New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 437880867 (0.360)597 (0.200)
+ATAT		 102/186 31.6 34.2% intergenic (‑184/+238) JCVSYN2_01985/JCVSYN2_01990 glycosyl transferase/ABC transporter permease
?CP016816 437881 = 1254 (0.400)intergenic (‑185/+237) JCVSYN2_01985/JCVSYN2_01990 glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1860 total aligned reads displayed.

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAA  >  CP016816/437753‑438007
                                                                                                                                 |                                                                                                                                   
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑a                                                                                                                                  >  2:5561506/1‑128 (MQ=255)
  aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTATTAAATGAATCAAATCAACAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑at                                                                                                                                 >  1:6557150/1‑128 (MQ=255)
     cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atata                                                                                                                              >  2:5821041/1‑128 (MQ=255)
      ttATTTTTGTAGTTGTAAGTTTCATTTTTAATGAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatat                                                                                                                             >  2:6441794/1‑128 (MQ=255)
       tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatata                                                                                                                            >  1:178220/1‑128 (MQ=255)
        aattttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTAAGTAAAATAAGCAATTCAAAAACCTCCATAATAACTATAGATTTAAT‑‑T‑‑atatatat                                                                                                                           >  2:3483643/3‑128 (MQ=255)
        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatat                                                                                                                           >  2:5445963/1‑128 (MQ=255)
        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatat                                                                                                                           >  2:319643/1‑128 (MQ=255)
         tttttGTAGTTGTATGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACATACATATTACCTATAGAGTTAAT‑‑G‑‑atatatata                                                                                                                          >  1:2023181/1‑128 (MQ=255)
         tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatata                                                                                                                          >  2:3338297/1‑128 (MQ=255)
            ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatat                                                                                                                       >  2:2420272/1‑128 (MQ=255)
               tAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatata                                                                                                                    >  1:2467414/1‑128 (MQ=255)
                  ttGTTATTTTCATTTTTAATAAATATTAGAAATATAAATTGTATTTTTAAAATATATATTTTATGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatat                                                                                                                 <  2:1475155/128‑1 (MQ=255)
                  ttGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCAAATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatat                                                                                                                 >  2:6044302/1‑128 (MQ=255)
                   tGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAAGCAAATCAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatata                                                                                                                >  2:3008639/1‑128 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatat                                                                                                               >  2:1601830/1‑128 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑atatatatatatatatatat                                                                                                               >  1:2666288/1‑128 (MQ=255)
                       aGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatata                                                                                                            >  1:481906/1‑128 (MQ=255)
                          ttCATTTTTAATATATATTATAAATAAAAATTTTTTTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatgcaa                                                                                                         <  2:1372647/128‑5 (MQ=255)
                          ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTCCATATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatat                                                                                                         >  2:683422/1‑128 (MQ=255)
                           tCATTTTTAATAAATATTAGATATAAAAATATTATTTTTAAAATAAATATTTTATTAAAAGAATAAAATCAAAAACCTCCATATAACCTATAGAGATAAA‑‑G‑‑atatatatatatatatatatatatata                                                                                                        <  1:2834256/128‑1 (MQ=255)
                           tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAATCAAAGAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatata                                                                                                        <  1:4554084/128‑1 (MQ=255)
                               atttAATATATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTATGAAATTAATCAAATAAAAAACCACAATATTAAATATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCa                                                                                                  <  2:1060450/127‑1 (MQ=255)
