128‑1 (MQ=255)
                                                                                   tttatATTTTTTTATAATAAAAAAAAAAAAAAAAAAAAAACCCATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                         <  2:1097308/128‑1 (MQ=255)
                                                                                    ttttttttttttATTTTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                       <  1:1096133/128‑1 (MQ=255)
                                                                                    ttttttttttttATATTTAAAAAAAAAAAAAAAAAAAAAACATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                        <  2:454185/128‑1 (MQ=255)
                                                                                    ttttATTTTTTAAATTCAAAAATAAAAAAAAAAAAAACCAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                      <  2:2810827/128‑1 (MQ=255)
                                                                                    ttttAATAGTTTAACATAACAAAAAAAAAAAAAACAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACAATTTATTTTTaaaa                                      <  1:4245662/128‑1 (MQ=255)
                                                                                     tttATTTTTTTATATTCACAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                     <  1:2645154/128‑1 (MQ=255)
                                                                                         attttttATCTTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                 <  2:3717901/124‑1 (MQ=255)
                                                                                          ttGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAATATATTAGATAAAATTACATATTATAAAAAATTTTATTTTTAAAATAatat                                >  2:4061521/1‑128 (MQ=255)
                                                                                             atattaattaaaaaTAAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  2:2197574/117‑1 (MQ=255)
                                                                                              ttATATTAAAAAATAAAAAAAAAAAAATAAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  2:257313/128‑1 (MQ=255)
                                                                                               ttaattaaaaaaaaaaaaaaaaaaaATAACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  2:3229023/119‑1 (MQ=255)
                                                                                               tatttaaaaaaaTAAAAAAAAAAAATAATCTATAAAAATATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  1:3602353/119‑1 (MQ=255)
                                                                                               tataataacaAAAAAAAAAAAAAAAAAACC‑‑ATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  1:1588807/121‑1 (MQ=255)
                                                                                                taaatataaaaaaaaaaaaaaaaaaaaaCCCATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  1:764708/120‑1 (MQ=255)
                                                                                                atattaaaaaaTAAAAAAAAAACAAACCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  2:2010020/120‑1 (MQ=255)
                                                                                                     aaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                      <  1:3999052/125‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaATACCATTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatt                <  2:3756999/128‑2 (MQ=255)
                                                                                                              aaaaaaaaaCAAACCCATAAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                <  2:2315194/128‑1 (MQ=255)
                                                                                                                          atacactttAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat    <  2:3607524/122‑1 (MQ=255)
                                                                                                                                |                                                                                                                            
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAA  >  CP016816/202359‑202609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.