New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 76896 =1458 (0.790)234 (0.140) 116/224 16.5 15.6% intergenic (‑145/+40) JCVSYN2_00300/JCVSYN2_00305 UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
?CP016816 = 76892 1223 (0.740)intergenic (‑141/+44) JCVSYN2_00300/JCVSYN2_00305 UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1608 total aligned reads displayed.

AAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTT  >  CP016816/76765‑77019
                                                                                                                               |                                                                                                                                 
aaaTTTATATATTTTAGTGAAATTAAGGTTGTATAATACAAATTAATAATAACTGTACAAACCAAATTCCCCTTTAAATTAAAATAACATTATATAAATATAAATTTTTTAAAGAAAAATATTACAAc                                                                                                                                   <  2:1053914/128‑1 (MQ=255)
 aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑t                                                                                                                                >  2:3106682/1‑128 (MQ=255)
  aTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑tt                                                                                                                               >  1:770636/1‑128 (MQ=255)
    ttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑tttt                                                                                                                             >  2:453905/1‑128 (MQ=255)
      atatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑tttttt                                                                                                                           >  1:1004602/1‑128 (MQ=255)
       tatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑ttttttt                                                                                                                          >  1:1949356/1‑128 (MQ=255)
         tatattatatAACTTAACTAAGTATAAAACAAATTAAATAAAACTGTACAACCAAAAATTCCCTTTAAATTCAAATAACATTATATAAAGAAAAATTTTTTAAATAAAAATATTAAAAC‑‑ttttttttt                                                                                                                        <  1:1626111/128‑1 (MQ=255)
         tatatTAGTTAAATTTATGATTTTATATAAAAATTAATAATAAATGTACAACCCAAATTACACTTTAAATTAAAAAAAAATTATATAAAGATAAATTTTTTAAATAAAAATATTAAAAC‑‑ttttttttt                                                                                                                        <  2:2939583/128‑1 (MQ=255)
         tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATCCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑ttttttttt                                                                                                                        >  2:2620702/1‑128 (MQ=255)
           tatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAGGATAAATTTTTTAAAGAAAAATATTACAAC‑‑ttttttttttt                                                                                                                      >  1:1351851/1‑128 (MQ=255)
            atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑tttttttttttt                                                                                                                     >  1:324449/1‑128 (MQ=255)
            atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCAAAATTCCACTTTAAATTCAAATAACATTATATAAATATAAAATTTTTAAATAAAAATATTACAAC‑‑tttttttttttt                                                                                                                     >  1:70204/1‑128 (MQ=255)
             ttaatgtaattAAGGTTGTATAATTCAAATTAATAAAAAATGTTCAACCCAAATTCCCCTTTAAATTAAAAAAACATTATTAAAATATAAATTTTTTAAATAAAAATATTACAAA‑‑ttttttttttttt                                                                                                                    <  2:1153749/119‑1 (MQ=255)
              tAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑tttttttttttttt                                                                                                                   >  2:1290577/1‑128 (MQ=255)
                  gAACTTAAGGATGTATAAAACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑tttaattttttttttaaa                                                                                                               >  1:3101898/1‑125 (MQ=255)
                        aatgATTTATAATAAAAATTAATAAAAACTGTACAAACCAAATTACCCTTTAAAATTAAAAAACATTATATAAATATAAATTTTTTAAATAAAAATATTACAAA‑‑TTTTTTTTTTTTTTTTGGAACTaa                                                                                                         <  2:927831/125‑1 (MQ=255)
                        aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑ttttttttttttttttttaaacta                                                                                                         >  1:1168014/1‑120 (MQ=255)
                        aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TATTTTTTATTTATTGGAAATAAc                                                                                                        >  1:1824874/1‑128 (MQ=255)
                         aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTT‑GAACTaaaa                                                                                                       >  1:863210/1‑126 (MQ=255)
                          ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑tattattttttttttaaaataaaaaa                                                                                                       >  1:51887/1‑117 (MQ=255)
                             tGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAATATAAATATTTTAAAGAAAAATAGTACAAC‑‑TGATTATTTTTTTTTT‑GAACTAGCaaaaa                                                                                                   >  1:3281384/1‑124 (MQ=255)
                             tGTATAATAAAAATTAAATATAAATGTTCATACAAAATTACTCTTTTAATTAAAATTAAATTAAATAAATTTAATTTTTTTAATTAAAAATATTACAAT‑‑TTTTTTTTTTTTTTTTGGAACTAACatat                                                                                                    <  2:3696639/128‑1 (MQ=255)
                                ataataCAAATTAAATAAAACTTTACAAACCAAATTACCCTTTAAATACAAATAAAATTTAATAAAGATAAATTTTTTAAATAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                                 <  1:2023600/128‑1 (MQ=255)
