New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 34944765 (0.430)703 (0.400)
+TAA
96/246 33.3 48.5% intergenic (+48/+118) JCVSYN2_00105/JCVSYN2_00110 ABC transporter permease/cell division protein FtsH
?CP016816 34945 = 765 (0.430)intergenic (+49/+117) JCVSYN2_00105/JCVSYN2_00110 ABC transporter permease/cell division protein FtsH
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1323 total aligned reads displayed.

TCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCT  >  CP016816/34817‑35071
                                                                                                                                      |                                                                                                                                                 
tCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATTCTGAACCAAGTACAATTCTAAGTTAATTTGATGAATAATAAAATATTAAACAAAATAAATTGTTATTTGTTTTTTTATTTA‑‑CTAtt                                                                                                                                                   >  1:583166/1‑128 (MQ=255)
 cTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑g                                                                                                                                               >  2:2998767/1‑128 (MQ=255)
 cTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACAAAATACAATATGTTTGGTATTATTAATAA‑‑CTAttt                                                                                                                                                  >  1:1787887/1‑127 (MQ=255)
    tACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGATGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGATTTTTTTATTAA‑‑CTAtttata                                                                                                                                               >  1:1740915/1‑124 (MQ=255)
    tACTTATTATTGAGTTTCAACAAAAAGAGTAACAAATGTTTAACAAAGTTAAATGGTATGGGATGTTGTTTAATAATAAAATATAAAACCAAAAACTTTGTGTTTGGTTTTTTTATTTA‑‑ATATT‑‑‑T‑‑‑‑aaa                                                                                                                                        <  1:1458362/128‑1 (MQ=255)
        tcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTTAAGTTAATGAATAATAAAATATTAAACCAAATAAATTAATTTTGTTATATTTATTTA‑‑ATATT‑‑‑a‑‑‑‑aaaaaaa                                                                                                                                    >  2:2592967/1‑128 (MQ=255)
          tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATTCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGCTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑aaaaaaaaa                                                                                                                                 >  2:3241444/1‑128 (MQ=255)
             aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑aaaaaaaaaaaa                                                                                                                              >  1:3618092/1‑128 (MQ=255)
                aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATTAATAATAAAAGATTAAACCAAATACATTGTGTTAGGTTTTTTTATTTA‑‑CTATT‑‑‑a‑‑‑‑aaaaaaaaaaaaaa‑‑a                                                                                                                        >  1:2135190/1‑128 (MQ=255)
                aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaa‑‑a                                                                                                                        >  1:1048875/1‑128 (MQ=255)
                aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACAAAATACATTGTGTTTGTTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaa‑‑a                                                                                                                        >  1:2360550/1‑128 (MQ=255)
                 gTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAATTGAAGTTGATGAATAATAAAATATTAAACCAAATACATTGTTTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaa‑‑aa                                                                                                                       >  2:869529/1‑127 (MQ=255)
                  tttAAAAAAAAACAGTAATAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTTATTAATAAAAAAACATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑T‑‑‑‑aaaaaaaaaaaaaa‑‑aat                                                                                                                      <  1:3882715/128‑3 (MQ=255)
                    taaaaaaaaaGATTAAGAAATTTTGAAAAAAGTAAAATGATAATTTAAGTTTATTAATAAAAAAATATTAAACAAAAAAAATTGTGTTTGGTTTTTTTATTTA‑‑ATATT‑‑‑T‑‑‑‑aaaaaaaaaaaaaa‑‑aaata                                                                                                                    <  1:225336/123‑5 (MQ=255)
                     caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTCGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaa‑‑aaaaat                                                                                                                 >  2:932518/1‑126 (MQ=255)
                         aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑aaaaaata‑‑aa                                                                                                         >  1:705426/1‑127 (MQ=255)
                          aaaaTATTAATAAATGCTTAACCAAGTACAATGCTAATTTAAGTTTATTAATAATAAAAGATAAAACAAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑Att                                                                                                        <  1:3059206/128‑1 (MQ=255)
