BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 202486	107 (0.060)	248 (0.130)	73/250	29.6	68.2%	intergenic (+264/‑411)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
*	?	CP016816	202490 =	124 (0.070)	248 (0.130)	73/250	29.6	68.2%	intergenic (+268/‑407)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 328 total aligned reads displayed.

AAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202368‑202617

   taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑Ataaa‑aattaaaaaa                                                                                                                      >  2:3451362/1‑128 (MQ=255)

    aataTATTTAATGTTAATTAAAATAAAATAAAATTAATAATTATTAAAATTTATATCCACGTTATCTATTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑Ttaaa‑aattaaaaaa                                                                                                                      <  1:2426007/128‑1 (MQ=255)

      taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaa                                                                                                                    >  2:3830344/1‑128 (MQ=255)

      taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTAATCTTCACAAAT‑AAAAAAAAAACATACCCC‑‑TTAAA‑AATTaaaaaaaa                                                                                                                    >  2:2108062/1‑128 (MQ=255)

      taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCAAATTTTTTATTTGTTTAACTTCAAAAAT‑AAAAAAAAAAAAATAAAC‑‑TAAAA‑AAATaaaaaaaa                                                                                                                    >  2:1961376/1‑128 (MQ=255)

       agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaa                                                                                                                   >  2:3382205/1‑128 (MQ=255)

          gtaaaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑‑TAAA‑AAATaaaaaaaaaaaaa                                                                                                               >  2:380703/4‑128 (MQ=255)

          gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCATATTTATATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATAAAATT‑‑‑AA‑AAATaaaaaaaaaaaaa                                                                                                               >  1:2900333/1‑128 (MQ=255)

           ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAATaaaaa‑aaaaaaaaaaaaaaa                                                                                                                 >  2:320945/1‑128 (MQ=255)

            tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                                              >  2:3253134/1‑128 (MQ=255)

            tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                                              >  1:3167772/1‑128 (MQ=255)

            tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAA‑‑AAAAAATAAA‑AAATaaaaaaaaaaaaaa                                                                                                              >  2:1396057/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATAATCGTGATCTATTTATATATTTATTTATATTAACAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                             >  2:5655/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                             >  2:1297731/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑AAATaaaaaaaaaaaaaaa                                                                                                             >  2:1242994/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                             >  2:3145997/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAATCACATTAAA‑AAATaaaaaaaaaaaaa                                                                                                               >  2:3994001/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAA‑AATAACC‑‑CTAAA‑AAATtaaaaaaaaaaaaaaa                                                                                                            >  2:3625316/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAAT‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaa                                                                                                            >  2:857957/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTATTTTATCTAAAAAAAT‑AAAAAAAAAACAA‑‑‑AAAAATAAA‑AAATaaaaaaaaaaaaaaaa                                                                                                            >  2:2468819/1‑128 (MQ=255)

              aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                                           >  1:3041044/1‑128 (MQ=255)

              aGGTTAATTAAAATACCATAAACTTAATAATACTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACATaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                              >  2:396462/1‑128 (MQ=255)

              aGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATACTCTTAATCTATTTTTTTAATTATTTATCTTCACAAAT‑AAAAAAAAAACAAACAACAaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                              >  2:2776146/1‑128 (MQ=255)

               ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAACAATACCATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaa                                                                                                          >  1:2551337/1‑128 (MQ=255)

               ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                                           >  2:3707136/1‑128 (MQ=255)

               ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAATCCC‑ATTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                            >  2:3063605/1‑128 (MQ=255)

               ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCATCACAAAT‑AAAAAAAAAAAAAACACCTAaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                             >  2:2041705/1‑128 (MQ=255)

                gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑‑ATAAA‑AAATtaaaaaaaaaaaaaaaaaa                                                                                                         >  1:2266349/1‑128 (MQ=255)

                  taattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTATATCTATTAATATATATAAATATATAAACAAAA‑AAAAAAAAAACAA‑‑‑ACAAATAAA‑AAATtaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:2716691/1‑128 (MQ=255)

                  taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:799074/1‑128 (MQ=255)

                   aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAACAAACCC‑ATTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:3288389/1‑128 (MQ=255)

                    attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCACTTAaaaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:3868914/1‑128 (MQ=255)

                    attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑CAAATTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:3074780/1‑127 (MQ=255)

                    attaaAATAAAATAAAATTTATAATTTATATAATTTTAATACACCTTTTTAATTTTTTTTTTTTTTTAAATTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑AATTaaaaaaaaaaaaaaaaaactaa                                                                                                      <  1:4002832/128‑5 (MQ=255)