                                 taataaAAATTAATAATAACTGTACAAACCAAATTCCGCTTTAAATTCAAATAACATTATAAAAATATAAATTTTTTAAAGAAAAAAATTACAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                              <  2:188864/128‑1 (MQ=255)
                                 taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGTAACTAAAATATAAttt                                                                                               >  1:3862109/1‑128 (MQ=255)
                                  tataaataTTAAAAATAAATTTAAAACCAAAATTTCACTTTAAATTAAATTAAAATTATATAAATTTAATTTTTTTAAATAAAAATATTA‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                              <  2:537444/121‑1 (MQ=255)
                                    taCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTGTAACTAACATATAATTTTACCa                                                                                          >  1:2249584/1‑128 (MQ=255)
                                      cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTT‑‑GTACAAACATATAAtttttacaa                                                                                         >  1:2466724/1‑123 (MQ=255)
                                      cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGAAACTAAAATATAATTTTACCa                                                                                          >  1:2658396/1‑128 (MQ=255)
                                      aaaaTTAATAATAAATTTAAAAACCAAATTACCCTTTAAAATTAAATAAAATTATATTAATATAAATTTTTTAAATAAAAATTTTA‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCa                                                                                          <  2:1561962/127‑1 (MQ=255)
                                        aaatattaataaCTTTAAAAACAAAAATACCATTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAat                                                                                        <  1:2170685/122‑1 (MQ=255)
                                        aaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTTGAAAATAAAATATAATTTTAcaat                                                                                         >  2:1836862/1‑125 (MQ=255)
                                        aaTTAATAAAAAAATTATAAACAAAATTACACTTTAAATTAAAATAAAAATATATAAATAAAAATTTTTTTAATAAAAATATTAAAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                                         <  2:3528026/128‑1 (MQ=255)
                                         aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTT‑GAAAAAAAATATAATTTTACAAatt                                                                                       >  1:629230/1‑128 (MQ=255)
                                         aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGTAAATAACATATAATTTTACCAatt                                                                                       >  1:316365/1‑128 (MQ=255)
                                         aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGAAAAAAAAATATAATTTTAcaattt                                                                                       >  2:2007844/1‑123 (MQ=255)
                                             ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                   >  1:1078272/1‑128 (MQ=255)
                                              ttattaattttaaaCCAAAATTCACATTTAAATTTAAATAAAATTATATTAATATTAATTTTTTAAATAAAAATATTACAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                   <  1:2893528/116‑1 (MQ=255)
                                              aaataaATTTAAAAACCAAATTCCCCTTTAAATTCAAATAAAATTATATAAAGATAAATTTTTTAAATAAAAATATTACAAC‑‑‑‑ATTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                                 <  1:155972/127‑1 (MQ=255)
                                               taaaaCTTTAAAAACAAAAATTCCATTTAAATTAAAATAAAATTATAAAAATATAAATTTTTTAAATTAAAAAATTA‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                                 <  2:68263/125‑1 (MQ=255)
                                               aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGGAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGTAAATAAAATAAAATTTTACCAAtttttata                                                                                 >  2:2771926/1‑126 (MQ=255)
                                               aataaCTGTACAAACCAAATTCCCATTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                                 <  1:37758/128‑1 (MQ=255)
                                                  aaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTTGGAACTAAAAAAAAATTTTACCAATTAATAAaat                                                                               >  2:847998/1‑128 (MQ=255)
                                                  aaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTTGGAAATAAAATATAATTTAACCAATAATTAGaat                                                                               >  1:3489827/1‑128 (MQ=255)
                                                     tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACAAATTATTATaatttaa                                                                           >  2:3825732/1‑126 (MQ=255)
                                                     tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATATTTTTACCAATTTTTTGaattata                                                                           >  2:284671/1‑125 (MQ=255)
                                                      gTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACTAC‑‑TTTTTTTTTTTTTTTT‑GAACTAACATATAATTTTACCAATTATTATaatttaaa                                                                          >  2:2168694/1‑128 (MQ=255)
                                                       taaaaacaaaaTTACCCTTTAAATTTAAAAAACATTATTTAAATATAAATTTTTTAAAGAAAAATTTTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                                         <  2:2423905/120‑1 (MQ=255)
                                                       tACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTATTAAATAACATTTAATTTTACAAATAATTTTaatttaaa                                                                          >  1:1300025/1‑128 (MQ=255)
                                                          aaCCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTAACAAATATTTAaaattaaattta                                                                      >  2:234693/1‑127 (MQ=255)
                                                           aaccAAATTCCCATTTAAATTCAAAAAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttccc                                                                    <  1:3560985/126‑3 (MQ=255)
                                                              cAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTT‑GAAAAAACAAATAATTTAACAAATTATAAAAaattaaatttcaaca                                                                  >  2:3764543/1‑125 (MQ=255)
                                                                aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTT‑‑GAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCACAGATg                                                               >  2:2240186/1‑128 (MQ=255)
                                                                aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGTAAAAAAAAAAAAATTTTAAAAATAATTAAaatttcaatttaaaatat                                                                >  1:1766132/1‑121 (MQ=255)
                                                                aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGTAAATAAAATAAAATTTTACAAATTATTATaattaaaatttaaaaaatt                                                               >  1:1250117/1‑120 (MQ=255)
                                                                 aTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTT‑GAAATAAAATATAATTTTACCAATAATTAGAATTTCAAATTAACAAATg                                                               >  2:1713327/1‑128 (MQ=255)
                                                                  ttacccTTTAAATTAAAATAACATTTTATAAATATAAATTTTTTAAATAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                             <  2:1413049/125‑1 (MQ=255)
                                                                  ttaccatttAAATTAAAATAAAATTTTATAAATATAAATTTTTTAAATAAAAATATTA‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGa                                                              <  2:100079/122‑1 (MQ=255)
                                                                  ttaacttttAAATTAAAAAAAAATTATATAAATTTAAATTTTTTAAAGAAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                             <  2:3960710/122‑1 (MQ=255)
                                                                    acccTTTTAATTCAAATAAAATTTTATAAATATAAAATTTTTAAATAAAAATATT‑TAAT‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                            <  2:3611206/127‑1 (MQ=255)
                                                                    aaaaataaaaTTAAAATAAAATTATAATAATTAAAATTTTTTAAATATAAAAATTA‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                            <  1:2756358/121‑1 (MQ=255)
                                                                        tttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTTTAAAATAACAAAATATTTTACAAATTATTAAAATTAAAATTAAAAAAATGAAttta                                                         >  2:1478295/1‑126 (MQ=255)
                                                                        tttAAATTCAAATAAAAATATATAAATATAAATTTTTTAAAGAAAAATAATAAAAC‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                                      <  1:3364271/128‑1 (MQ=255)
                                                                         ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTT‑GAACTAAAATATAAATTAACAAATTATAACAATTACAATTTAACATAATAATAGAtt                                                       >  2:1650086/1‑128 (MQ=255)
                                                                         ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                                      >  1:452577/1‑128 (MQ=255)
                                                                         ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTATAATTTCAATTTCAAAGATGAATTAAttt                                                      >  2:2080715/1‑128 (MQ=255)
                                                                           aaaaTCAAATAACATTATATAAAGATAAATTTTTTAAATAAAAATATTACAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                     <  1:2817007/128‑1 (MQ=255)
                                                                           aaaTTTAAATTAAATTAAATAAATATAAATTTTTTAAATTAAAATATTATAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                    <  2:3331763/128‑1 (MQ=255)
                                                                           aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTTGTAAATAACATAATAATATAAAAATTATTAAAATTTAATTTTAAAATTTGAAttttttt                                                      >  1:1703202/1‑123 (MQ=255)
                                                                           aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTT‑‑‑GAACAAAAATTTTATTTTACCAAATTTTTAAATTTAAATTTAAAAAATTAATTGAttaatt                                                   >  2:3269148/1‑124 (MQ=255)
                                                                           aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAAAAAACATATAATTTTACCAATTATTATAATTTAAATTTAAAATATAAATTAAtttat                                                    >  2:3041796/1‑126 (MQ=255)
                                                                             aTTTAAATAAAATTATATAAATTTAAATTTTTTAAATAAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttcttc                                                  <  1:1467320/128‑1 (MQ=255)
                                                                             aTTCAAATAAAATTATTAAAATATAAATTTTTTAAATAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                                   <  1:239204/128‑1 (MQ=255)
                                                                              ttaaaaTAAAATTATATAAATTTAAATTTTTTAAATAAAAATATTAAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTtcttct                                                 <  2:2675791/125‑1 (MQ=255)
                                                                              ttCAAATAATATTATTTAAATTTAAAATTTTTTAAGAAAAATTTTATAAA‑‑TTTTTTTTTTTTTTTT‑GAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttcttc                                                  <  2:779745/128‑1 (MQ=255)
                                                                                      aCATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGTAAATAACATATAATTTTACAAATTATTAAAATTTCAATTTAAAATATAAATTTATTCATTATAATAAtt                                          >  1:3009562/1‑128 (MQ=255)
