| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | = 1724963 | 334 (1.490) | 6 (0.030) | 5/440 | 14.8 | 2.1% | coding (45/870 nt) | TMARI_RS08945 | ABC transporter permease |
| ? | NC_021214 | = 1725091 | 248 (1.140) | coding (173/870 nt) | TMARI_RS08945 | ABC transporter permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTGGGTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_021214/1724720‑1724963‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagccCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTTAACCAGAAGGCTTTCCAGTAACCAATGGATTCCGTTTTATTTTTTCTTAACATGCCGATTTATTACCTCCTTAATCCAGTTTTATTCTGGGATCGAGAATTGCATAAAGAACATCA < NC_021214/1725091‑1724856 TTTGGGTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGA > 2:790363/1‑239TTTGGGTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGA < 1:541555/239‑1TTTGGGTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGA > 2:693727/1‑239TTTGGGTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGA > 1:947802/1‑239TTTGGGTCGAGAACATCTTCAGAATACCAGGATTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGA > 2:596613/1‑239 TTGGGTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGA < 1:78871/238‑1 GTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGAAAG > 1:584358/1‑237 GTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTACCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTTAGAAAAAATAAAACGGAATCCATTGGTTACTGGAAAG > 1:493252/1‑237 ATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGAAAGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGA > 2:461165/1‑238 ATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGCTACTGGAAAGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGA > 1:105761/1‑238 GAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAAGCCATTGGTTACTGGAAAGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCT < 1:461165/239‑1 ACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGCTACTGGAAAGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTT < 2:105761/238‑1 TATAGTTGATGTTCCTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGAAAGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGA > 1:320835/1‑229 TATAGTTGATGTTCCTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGAAAGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGA < 2:320835/229‑1 AAGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTTAACCAGAAGGCTTTCCAGTAACCAATGGATTCCGTTTTATTTTTTCTTAACATGCCGATTTATTACCTCCTTAATCCAGTTTTATTCTGGGATCGAGAATTGCATAAAGAACAT < 1:261646/239‑1 AGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGTGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTTAACCAGAAGGCTTTCCAGTAACCAATGGATTCCGTTTTATTTTTTCTTAACATGCCGATTTATTACCTCCTTAATCCAGTTTTATTCTGGGATCGAGAATTGCATAAAGAACATC < 1:484441/239‑1 AGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTTAACCAGAAGGCTTTCCAGTAACCAATGGATTCCGTTTTATTTTTTCTTAACATGCCGATTTATTACCTCCTTAATCCAGTTTTATTCTGGGATCGAGAATTGCATAAAGAACATC < 2:174635/239‑1 AGCCCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTTAACCAGAAGGCTTTCCAGTAACCAATGGATTCCGTTTTATTTTTTCTTAACATGCCGATTTATTACCTCCTTAATCCAGTTTTATTCTGGGATCGAGAATTGCATAAAGAACATC < 1:772553/239‑1 AGCCCTGATATAGTGAGGCTCGTCGTAAGAATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTTAACCAGAAGGCTTTCCAGTAACCAATGGATTCCGTTTTATTTTTTCTTAACATGCCGATTTATTACCTCCTTAATCCAGTTTTATTCTGGGATCGAGAATTGCATAAAGAACATC < 1:551553/239‑1 CCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTTAACCAGAAGGCTTTCCAGTAACCAATGGATTCCGTTTTATTTTTTCTTAACATGCCGATTTATTACCTCCTTAATCCAGTTTTATTCTGGGATCGAGAATTGCATAAAGAACATCA > 1:646684/1‑237 TTTGGGTCGAGAACATCTTCAGAATACCAGGTTTGGGACAACTCTTTGCTAATGCAGCAGTCACTAGAGACTATCCACTTTTAGTAACTTCCACATTTATACTTGCCCTTACCGTTATGATCATGAACCTTATAGTTGATGTTCTTTATGCAATTCTCGATCCCAGAATAAAACTGGATTAAGGAGGTAATAAATCGGCATGTTAAGAAAAAATAAAACGGAATCCATTGGTTACTGGAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_021214/1724720‑1724963‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagccCTGATATAGTGAGGCTCGTCGTAAGGATATGGAGCAATATAGGGAGCCAGTATTGCAAGTGCTATAAGGATTAAAACAAAAACTCCCCCTATTACTGCCATTTTGTTTTTTTTGAATCTTAACCAGAAGGCTTTCCAGTAACCAATGGATTCCGTTTTATTTTTTCTTAACATGCCGATTTATTACCTCCTTAATCCAGTTTTATTCTGGGATCGAGAATTGCATAAAGAACATCA < NC_021214/1725091‑1724856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |