New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486160 (0.080)311 (0.150) 82/252 27.0 64.3% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 186 (0.090)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 435 total aligned reads displayed.

GTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACT  >  CP016816/202366‑202613
                                                                                                                             |                                                                                                                               
      aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑AAtaaaaaataaaaaa                                                                                                                    >  2:4222208/1‑128 (MQ=255)
        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCACC‑‑ttaaaaattaaaaata                                                                                                                   >  2:3890094/1‑126 (MQ=255)
        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTATATTCACAAAAAAAAAAAAAAAAATAAC‑‑‑ATAAAAAATaaaaaaaaa                                                                                                                 >  1:283693/1‑128 (MQ=255)
            gatAAGGATAATTAAAATACCATAAACATAATAATTCTAAAAAATAAAAACCTCGTGAACTAATTTTTAAATTGTTAATCATAACAAAAAAAAAAAAAACAAACCAC‑‑AAAAAAAATaaaaaaaaaaaa                                                                                                              >  1:3700016/3‑128 (MQ=255)
              tAATGTTTATTAAAATAAAATAAAATAAATAAATATTATAATTTATAAACTAGTTATATATTTTTTTATTTTTTTAACTTAACAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑a                                                                                                          <  2:4260329/128‑1 (MQ=255)
              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑a                                                                                                          >  1:3776911/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAACAAAAAAATTAAAAATTaaaaaaaaaaaaa‑‑a                                                                                                          >  2:2666201/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑ATAAAAATTaaaaaaaaaaaaa‑‑aa                                                                                                         >  1:1806747/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aa                                                                                                         >  1:3933503/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAAAAAAAACCATaaaaaaaaaaaaaaaaaaaaaa                                                                                                             >  2:2354556/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑‑TAAAAAATtaaaaaaaaaaaa‑‑aaa                                                                                                        >  1:1726380/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaa                                                                                                        >  1:3568338/1‑128 (MQ=255)
               aaGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aa                                                                                                         >  1:2363633/1‑128 (MQ=255)
                agtttaatttaAAAACAATAAAAATAATAATTTTTATTATTTTGATACTTTTTTAATATTTTTTTTTTTTTTTAAAATAAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaa                                                                                                        <  1:4164608/125‑1 (MQ=255)
                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAAAAAAACCC‑‑TTAAAAAATaaaaaaaaaaaaa‑‑aaa                                                                                                        >  1:1014407/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaa                                                                                                        >  1:3868150/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCAC‑‑‑TAAAAAATaaaaaaaaaaaaa‑‑aaaaa                                                                                                      >  1:351140/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaa                                                                                                       >  1:4510811/1‑128 (MQ=255)
                  tttaattaaAAAAAAATAAAATTAATAATTATTATAAATTATAATCTAGTTATCTATTTTTTTATTTTTTTTTCTTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaa                                                                                                      <  2:3600772/127‑1 (MQ=255)
                  tgtaaataaaATAACAAAAAATTAAAAAATCTTAAAATTTAGTACCACCTTATCTATTTTTTTTTTTTTTTTTATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaa                                                                                                      <  1:4000603/126‑1 (MQ=255)
                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaa                                                                                                      >  2:470120/1‑128 (MQ=255)
                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaaa                                                                                                     >  2:3717520/1‑128 (MQ=255)
                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTTTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑‑ATAAAAAATaaaaaaaaaaaaa‑‑aaaaaa                                                                                                     >  1:324255/1‑128 (MQ=255)
                  gTTAATTAAAATACCATAAAATTAAAAATTATTATAATTTATATACTCGTGATCTATTTTTTATTTTTTTATCTTCAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaaa                                                                                                     <  2:1446334/128‑1 (MQ=255)
                   ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAAAAATAAAC‑‑‑TAAAAAATtaaaaaaaaaaaa‑‑aaaaaaa                                                                                                    >  1:42117/1‑128 (MQ=255)