                                                                                        aTTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACAAATTATTATATTTTAAATTTAACAGATTATGTTATTTAATCTAAATATTTg                                        >  1:4033769/1‑128 (MQ=255)
                                                                                         ttATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACAAACATAAAATTTTAACAATTATTAGAATTAAAATTTCACAAATTAATTAATTTATTATAATAAtttta                                       >  2:2297280/1‑126 (MQ=255)
                                                                                          tatataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                       <  1:3405411/110‑1 (MQ=255)
                                                                                           atataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGTAAAAAACATATAATTTAACAAATTATTAAAATTTAAATTTCAAAAAATAATTTATTTATTAAaataatatttat                                     >  2:621904/1‑122 (MQ=255)
                                                                                            ttttaataTAAATTTTTTTAATAAAAATATT‑TAAT‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                    <  2:3392159/121‑1 (MQ=255)
                                                                                            tttaaatttAATTTTTTTTAATAAAAATAATTAAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                                     <  2:177986/120‑1 (MQ=255)
                                                                                            tataAATATTAATTTTTTAAATAAATA‑ATTTTAAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                    <  1:2942116/128‑1 (MQ=255)
                                                                                             attaataTAAAATTTTTTAATAAAAAAATTTAAAC‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                    <  2:3201119/122‑1 (MQ=255)
                                                                                             ataAATTTAAATTTTTTAAATAAAAATATTA‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                                   <  2:252117/128‑1 (MQ=255)
                                                                                                attattaaTTTTTTAAATAAAAA‑ATTTAAAT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                                <  1:927426/122‑1 (MQ=255)
                                                                                                aaGATAAATTTTTTAAAGAAAAATATTACAACTTTTTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTATAATTTAAATTTAAAAAATTAATTTATTTATTAAAATAAtttttataa                                   >  1:3729037/1‑122 (MQ=255)
                                                                                                 atttAAATTTTTTAAATAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGTATTGATTTCTTCTAATAATTTGTCTATATAg                               <  2:1233706/125‑1 (MQ=255)
                                                                                                  ttttaaTTTTTTAAATAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                              <  2:1949356/124‑1 (MQ=255)
                                                                                                  tttAAATTTTTTAAAGAAAAATATT‑TAAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                              <  1:2297280/126‑1 (MQ=255)
                                                                                                          ttttAAATAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                      <  1:1886518/128‑1 (MQ=255)
                                                                                                          ttttAAATAAAAATATTA‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCAAAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                      <  1:2562333/128‑1 (MQ=255)
                                                                                                            ttAAAGAAAAATATTACAAC‑‑‑‑‑‑TTTTTTTTTTTTGCAACTAACAAATAATTTAACAAATTATTAGAATTTCAATTTCCAAAATGAATTTATTAATTATAATAATTTGAATATAAAAATTTATTTTatata                 >  2:40207/1‑127 (MQ=255)
                                                                                                             tAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATAAATTGATTTATTCTAATAATTTTTGTATATATATTTTTTTtata                   >  2:3455825/1‑128 (MQ=255)
                                                                                                                ataaaaaTTTTACAA‑‑‑ATTTTTTTTTTTTTTTGGAAGTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCt                <  1:2106889/126‑1 (MQ=255)
                                                                                                                  aaaaaTAATACAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaa              <  1:365584/128‑1 (MQ=255)
                                                                                                                   aaaaTATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCAAAGATTAATTTATTTATTCTAATAATTTTTCTATATAGATTTTTTTTATATCTaaa             >  1:3949478/1‑128 (MQ=255)
                                                                                                                   aaaaTATTA‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaaa             <  2:1340465/128‑1 (MQ=255)
                                                                                                                    atatatTATAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAt            <  1:2320734/126‑1 (MQ=255)
                                                                                                                     aaTATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTAGAATTTAAATTTAAAATATTAATTTATTTATTATAATAATTTTTATATATATATTTTTTTTATATATAAAta           >  2:3886025/1‑127 (MQ=255)
                                                                                                                               |                                                                                                                                 
AAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTT  >  CP016816/76765‑77019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.