                     ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑ATAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:3973733/1‑126 (MQ=255)

                     ttaaAATAACATAAAATTAATAATTCTAAATATGTATAAACTCTTGATATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTa                                                                                                    <  1:2316245/128‑1 (MQ=255)

                      taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATACCC‑‑TAAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:3241315/1‑125 (MQ=255)

                       aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAACAAACCCC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2643029/1‑123 (MQ=255)

                        aaaTACCATAAACTTAATAATTCTTATAATGTCGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCTTAAAAA‑Taaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:3747175/1‑125 (MQ=255)

                        aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:3464418/1‑123 (MQ=255)

                         aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACAC‑‑TAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaac                                                                                                 >  2:3541626/1‑122 (MQ=255)

                           taacATAAACTTAATAATTATTATAATTTATATCCTCTTTATATATTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                             <  1:236119/125‑1 (MQ=255)

                              cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaacaaaaaacaaaacat                                                                                            >  2:412016/1‑117 (MQ=255)

                                 taatatataaatTATTATAATTTATATTCTGTTTATATTTATTTTTTTTTTTTTATAATCACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:952887/119‑1 (MQ=255)

                                 aaaattaaaaattaTAATAATGTATATCCACTTTAACTATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  1:184692/128‑1 (MQ=255)

                                 aaaaataataaTTCTTATAATGTATATACTCGTTATATATTTTTTTATTTTTTTATCTTCACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                        <  1:3596006/123‑1 (MQ=255)

                                 aaaaTTAATAATTATAATAATTTTTATACTCTTGTTTTATTTTTTTATTTTTTTAATATAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                         <  1:3379997/128‑1 (MQ=255)

                                       aataatTTTTATAATTTATATATTTTTTTTTTATTTTTTTATTTTTTTATATTTAAAAAA‑AAAAAAAAAAAAAATCCCTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                   <  2:488783/128‑1 (MQ=255)

                                        taaaaatttATAATTTTAATACTCTTCATATATTTTTTTTATTTTTAATATTCACAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                   <  1:218034/121‑1 (MQ=255)

                                            ttaatataATTTATATACAAGTTATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                              <  1:3634091/124‑1 (MQ=255)

                                            ttCTTATAATTTATATCCTCGTGTTCTATTTTTTTTTTTGTTTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                              <  1:2643029/128‑1 (MQ=255)

                                                   aaTTTATATCCTCGTGATATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                       <  1:548923/128‑1 (MQ=255)

                                                       taaatacttttGATATATTTTTTTAATTTTTTATATTTAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                   <  1:1436793/118‑1 (MQ=255)

                                                        aaataactatGATATATTTTTTTATTTTTTTTAAATTAAAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                   <  1:2066736/119‑1 (MQ=255)

                                                            gactttgttatttttttttatttttttaAATTTAAAAAT‑AAAAAAAAAAAAATACCC‑‑TAAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  2:2310632/116‑1 (MQ=255)

                                                            actatttttttatttttttattttttTAAATTAAAAAAA‑AAAAAAAAAAAAAAAACC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                             <  2:1609997/118‑1 (MQ=255)

                                                             atagttattatttttttttttttttTAAATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  1:3776981/117‑1 (MQ=255)

                                                              tatttttatatttttttattttttTAATATAAAAAAA‑AAAAAAAAAAAAATCCCCATAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  1:3868555/120‑1 (MQ=255)

                                                               cgttttttATTTTTTTATTTTATTATAATAACAAAA‑AAAAAAAAAACAAAACCC‑‑ATAAA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  1:773740/121‑1 (MQ=255)

                                                                 ttttataattttttatttttttatATTAAAAAAT‑AAAAAAAAAACAATACAC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  1:1135331/120‑1 (MQ=255)

                                                                 ttatatatttttttattttttTATATTAAAAAAT‑AAAAAAAAAAAAATCCACTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  1:173593/123‑1 (MQ=255)

                                                                 ttataaaattttttttttttttATTTTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  1:850859/120‑1 (MQ=255)

                                                                 gttttaaTTTTTTAATTTTTTTATTTTCAAAAAT‑AAAAAAAAAAAAAACCCC‑TAAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                          <  1:1265363/122‑1 (MQ=255)

                                                                  tattattttttttATTTTTTAATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  1:2816169/122‑1 (MQ=255)

                                                                  tataaatttttttatttttttATAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  1:3926411/123‑1 (MQ=255)

                                                                   taatatttttttattttttAATATAAAAAAAA‑AAAAAAAAAAAAATCACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                          <  1:1044233/125‑1 (MQ=255)

                                                                   atatatttttttattttttTTAATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                       <  1:3528406/125‑1 (MQ=255)