                          aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTTTGTTTTTTTTTTTTATTTA‑‑CTAAT‑‑‑T‑‑‑‑AAAAAAAAAAAAAA‑‑aaaataaa‑‑aaa                                                                                                        >  2:1848476/1‑126 (MQ=255)
                          aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTTGTTATTTAATTTA‑‑CTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaa‑‑aaaaataaaaa                                                                                                            >  1:2459113/1‑121 (MQ=255)
                            aattttaataaATGATTAAACAATTAAAATGTTAATTTAAGTTTTTTAATAATAAATTATTAAACCAAATAATTTGTTTTTGGTTTTTTTTTTTA‑‑ATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑Attt                                                                                                       <  2:2073634/123‑1 (MQ=255)
                             atagtattaaaTGCTGAACCAATTACAATTCTAATTGAATTTTATTAATAATAAAAGATTAAACCAAATAAATTTTGTTTTGTTTTTTTTTTTA‑‑ATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTg                                                                                                      <  1:2722971/120‑1 (MQ=255)
                              gagTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATAAATCCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAa‑‑aaataaa‑‑ataatatg                                                                                                   >  2:2430960/1‑122 (MQ=255)
                               agTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTTTGTTTTGATATTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ataatata‑‑aatata                                                                                                     >  2:235624/1‑123 (MQ=255)
                                gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAa‑‑aaaaata‑‑atataatttg                                                                                                 >  1:3348223/1‑120 (MQ=255)
                                gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑aaaataataaaaattaa                                                                                                    >  2:265348/1‑117 (MQ=255)
                                gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTGGTTTTTTTATATA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTgaa                                                                                                    >  1:1531826/1‑126 (MQ=255)
                                   aaaaaTTCTTAACCATTTAAAATGAAAAGTTAATTTTATTAAAAAAAAAAAAATAAACCAAATAAAATGGGTTTGGTTTTTTTATTTA‑‑AAATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATAc                                                                                                 <  1:2089079/126‑1 (MQ=255)
                                    taaaTGCTTAACAAATTACAATGATAATTTAAGTTGATTAATAATAAAATATTAAACAAAAAACATTGTGTTTGGTTTTTTTATTTA‑‑ATATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACtat                                                                                              <  1:3406730/127‑1 (MQ=255)
                                    gAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑ATTAATAAA‑‑Atttaataaata                                                                                               >  2:3673505/1‑120 (MQ=255)
                                             cttccgttttaaTGTTAATTTAAGTTTATTAATAAAAAAATATAAAAACAAATAAATTTTTTTTTGTTTTTTTATTTA‑‑ATATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAAt                                                                                       <  1:618247/118‑1 (MQ=255)
                                             aaCAAAGTAAAATGCTAATTTATTTTTATTAAAAAAAAAATATTAAAACAAATAAATTGTTTTTGGTTTTTTTATTTA‑‑ATATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAAt                                                                                       <  1:874348/128‑1 (MQ=255)
                                                   gTACAATGCTAAGTGAATTTTATTAAAAATAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑AAATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGttttt                                                                                <  1:3815983/128‑1 (MQ=255)
                                                    tACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑AAAATATA‑‑AATTAAAAACTATAAAAAAATtttttta                                                                               >  2:1138363/1‑127 (MQ=255)
                                                     aaaaTGATAATTTAATTTTATTAATAAAAAAATATTAAAACAAATAAATTTTTTTTGGTTTTTTTATTTA‑‑AAATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTc                                                                               <  1:2609268/126‑1 (MQ=255)
                                                      cAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAAAAAAAAAAAAAAAAA‑‑AAAATAAA‑‑ATATAAATACTAAAAAAAAtttttttta                                                                               >  2:329037/1‑127 (MQ=255)
                                                       aaagCTAAGAGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTCATTGGTTTTTAAATTTA‑‑ATAATT‑‑‑A‑‑‑‑AAAAAAAAAAAAACA‑‑AAAAAAAA‑‑ATAAGAAAACTATAAAAAAttttaaatcaa                                                                             >  2:3887524/4‑119 (MQ=255)
                                                              aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAAAATA‑‑ATTTGAATAATATAAAAAATTTTTTTTAAAATAATTa                                                                      >  1:3776740/1‑128 (MQ=255)