                    taattaaAAAAAAATAAAATTAATAATTATTATAATTTAAATCCTCGTGATAAATTTTTTTATTTGTTTATATTAACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaaac                                                                                                    <  2:4493626/128‑2 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTAATTGAATATCATCAAAAATAAAAAAAAAAAAATCAC‑‑‑ATAAAAAATaaaaaaaaaaaaa‑‑aaaaaaaaa                                                                                                  >  1:1332652/1‑127 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaaaaa                                                                                                   >  2:3809202/1‑128 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACC‑‑TAAAAAATTaaaaaaaaaaaaa‑‑aaaaaaaa                                                                                                   >  1:566975/1‑128 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTAGTTTATCATCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaataaaaaaaaaa‑‑aaaaaaaa                                                                                                   >  1:4034247/1‑128 (MQ=255)
                       ttaaAAAAAAATAAAATTAATAAATATTAAAATTTATATACTCTTTATATATTTTTTTATTTTTTTTAATTAACAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaaactaa                                                                                                 <  2:159956/128‑5 (MQ=255)
                         aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATATTTTTATATCTTCACAAATAAAAAAAAAACAATAAC‑‑ATAAAAAATTaaaaaaaaaaaaa‑‑aaaaaaaaaaaa                                                                                               >  2:2957417/1‑124 (MQ=255)
                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAAAAAT‑‑AAAAATAAAAATTaaaaaaaaaaaaa‑‑aaaaaaaaaaaaa                                                                                              >  1:2247770/1‑123 (MQ=255)
                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa‑‑aaaaaaaaaaaaa                                                                                              >  1:4352252/1‑123 (MQ=255)
                           aaTACAATAAAATTAATAATTTTTTTAATTTTTATTATTTTTTTTTTTTTTTTTATTTTTTTTTTTTAAAAAATATAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTaaaa                                                                                             <  1:671225/128‑1 (MQ=255)
                            aaaataTAAAATTAATAATTATTATAATTTATATACTCGTTTTTTATTTTTTTTTTTTTTTATTTTAAAAAATAAAAAAAAAACAATACCC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTaaaaa                                                                                            <  2:3621234/123‑1 (MQ=255)
                            aaaacATAAAAATAATAATTATTTAAATTTTTATCCTCTTGATATATTTTTTTTTTTTTTTATATTCACAAAAAAAAAAAAAAAAACCCCTTAAAAAATAAAAAAAAAAAAAAAA‑‑AAAAAAAACTaaa                                                                                              <  1:4137291/124‑1 (MQ=255)
                               gcaaaaaattaaaaattaTTAAAATTTATATCCACGTTATATATTTTTTTATTTTTTTAAATACAAAAAAAAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAA‑‑AAAAAAAACTAAaaaca                                                                                          <  2:2402113/124‑1 (MQ=255)
                               caaTAAAATTAAAAATTATTATAATTTTTATTATTGTTTTTTATTTTTTTATTTGTTTATATTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTAAaaacaa                                                                                         <  1:3745850/126‑1 (MQ=255)
                               aaaaaaaaTTAAAAATTTTTATAATTTTTATCATATTTTTATATTTTTTTTTTTTTTTTTATTCAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAAA‑‑AAAAAAAACTAAaaaca                                                                                          <  1:1654674/124‑1 (MQ=255)
                                aataaaataaaTAATTTTTTTAATTTATAACATCGTTATTTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTAAaaacaaa                                                                                        <  2:3744232/127‑1 (MQ=255)
                                aaaaaaaTTAAAAATTTTTATAATTTTTTACCTTGTTTTTTATTTTTTTATTTTTTTTATTTTAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAaaacaaac                                                                                       <  1:270471/125‑1 (MQ=255)
                                   aaaaataataaTTCTTATAATTTACATCCATGTGATATATTTTTTTATTTGTTTTTCTTCAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTa                                                                                   <  2:2469670/123‑1 (MQ=255)
                                     aataaataatTCTTATAATTTATATACTCGTTATCTATTTTTTTTTTTTTTTATCTTAAAAAATAAAAAAAAAACAATACCCTT‑‑‑AAAAATTAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTAtt                                                                                 <  2:1712125/124‑1 (MQ=255)
                                     aCTTTATAAATATTAAAATGAATATACTCGTTATCTATTTTTTTATTTTTTTATATTAACAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTa                                                                                   <  2:2091838/128‑1 (MQ=255)
                                       ttAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAACTAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAAAATAaaacaacaatcttta                                                                                >  1:2344637/1‑119 (MQ=255)
                                         tttaatTATTTTAATTTTTATCCTGTTGTTATATTTTTTTTTTTTTTTATATTTCAAAATAAAAAAAAAAAAATCCCACTTAAAAATATAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTAt                                                                                  <  1:2467065/126‑1 (MQ=255)
                                          ttaatTCTTTTAAATTATATACTCGTTATATATATTTTTATTTTTTTATTTTAACAAATAAAAAAAAAAAAATACCCTTT‑‑AAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCt                                                                              <  2:1497813/127‑1 (MQ=255)