                                                                    ttataattttttttttttttttttTACAAAA‑AAAAAAAAAAAAAATACCCATAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  2:3117004/122‑1 (MQ=255)

                                                                       ttttttttattttttttatATAAAAAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  1:1586167/127‑1 (MQ=255)

                                                                        tatttttAATATTTTATATTAAAAAAT‑AAAAAAAAAAAAAAACCCCTT‑‑AA‑ATATTTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                  <  1:459613/126‑1 (MQ=255)

                                                                           tttatttttttTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                               <  1:3253134/123‑1 (MQ=255)

                                                                            tttATTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAATACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                               <  2:3464418/128‑1 (MQ=255)

                                                                             tttttttttTATATTTACAAAA‑AAAAAAAAAAAAATCTCATT‑‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                           <  2:2226341/125‑1 (MQ=255)

                                                                              tATTTTTTTATAATAAAAAAA‑AAAAAAAAAACAAAACCC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                            <  1:3351037/128‑1 (MQ=255)

                                                                              tATTTTTTAAACTTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                            <  1:3415340/128‑1 (MQ=255)

                                                                               aTTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                          <  1:2033044/128‑1 (MQ=255)

                                                                                ttttttTATATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                         <  1:1396057/128‑1 (MQ=255)

                                                                                 ttGTTTATTTTCAAAAAT‑AAAAAAAAAAAAATCCCATAAAAAA‑TAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                           <  2:335236/128‑1 (MQ=255)

                                                                                   ttttATTTTAAAAATT‑TAAAAAAAAAAAATATCCTTAAATA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                         <  1:6056/127‑1 (MQ=255)

                                                                                     ttttaataaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  2:3074780/118‑1 (MQ=255)

                                                                                     ttATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATGAATTTATTAAAATACCATATTATACCAAATTTTTTTTTTAAAATAATATAtt                                     >  1:3121967/1‑128 (MQ=255)

                                                                                     ttATATTAAAAAAT‑AAAAAAAAAAAAATCCACTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                       <  1:3145997/128‑1 (MQ=255)

                                                                                      ttaattaaaaaaT‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                    <  2:3904721/119‑1 (MQ=255)

                                                                                        aattaacaAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                 <  1:261589/123‑1 (MQ=255)

                                                                                         ttttaaaaaT‑AAAAAAAAAAAAAATACCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                                <  2:1033496/122‑1 (MQ=255)

                                                                                           taaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                            <  1:3578690/124‑1 (MQ=255)

                                                                                           taaaaaaa‑aaaaaaaaaaCAAAACAC‑‑TTAAA‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                               <  1:1368179/124‑1 (MQ=255)

                                                                                                  t‑AAAAAAAAAAAAATCACAA‑‑TAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                        <  1:1811652/128‑1 (MQ=255)

                                                                                                  t‑AAAAAAAAAAAAATACAAATTAAAA‑ATAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                         <  1:1597874/128‑1 (MQ=255)

                                                                                                   aaaaaaaaaaaaaATCAACTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                        <  1:946272/127‑1 (MQ=255)

                                                                                                    aaaaaaaaaaaaATCAAC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                      <  1:1509771/128‑1 (MQ=255)

                                                                                                    aaaaaaaaaaaaAT‑ACCTTTT‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                      <  1:1026002/128‑1 (MQ=255)

                                                                                                         aaaaaCAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACAAAAAAAAAACTCAATTAATTAAAATTACCTATAATACAAAATATTATTTTTAAAATAAAATATTTAAATAatataataaataaat                >  1:19922/1‑118 (MQ=255)

                                                                                                               aaaaaaccacaaaa‑aattaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat              <  2:2596316/117‑1 (MQ=255)

                                                                                                                 aatacacttAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  1:3702924/121‑1 (MQ=255)

                                                                                                                 aaatacaaataa‑aaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  1:3525027/118‑1 (MQ=255)

                                                                                                                     cacttAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataata        <  1:2042411/125‑1 (MQ=255)

                                                                                                                      cccttaa‑aaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  2:437078/123‑1 (MQ=255)

                                                                                                                       ccttaa‑aaattaaaaaAAAAAAAAAAAAAAAAAAAAAACAACCACCATTTATTTAAATTCCCATTTATACCCCATTTTTTTTTTAAAAAAAGAATTTTACAAaatatatataaaatatatataaaaat      >  1:3826223/5‑124 (MQ=255)

                                                                                                                           aa‑aattaaaaaaAAAAAAAAAAAAAAAATAAAAACAAAATATATTTATTAAAATTCCATATTTAACAAAATTTTTTTTTTAAAATAATATATTAAAAAAATTTATATAAAAAATATataatagaaatt  >  2:3668135/1‑122 (MQ=255)

AAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202368‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.