                                                              aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑AAAATATA‑‑ATTTTCAAAATATAAAAAATTGATTTAAAAATAATTa                                                                      >  1:1270410/1‑128 (MQ=255)
                                                               gTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑AAAATATA‑‑ATTTGAATAATATAAAAAATTCTTTTTCAAATAAGTAtt                                                                    >  2:3846615/1‑128 (MQ=255)
                                                                ttattttttttaataatAAATTATTAAAATAATTAAATTTTTTTTGGTTTTTTTTTTTTA‑‑TTTTTAAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATTCTATAAAAAATTGTTTTTCAAATAAGTAt                                                                     <  2:2516324/117‑1 (MQ=255)
                                                                tGAAGTTGATGAATAATAAAATATTAAACCAAATACATTTATATTGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTAACAACTAAAAAAAAATTATATTAAAATAATTaaac                                                                   >  2:3484039/1‑125 (MQ=255)
                                                                  aaGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑AAAAAAAA‑‑ATTTGAAAAATTAAAAAAATTTTTTTTAAAATaaattataa                                                                  >  1:465387/1‑121 (MQ=255)
                                                                      ttattattaataaAAAATTAAACAAAATAAATTTTTTTTGTTTTTTTTATTTA‑‑ATATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAg                                                              <  1:1973763/121‑1 (MQ=255)
                                                                      tgtttaataaaAAAATTTTAAACCAAAAAAATTTTGTTTTGTTTTTTTATTTT‑‑ATATTTAAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGa                                                               <  2:758823/123‑1 (MQ=255)
                                                                         tcaataatATATGTTTATACAAAATAATTTTGGTTGGGTTTTTTTTTTTA‑‑TTTTT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                          <  2:2232537/126‑1 (MQ=255)
                                                                         taaaaaaaaaaaaaTTAAACAAAAAAAATTTTTTTTTTTTTTTTTATTTA‑‑ATATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                          <  1:1925411/120‑1 (MQ=255)
                                                                            ataataAAATCTTTAAACAATTAAATTTTTTGTTTTTTTTTTATTTATATTTA‑‑‑A‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAttt                                                      <  2:611424/128‑1 (MQ=255)
                                                                             taatatAATTTTAAAAAAAATAAATTTTGTTTTGTTTTTTTATTTA‑‑ATTTTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAttt                                                      <  1:2794104/128‑1 (MQ=255)
                                                                              aataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑AAAATATA‑‑AATTTCATAAAAAAAAAAATTATTTATAAAATAAATATAAAAGAATAAAATTa                                                     >  1:1213804/1‑128 (MQ=255)
                                                                               ataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTTCATACTATAAAAAATTTTTTTTCAAATAATTATACATGAGTAAATTTaaa                                                   >  2:1665023/1‑128 (MQ=255)
                                                                                taaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTTTTTTTCAAATAATTATACAGCtttaaatttaaa                                                   >  2:3419697/1‑128 (MQ=255)
                                                                                     ttttAAACAAATTTAATTTTGTTTTTTTTTTTTTTTTT‑‑ATTTT‑‑‑T‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                            <  2:1274067/126‑1 (MQ=255)
                                                                                     gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATTTA‑‑ATTTGAATTCTATAAAAAATTGTTTTACAAATAAGTTTACATTATTAAATTTAAAAAAca                                              >  1:3576723/1‑127 (MQ=255)
                                                                                     gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGAATTAAGTATTAAATTTAAAAAAca                                              >  2:310763/1‑127 (MQ=255)
                                                                                     aaaaaaaCCAAACACAATGTATTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑AAAAAATA‑‑ATTTTAAAAAAATAAAAAATTTTTTTAAAAAAAATTATTAAGAATTAAATTTaaaaaaac                                              >  2:1744128/5‑126 (MQ=255)
                                                                                      atttaaaaaaaTATATTTTTTTTTTTTTTTTTATTTAA‑‑TTTTT‑‑‑T‑‑‑‑AAAAAAAAAAAAATA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCa                                             <  1:1686232/120‑1 (MQ=255)
                                                                                      aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑AAAATAAAA‑‑ATTTACATACTATAAAAAATTGTTTTTAAAAAATTTATTAAGAATTAAATTAAAAAAACCa                                             >  2:3187862/1‑128 (MQ=255)
                                                                                      aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAATTTTAAAAAACAAaga                                          >  1:3306592/1‑128 (MQ=255)