                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAACAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATAAAT‑‑CCac                                                                                                 >  2:3116670/1‑127 (MQ=255)
                                 ttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCaat                                                                                                >  2:3924384/1‑127 (MQ=255)
                                 ttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatatattaaag                                                                                                  >  1:4311891/1‑123 (MQ=255)
                                   aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatataaaaaagat                                                                                                >  1:5901626/1‑120 (MQ=255)
                                    ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatatattaaataga                                                                                               >  1:2544429/1‑120 (MQ=255)
                                    ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGa                                                                                             <  1:614932/128‑1 (MQ=255)
                                     taaataTTATATATAAAAATTGTTTTTTTAAAATATATATTTTATTATAATAATAAAATATAAAATCTCCATATTAAATATAGAGTTTAT‑‑T‑‑atatatatatatatatatatatatatcattaactcta                                                                                              <  2:568918/128‑12 (MQ=12)
                                      aaataTTATAAATAAAAATTTTATTTTTAAAATAAATATATTATTAAATTAATAAAAGAAAAAAAATCAATATTACCTATAGAGATAAT‑‑G‑‑atatatatatatatatatatatatatatatatatatat                                                                                             <  2:1159497/128‑11 (MQ=255)
                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATTAAGCAAAGAAAAAAACTCCATATTAAATATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCa                                                                                          <  1:5643309/128‑1 (MQ=255)
                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGCAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑AGATATAAATATATCTATAGATATATCT‑‑GCCAGCGAGCa                                                                                          >  2:2037173/1‑128 (MQ=255)
                                        atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCTAGCGATCAg                                                                                         >  1:5474776/1‑128 (MQ=255)
                                         tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑GCACGCGATCAGCATaa                                                                                    >  2:408274/1‑128 (MQ=255)
                                           ttATAAATAAAAATAGTATTTTTAAAATAAATATTTTAGTTTAATAAGCAAATCTAAAAACTCCATATTACATATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATaa                                                                                    <  1:3482801/128‑1 (MQ=255)
                                           ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGc                                                                                        <  1:6685437/128‑1 (MQ=255)
                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCATCATa                                                                                     >  2:5030942/1‑128 (MQ=255)
                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGAGATAAGCATaaa                                                                                   >  2:4178236/1‑128 (MQ=255)
                                             aGAAATAAAAATTGTATTTTTAAAATAAATATTTTTGTATATTAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATaa                                                                                    <  1:3345971/128‑1 (MQ=255)
                                             aGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGAAAAGAAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATaa                                                                                    <  1:833622/128‑1 (MQ=255)
                                              gAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCGAGCTATCAGCAaaaa                                                                                   >  2:398467/1‑128 (MQ=255)
                                                aaTAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATgg                                                                               <  2:4312/128‑1 (MQ=255)
                                                aaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAATCTATCAGAATAAAAt                                                                                 >  2:5315928/1‑128 (MQ=255)
                                                aaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATgg                                                                               <  2:2532132/128‑1 (MQ=255)
                                                  tatataTTGTATTTTTAAAATAAATATTTTATGTAATGAAGAAAATCAAAAATATCTATATTTACTATAGAGTTATT‑‑G‑‑TTATATTTATATATATATATATATATTT‑‑GCAAGCGATCAGCATAAAATgg                                                                               <  1:3934051/123‑1 (MQ=255)
                                                  tAAAAATTTTATTTTTATAATAAATATTTTAGGAAATTAATCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTg                                                                             <  2:232317/128‑1 (MQ=255)
                                                  tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATAT‑T‑‑‑AAAGAGATCAGCATAAAATtgtg                                                                             >  1:3098590/1‑128 (MQ=255)
                                                    aaaaTTGTTTTTTTAATATAAATATTTTATGATATTATTAAAACAAAAAACCTCTATATAAAATATAGAGAGAAT‑‑T‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTg                                                                             <  2:4616988/128‑1 (MQ=255)
                                                    aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑AATAGAGAACAGCATAAATTGGTg                                                                             >  2:3630655/1‑128 (MQ=255)
                                                     aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAACCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑TCAAGAGATCAGCATAAAATGGTGa                                                                            >  1:5122269/1‑128 (MQ=255)
                                                           tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GAAAGCGATCATCATAAAATggattaatata                                                                      >  2:6719609/1‑119 (MQ=255)
                                                            aTTTTTAAAATATATATTTTAGTATATGAATCAAAGCAAAAAGATCCATATTTCCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGAt                                                                   <  1:1501402/128‑1 (MQ=255)
                                                            aTTTTTAAAATAAATATTTTAGTAAATGAATAAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAg                                                                     <  1:4943673/128‑1 (MQ=255)
                                                             tttttAAAATAAATATTTTATGAAATTAATCAAATAAAAAAACTCCATATAAACTATAGAGTTTAT‑‑‑‑‑‑TATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATc                                                                  <  2:4768931/128‑1 (MQ=255)
                                                             tttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGAGATCAGCATAAAATCGTGATATATAGa                                                                    >  1:678032/1‑128 (MQ=255)
                                                              ttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑TCGAGCTATCATCATATAATGGTAATATTTAGAt                                                                   >  2:798271/1‑128 (MQ=255)
                                                                ttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑TCAAGCGATCAGCATAAAATGGAGAAATATAGATCt                                                                 >  1:3861038/1‑128 (MQ=255)
                                                                ttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAAGGGTGAAATATATATCt                                                                 >  2:1925221/1‑128 (MQ=255)
                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATTGAGAAATTTATATCtc                                                                >  1:4444682/1‑127 (MQ=255)
                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATAAAA‑‑GCAATAGATCATCAAAAAACGGTCTTATTTAGATATg                                                                >  2:383348/1‑128 (MQ=255)
                                                                   aaataaatATTTTAGGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  2:6347581/128‑1 (MQ=255)
                                                                   aaataaatATTTAATGACATGTAGAAAAGAAAAAAGATCAATATTTACTATAGAGATAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                              <  2:1279398/128‑1 (MQ=255)
                                                                     attaataTTTTATTAAATTAATAAAAGATAAAACCTTAATATTTCCTTTAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCTAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  1:3226133/125‑1 (MQ=255)
                                                                     atatatatTTTAGGATATGAATAAAAGAAAAAACCTCAATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  1:1000903/128‑1 (MQ=255)
                                                                     atatatatTTTAGCTATTGATTCAAATAACAAACCTCCATTTTCCCTATAGAGTTTAT‑‑C‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGCTCAGAATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  2:4914911/128‑1 (MQ=255)
                                                                     ataaataTTTTATGAAATTAAGAAAAGAAAAAAACTATTTATTAATTATATAGTTATT‑‑G‑‑ATATTTATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  2:5940156/128‑1 (MQ=255)
                                                                         atatTTTTGGAAATGTAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAAT‑GTGAAATTTAGATCTGAGTTGGTCt                                                       <  2:172792/128‑1 (MQ=255)
                                                                           atTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GAAAGCGATCAGCATAAAATGGTTATATTTAGATCTGAGTTGGTCtt                                                      >  1:1887879/1‑128 (MQ=255)
                                                                           atTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                    <  1:6442071/128‑1 (MQ=255)
                                                                            ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCt                                                       >  1:4202170/1‑128 (MQ=255)
                                                                             tttactaaaTCAAGCACATCAAACACCACCATAATACATAAAGATTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                    <  2:4467196/122‑1 (MQ=255)
                                                                             tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATAATCAAGCGAAAAAAATAAAATTTTTAAATTTATATATTAGTTTGtata                                                      >  1:2973905/1‑125 (MQ=255)
                                                                              ttAGCAAATCAATCAAATAAAAAAAATCCATATTAACTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GAAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                   <  1:1247855/128‑1 (MQ=255)
                                                                                aGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAA‑‑TCAAGAGCTCAGAATAAATTGGTGATATTTAGATCTGAGTTGATCTTAAAtt                                                 >  1:3603673/1‑128 (MQ=255)
                                                                                     attaatcaaagcaaaAACCTCTATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtt                                          <  1:931128/122‑1 (MQ=255)
                                                                                     aTGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtt                                          <  1:225292/128‑1 (MQ=255)
                                                                                      tgaataaaatataaaaACTCTATATTACATATAGAGTTATA‑‑T‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGt                                           <  1:576477/116‑1 (MQ=255)
                                                                                             aagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                    <  1:5234321/128‑1 (MQ=255)
                                                                                             aagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GAAAGCTCTCATCATAAAATGGTGAAATTTAGATCTGAGTTGGTGTTTAATTTTTAGTTtttatt                                    >  1:2368564/1‑128 (MQ=255)
                                                                                               gcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATAT‑‑TCTAGCTATCAGAATAAAATGGTGATATTTATATCTGATTTGGTCTTATATTTTTAGTTtttatt                                    >  2:916513/1‑128 (MQ=255)
                                                                                               gcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATAT‑T‑TATATATATATATATATATAT‑‑GCAAGCGCTCATAATAAAATTGAAAATTATATATCTGAGTTAGTATTAAATTTATAGtttatatttata                                >  2:3718734/1‑128 (MQ=255)
                                                                                               gcaaaAACCTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTtata                                <  1:111544/128‑1 (MQ=255)
                                                                                                    aaCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGtt                             >  2:5209179/1‑128 (MQ=255)
                                                                                                       cTCCATATTACATATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                          <  1:5359033/128‑1 (MQ=255)
                                                                                                       cTCCATAATACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                          <  1:6010519/128‑1 (MQ=255)
                                                                                                       cTCCAAATTAGCTATAGAGATATTCAT‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGttt                            <  2:2161559/128‑1 (MQ=255)
                                                                                                        tCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑TCAAGCGATCAAAATAAAATTTTGATATATAGATATGAGTTGGTCTTAAATTTGTAGATTTTATTTTTTGTTtata                         >  2:2750139/1‑128 (MQ=255)
                                                                                                        tCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                         >  2:6588862/1‑128 (MQ=255)
                                                                                                         ccATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGCTCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTATATTTGTAGTTTTTTTATATAGTTTATaa                        >  2:2665686/1‑128 (MQ=255)
                                                                                                         ccATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGTTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                  >  1:716761/1‑128 (MQ=255)
                                                                                                              ttACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑TCTAGCGATCAGAATAAAATGGTAAAATATAGATCTGAGTATGTAAAAAATATTTAGTTTTTATTTATATTTTATAAAGTta                   >  1:3763409/1‑128 (MQ=255)
                                                                                                              ttACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATA‑‑‑‑AACGCGCTCAAAATAAAATTGAGATATATAGATCTGAGTTTGTCTTAAATTTGTATTTTTTATATATAGTTTATaaatattaa                 >  1:2157664/1‑122 (MQ=255)
                                                                                                               tACCTATAGAGTTAAT‑‑G‑‑ATATATATATAAATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                  <  2:6172295/128‑1 (MQ=255)
                                                                                                                aCCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTATATCTGATTTTGTATTAAATTTTTAGTTTTTATTTATAGTTTATAAAGTta                   >  1:4663159/1‑128 (MQ=255)
                                                                                                                     taGAGTTAAT‑‑G‑‑ATATTTATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt            >  1:6326635/1‑128 (MQ=255)
                                                                                                                      agagTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATATATAGTTTATAAAGATAATAATTTAGa         >  1:1651388/1‑128 (MQ=255)
                                                                                                                            aaT‑‑G‑‑ATATATATATATATATATATATATATAA‑‑GCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTTATTTTGTTGTTTTTATTTTTAGTTTATATAGTTAATATTTTAGAtttt     >  2:2904135/1‑128 (MQ=255)
                                                                                                                              t‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa   >  1:4098172/1‑128 (MQ=255)
                                                                                                                                 g‑‑ATATATATATATATATATATATATATAT‑‑GCCAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTaa  <  1:1384813/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                   
TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAA  >  CP016816/437753‑438007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.