                                          ataaataatataATTTAGATCTTATTTATATATTTTTTTAATTTTTTAAAATCAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTc                                                                               <  2:3782344/120‑1 (MQ=255)
                                             aatattATAATTTATATCCTCGTTTTTTATTTTTTTATTTTTTTATCATCACAAAAAAAAAAAAAAAAAACCCCTTAAAAAATAAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCtt                                                                             <  2:4195977/124‑1 (MQ=255)
                                              tttatataATTTATATACTCGTTATCTTATTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                        <  2:4139324/124‑1 (MQ=255)
                                              ttattATAATTTATATAATCGTTTTTTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                           <  1:3467847/125‑1 (MQ=255)
                                                           tatcatctttaTCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAATTCACTT‑‑‑AAAAATTAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                           <  2:3227201/118‑1 (MQ=255)
                                                             accccgtttaatATTTTTTAATTTGTTAAAATAAAAAAAAAAAAAAAAAAAAACCCCC‑‑‑AAAAAAATAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                          <  2:1555509/117‑1 (MQ=255)
                                                              ctctttttttatttttttaATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                          <  1:3625606/116‑1 (MQ=255)
                                                              catCGTTATATATTTTTTTTTTTTTTTATAATAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                         <  2:883503/126‑1 (MQ=255)
                                                               ctctttttattattttttttttttttAATTTAAAAAAAAAAAAAAAAAAAATCCCAATAAAAATAAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                          <  1:3837546/116‑1 (MQ=255)
                                                                   ttttatATTTTTTTTTTTGTTTTATTTAAAAAATAAAAAAAAAACAA‑‑AACTCATAAAAAAAAAAAAAATAAAAA‑‑AAAAAAAACTAAAAACCAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                     <  1:948099/123‑1 (MQ=255)
                                                                      tatatttttttattttttTAAATTAAAAAAAAAAAAAAAAAAAATACCATTAAAAATTAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                   <  2:1785856/126‑1 (MQ=255)
                                                                       atttttttttatttttttaTATTAAAAAAAAAAAAAAAAAAAATACCC‑‑ATAAAAAAT‑‑AAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                               <  2:2594563/125‑1 (MQ=255)
                                                                        tatttttttattttttTATATTAACAAATAAAAAAAAAAAAATACCATT‑‑‑AAAAATTAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                              <  2:519172/128‑1 (MQ=255)
                                                                        attttttttATTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                              <  2:81244/126‑1 (MQ=255)
                                                                        aaTTTTTTAATTTTTTTAATTACAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACattttatttt                                               <  1:3418638/127‑1 (MQ=255)
                                                                         ttttttttATTTTTTATATTAAAAAAAAAAAAAAAAAAAATTCCCTT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                             <  2:41814/127‑1 (MQ=255)
                                                                         ttttttttATTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACCCTTAAAAAATAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                               <  2:3294805/127‑1 (MQ=255)
                                                                           ttttttATTTTTTTTTTTTAAAAAATAAAAAAAAAAAAAATCCCCTT‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                             <  2:569142/128‑1 (MQ=255)
                                                                           ttttttATTTGTTTATATTAAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                            <  2:1234723/128‑1 (MQ=255)
                                                                            ttttttttttttTATATTAAAAAAAAAAAAAAAAACAAACCCCATAAAAAATAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                             <  2:1113136/128‑1 (MQ=255)
                                                                            tttttATTTTTTAATCTTAAAAAAAAAAAAAAAAACAAAACACAT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                           <  1:4394086/128‑1 (MQ=255)
                                                                             ttttttttttttATTTTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                           <  1:1096133/128‑1 (MQ=255)
                                                                             ttttAATAGTTTAACATAACAAAAAAAAAAAAAACAAAACCC‑‑ATAAAAAATAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACAATTTATTTTTaaaa                                          <  1:4245662/128‑1 (MQ=255)
                                                                                tATTTTTTTATATTAAAAAATAAAAAAAAAAAAATACC‑‑TTTAAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                       <  2:3452202/128‑1 (MQ=255)
                                                                                  ttttttTATCTTAAAAAATAAAAAAAAAACAATACCATTAAAAAATAAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                        <  2:4322924/128‑1 (MQ=255)
                                                                                   ttGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAATAAAAAAAAAATATATTAGATAAAATTACATATTATAAAAAATTTTATTTTTAAAATAatat                                    >  2:4061521/1‑128 (MQ=255)
                                                                                    tttttATATTTAAAAAAAAAAAAAAAAAAAAAACCTTAAAAATTAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                     <  1:4586295/126‑1 (MQ=255)