                                                                                       ttAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAAAAAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAAGTATTAAATTTAAAAAAcaa                                             >  1:2036674/1‑126 (MQ=255)
                                                                                       ttAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTAAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                            >  1:3218056/1‑128 (MQ=255)
                                                                                       ttAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTAAAATAAGTATTCAGGATTAAATTTAAAAAACCAaga                                          >  1:1138366/1‑128 (MQ=255)
                                                                                       ttAAAAAAAATAAATTTGTTTTGTTTTTTTTATTTA‑‑ATTTTTAAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCa                                             <  1:3536786/128‑1 (MQ=255)
                                                                                       taaaaaaaaaTATATTGTTTTTTTTTTTTTTATTTTA‑‑TTTTTA‑‑A‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                            <  1:81821/121‑1 (MQ=255)
                                                                                         aaaCCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATGATATA‑‑ATTTGAATAATTTAAAAAATTTTTTTTAAAATAAGTATTAAGTATTAAATTTAAAAAACAAagt                                          >  1:3720265/1‑127 (MQ=255)
                                                                                          aaCCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGAATAATATAAAAAATTTTTTTTCAAATAAGTATAAATTAGTAAATTTAAAAAACaaatat                                         >  1:1324607/1‑125 (MQ=255)
                                                                                          aaCCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑AAAATTATATTATTTGGAAAAATTAAAAAATTTTTTTTACAATAATTTTTAAAGAGTATATTTAAAAAACaaata                                          >  1:3018849/1‑126 (MQ=255)
                                                                                            aaaataaCATTTTGTTTGTTTTTTTTTTTTAATTTTTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAttt                                       <  2:3056551/122‑1 (MQ=255)
                                                                                            aaaaaTACTTTTTGTTTTGTTTTTTTATTTA‑‑ATTTTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGtt                                       <  2:2147850/126‑1 (MQ=255)
                                                                                             taatttatttGTGTTTTGTTTTTTTTTTTA‑‑ATATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTta                                      <  2:1020248/120‑1 (MQ=255)
                                                                                              ataaaaattttttttGTTTTTTTTATTTA‑‑TATTT‑‑‑AAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                     <  2:1943331/116‑1 (MQ=255)
                                                                                              aaataaatTTTTTTTTTTTTTTTTATTTA‑‑ATATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTtat                                     <  1:950715/128‑1 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAAAAAAAAAAAAAAAAA‑‑ATAATAAA‑‑ATTTGAATAAAAAAAAAAATTTTTTTAAAAAAAATTATTAATTATAAAATTTaaaaaaaaaaaattaa                                      >  2:1346819/1‑118 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATATTATA‑‑ATTTGAAAACTAAAAAATATTTTTTTAAAAAAAATAATAAATAATAAAATTAAAAAAACCAAAAGTtat                                     >  1:1628848/1‑128 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑TTTTGCATAATATAAAAAATTTTATTTAAAATAATTATACATAATTAAATTTAAAAAAACAATATTtat                                     >  1:763256/1‑128 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑AAAAAAAA‑‑ATTTGAAAAAAATAAAAAATTTTTTTAAAAATAAAAATTAATTAAAAAATTAaaaaaaaaaaaatataa                                     >  2:2801432/1‑117 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑ATAAATTTA‑‑TTTTGAAAAATTAAAAAAATTTTTTTAAAAAAATTATTAAAGAGTAAATTTTAAAAACAAAAATTtata                                    >  1:2962765/1‑128 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑ATAATAAA‑‑ATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATTAAGGATTAAATTTAAAAAACAATTATTTATaa                                   >  1:2311590/1‑128 (MQ=255)
                                                                                               aaTACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAAAATA‑‑ATTTGCATACTATAAAAAATTGTTTTTAAAAAATGTATACAGTAGAAAAATAAAAAAACCaactttaata                                    >  2:2028864/1‑120 (MQ=255)
                                                                                                aTACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTTCATAATATAAAAAATTTTTTTAAAAATAATTATTCAGGAGAAAATTTAAAAAACCAACATTTAaaaa                                  >  2:3750009/1‑128 (MQ=255)
                                                                                                aTAAATTTTTTTTTGTTTTTTTATTTA‑‑ATTTTTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTTCATACTATAAAAAATTGTTTTTCAAATAAGTATTCATGAGTAAATTTAAAAAACCAAGAGTtata                                    <  1:3478911/128‑1 (MQ=255)
                                                                                                 tACATTTTGTTTGGTTTTTTTAATTA‑‑AAATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATaact                                 <  2:335610/128‑3 (MQ=255)
                                                                                                 tACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTTCATAATATAAAAAATTGTTTTTCAAAAAATTATTAAGGAGTAAATTTAAAAAACAAATAGTTATaatt                                 >  2:819247/1‑126 (MQ=255)
                                                                                                 caCAATGTATTTGGTTTTTTTATTTG‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATAATAATAAAAATTTTTTTTAAAATAAATATAAAGTAGTATAATAAAAAAACCAAGAATAATaaa                                  >  1:2666297/2‑128 (MQ=255)
                                                                                                 aaaaTTGTTTTTTTTTTTTTTATTTA‑‑CAATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATaac                                  <  1:532231/125‑2 (MQ=255)
                                                                                                  aaaTTTTGTTTTGTTTTTTTATTTA‑‑ATATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                 <  1:1580909/126‑1 (MQ=255)
                                                                                                  aCAATGTATTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑AAAATAAA‑‑ATTTAAAAAATATAAAAAATTTTTTTTAAAATAATAATAAAATATTAAATTTAAAAAAAAAATATTTAAAAAt                                 >  1:1374733/1‑128 (MQ=255)
                                                                                                  aCAATGTATTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTTAAATAAATAAAAAATTTTTTTATAAAAAATATTTTAATTTTAAAATTAAAAAAACAATAGTTATaaaaat                               >  1:1868847/1‑125 (MQ=255)
                                                                                                   cATTGTGTTTTGTTTTTTTATTTA‑‑ATATTTAAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                 <  2:2892236/128‑1 (MQ=255)
                                                                                                   cATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATAATATAAAAAATTTTTTTTAAAATAATTATTAAGGAGTAAATTTAAAAAACAAATAGTTTAAAAta                                >  1:3103161/1‑127 (MQ=255)
                                                                                                   aatttttttttGTTTTTTTATTTA‑‑ATATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATc                                <  1:3674021/121‑1 (MQ=255)
                                                                                                    aTTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATAATAAAAAAATTTGTTTTTCAAAAAAGTATTCAGAATTAAATTAAAAAAACCAAAAGTTATAAATCt                               >  1:2414688/1‑128 (MQ=255)
                                                                                                      tgtgTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTCAGTAGTAAATTTAAAAAACCAAGAGTAATaaagattg                             >  1:2897864/1‑123 (MQ=255)
                                                                                                      tgtaTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑AAAATATA‑‑ATTTTCATACTATAAAAAATTTTTTTTCAAATAATTATAAATAAGTAAATTAAAAAAACAAATATTTATTAATAttt                             >  1:2521567/1‑127 (MQ=255)
                                                                                                       gtatttGGTTTTTTTATTTA‑‑CTATT‑‑‑GAA‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGAATAATATAAAAATTTTTTTTTAAAATATTTATTAAGATATTAATTTAAAAAAAAAAATTTTATAAATCtttg                            >  1:1001909/4‑126 (MQ=255)
                                                                                                           tttgtgttttttATTTT‑‑ATATT‑‑‑T‑‑‑‑AAAAAAATAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAATAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttt                        <  2:3547678/122‑1 (MQ=255)
                                                                                                           tttgTTTTTTTATTTA‑‑TTATTTAA‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttt                        <  2:1458817/125‑1 (MQ=255)
                                                                                                            tGGTTTTTTTATTTA‑‑CTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAA‑‑AAAATAAA‑‑ATTTGCATAATAAAAAAAATTTTTTTTAAAATAATTATTAAGTATTAAATTTAAAAAACAAAAATTAAAAAATAtttttttttt                      >  2:159594/1‑128 (MQ=255)
                                                                                                            tGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTCAGTAGTAAATTTAAAAAACAAAGATTTATAAATCTTTGttttttt                     >  2:452831/1‑127 (MQ=255)
                                                                                                             ggTTTTTTTATTTA‑‑CTATT‑‑‑GAAAAAAAAAAAAAAAAAA‑‑ATAAAATA‑‑ATTTGCATAATAAAAAAAATTTTTTTTAAAATAATAATTAAGTATTAAATTTAAAAAACAAATATTTATAAATATTGTtttt                        >  1:3175351/1‑128 (MQ=255)
                                                                                                                                      t‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCt  <  2:1191620/128‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                                 
TCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTA‑‑CTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAA‑‑ATAATATA‑‑ATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCT  >  CP016816/34817‑35071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.