                                                                                      atattaattaaaaaTAAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                 <  2:2197574/117‑1 (MQ=255)
                                                                                        tatttaaaaaaaTAAAAAAAAAAAATAATCTATAAAAATATAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                <  1:3602353/119‑1 (MQ=255)
                                                                                        tataataacaAAAAAAAAAAAAAAAAAACC‑‑ATTAAAAAATAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                <  1:1588807/121‑1 (MQ=255)
                                                                                        aaaattaaaataTAAAAAAAAAAAAATTACATTAAAAAATTAAAATAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAAATTTTATTTTTAAAATAAGATAtt                                 <  2:3977603/117‑1 (MQ=255)
                                                                                         atttaaaaaaaaaaaaaaaaaaaaATCCC‑‑TTTAAAAATT‑‑AAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                             <  2:1186611/120‑1 (MQ=255)
                                                                                          atttttaaaaTAAAAAAAAAAAAAATTCCAATAAAAATTAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                <  1:518498/121‑1 (MQ=255)
                                                                                           cttataaaaTAAAAAAAAAAAAATAGAC‑‑TTAAAAATTAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                             <  2:1953107/122‑1 (MQ=255)
                                                                                           attaaaaaaaaaaaaaaaaaaaATCACCTT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                            <  2:2511535/122‑1 (MQ=255)
                                                                                                 aaaaaaaaaaaaaaaaaaaaCACTTAAAAATAAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                         <  1:2986514/128‑1 (MQ=255)
                                                                                                    attaaaaaaaaaCAATTACATTTAAAATTTAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                      <  2:35017/125‑1 (MQ=255)
                                                                                                      aaaaaaaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAA‑‑AAAAAAAATAAAAAAAAAATATATTTATAAAAATTAAAAATTAAACAACATTTTATATATAAAATAATATATAGAAATAaaataaatat                 >  2:3525778/1‑126 (MQ=255)
                                                                                                       aaaaaaaaaaaaTACCC‑‑TTAAAAAATAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                  <  2:1906583/128‑1 (MQ=255)
                                                                                                       aaaaaaaaaCAAACCCATAAAAAATTAAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                    <  2:2315194/128‑1 (MQ=255)
                                                                                                                  aaaataccattaaaaataaaaaaAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat        <  2:2788635/117‑1 (MQ=255)
                                                                                                                   aaataaacttaaaaattaaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat        <  2:4418863/118‑1 (MQ=255)
                                                                                                                   aaaacccataaaaattaaaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat        <  2:1014407/120‑1 (MQ=255)
                                                                                                                    ataaaattaaaaattaaaaaAAAAAAAAATAAAAAAAACTAAAAACATACTCTATTTCTTAAAATTCACTATTATAACACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata         <  2:1641002/122‑1 (MQ=255)
                                                                                                                    aaagaattaaaaattaaaaaAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata       <  2:4537963/122‑1 (MQ=255)
                                                                                                                     cccTTAAAAAATAAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa      <  2:4026748/128‑1 (MQ=255)
                                                                                                                     accattaaaaataaaaaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa      <  1:3499641/121‑1 (MQ=255)
                                                                                                                       ccattaaaaattaaaaaAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat     <  1:4100015/125‑1 (MQ=255)
                                                                                                                        ccataaaaaattaaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc   <  2:4109660/125‑1 (MQ=255)
                                                                                                                        acattaaaaattaaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc   <  2:1310490/123‑1 (MQ=255)
                                                                                                                         cattaaaaattaaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt  <  1:1063776/124‑1 (MQ=255)
                                                                                                                          ttaaaaattaaaaaAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt  <  2:3861709/128‑1 (MQ=255)
                                                                                                                             |                                                                                                                               
GTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACT  >  CP016816/202366‑202613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.